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1AP8
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BU of 1ap8 by Molmil
TRANSLATION INITIATION FACTOR EIF4E IN COMPLEX WITH M7GDP, NMR, 20 STRUCTURES
Descriptor: 7N-METHYL-8-HYDROGUANOSINE-5'-DIPHOSPHATE, TRANSLATION INITIATION FACTOR EIF4E
Authors:Matsuo, H, Li, H, Mcguire, A.M, Fletcher, M, Gingras, A.C, Sonenberg, N, Wagner, G.
Deposit date:1997-07-25
Release date:1998-01-28
Last modified:2024-03-06
Method:SOLUTION NMR
Cite:Structure of translation factor eIF4E bound to m7GDP and interaction with 4E-binding protein.
Nat.Struct.Biol., 4, 1997
1COP
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BU of 1cop by Molmil
THREE-DIMENSIONAL DIMER STRUCTURE OF THE LAMBDA-CRO REPRESSOR IN SOLUTION AS DETERMINED BY HETERONUCLEAR MULTIDIMENSIONAL NMR
Descriptor: CRO REPRESSOR
Authors:Matsuo, H, Shirakawa, M, Kyogoku, Y.
Deposit date:1995-06-23
Release date:1995-10-15
Last modified:2022-02-16
Method:SOLUTION NMR
Cite:Three-dimensional dimer structure of the lambda-Cro repressor in solution as determined by heteronuclear multidimensional NMR.
J.Mol.Biol., 254, 1995
2JX3
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BU of 2jx3 by Molmil
NMR solution structure of the N-terminal domain of DEK
Descriptor: Protein DEK
Authors:Matsuo, H, Devany, M.
Deposit date:2007-11-02
Release date:2008-02-12
Last modified:2022-03-16
Method:SOLUTION NMR
Cite:Solution NMR structure of the N-terminal domain of the human DEK protein
Protein Sci., 17, 2008
2MZZ
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BU of 2mzz by Molmil
NMR structure of APOBEC3G NTD variant, sNTD
Descriptor: Apolipoprotein B mRNA-editing enzyme, catalytic polypeptide-like 3G variant, ZINC ION
Authors:Kouno, T, Luengas, E.M, Shigematu, M, Shandilya, S.M.D, Zhang, J, Chen, L, Hara, M, Schiffer, C.A, Harris, R.S, Matsuo, H.
Deposit date:2015-02-28
Release date:2015-05-13
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Structure of the Vif-binding domain of the antiviral enzyme APOBEC3G.
Nat.Struct.Mol.Biol., 22, 2015
6WMB
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BU of 6wmb by Molmil
Crystal structure of a soluble variant of full-length human APOBEC3G (pH 8.0)
Descriptor: APOLIPOPROTEIN B MRNA EDITING ENZYME, CATALYTIC PEPTIDE- LIKE 3G, DNA (5'-D(P*CP*C)-3'), ...
Authors:Maiti, A, Matsuo, H.
Deposit date:2020-04-21
Release date:2020-12-23
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (3.02 Å)
Cite:Crystal Structure of a Soluble APOBEC3G Variant Suggests ssDNA to Bind in a Channel that Extends between the Two Domains.
J.Mol.Biol., 432, 2020
6WMA
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BU of 6wma by Molmil
Crystal structure of a soluble variant of full-length human APOBEC3G (pH 7.6)
Descriptor: APOLIPOPROTEIN B MRNA EDITING ENZYME, CATALYTIC PEPTIDE- LIKE 3G, CHLORIDE ION, ...
Authors:Maiti, A, Matsuo, H.
Deposit date:2020-04-21
Release date:2020-12-23
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal Structure of a Soluble APOBEC3G Variant Suggests ssDNA to Bind in a Channel that Extends between the Two Domains.
J.Mol.Biol., 432, 2020
6WMC
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BU of 6wmc by Molmil
Crystal structure of a soluble variant of full-length human APOBEC3G (pH 9.0)
Descriptor: APOLIPOPROTEIN B MRNA EDITING ENZYME, CATALYTIC PEPTIDE-3 LIKE 3G, DNA (5'-D(P*CP*C)-3'), ...
Authors:Maiti, A, Matsuo, H.
Deposit date:2020-04-21
Release date:2020-12-23
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (3.49 Å)
Cite:Crystal Structure of a Soluble APOBEC3G Variant Suggests ssDNA to Bind in a Channel that Extends between the Two Domains.
J.Mol.Biol., 432, 2020
5KEG
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BU of 5keg by Molmil
Crystal structure of APOBEC3A in complex with a single-stranded DNA
Descriptor: CALCIUM ION, CHLORIDE ION, DNA (5'-D(*TP*TP*CP*TP*T)-3'), ...
Authors:Kouno, T, Hilbert, B.J, Silvas, T, Royer, W.E, Matsuo, H, Schiffer, C.A.
Deposit date:2016-06-09
Release date:2017-05-10
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal structure of APOBEC3A bound to single-stranded DNA reveals structural basis for cytidine deamination and specificity.
Nat Commun, 8, 2017
7UXD
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BU of 7uxd by Molmil
Crystal structure of APOBEC3G Catalytic domain complex with ssDNA containing 2'-deoxy Zebularine.
Descriptor: DNA (5'-D(*AP*AP*TP*CP*CP*(DDN)P*AP*AP*A)-3'), DNA dC->dU-editing enzyme APOBEC-3G, ZINC ION
Authors:Maiti, A, Matsuo, H.
Deposit date:2022-05-05
Release date:2022-12-14
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Structure of the catalytically active APOBEC3G bound to a DNA oligonucleotide inhibitor reveals tetrahedral geometry of the transition state.
Nat Commun, 13, 2022
1Q1V
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BU of 1q1v by Molmil
Structure of the Oncoprotein DEK: a putative DNA-binding Domain Related to the Winged Helix Motif
Descriptor: DEK protein
Authors:Devany, M, Kotharu, N.P, Matsuo, H.
Deposit date:2003-07-22
Release date:2004-08-10
Last modified:2022-03-02
Method:SOLUTION NMR
Cite:Solution NMR structure of the C-terminal domain of the human protein DEK
PROTEIN SCI., 13, 2004
2ZGY
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BU of 2zgy by Molmil
PARM with GDP
Descriptor: GUANOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, Plasmid segregation protein parM
Authors:Popp, D, Narita, A, Oda, T, Fujisawa, T, Matsuo, H, Nitanai, Y, Iwasa, M, Maeda, K, Onishi, H, Maeda, Y.
Deposit date:2008-01-30
Release date:2008-02-12
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Molecular structure of the ParM polymer and the mechanism leading to its nucleotide-driven dynamic instability
Embo J., 27, 2008
2ZHC
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BU of 2zhc by Molmil
ParM filament
Descriptor: ADENOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, Plasmid segregation protein parM
Authors:Popp, D, Narita, A, Oda, T, Fujisawa, T, Matsuo, H, Nitanai, Y, Iwasa, M, Maeda, K, Onishi, H, Maeda, Y.
Deposit date:2008-02-04
Release date:2008-02-26
Last modified:2024-03-13
Method:ELECTRON MICROSCOPY (23 Å)
Cite:Molecular structure of the ParM polymer and the mechanism leading to its nucleotide-driven dynamic instability
Embo J., 27, 2008
2ZGZ
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BU of 2zgz by Molmil
PARM with GMPPNP
Descriptor: MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER, Plasmid segregation protein parM
Authors:Popp, D, Narita, A, Oda, T, Fujisawa, T, Matsuo, H, Nitanai, Y, Iwasa, M, Maeda, K, Onishi, H, Maeda, Y.
Deposit date:2008-01-30
Release date:2008-02-12
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Molecular structure of the ParM polymer and the mechanism leading to its nucleotide-driven dynamic instability
Embo J., 27, 2008
3CRD
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BU of 3crd by Molmil
NMR STRUCTURE OF THE RAIDD CARD DOMAIN, 15 STRUCTURES
Descriptor: RAIDD
Authors:Chou, J.J, Matsuo, H, Duan, H, Wagner, G.
Deposit date:1998-07-24
Release date:1999-02-02
Last modified:2022-03-16
Method:SOLUTION NMR
Cite:Solution structure of the RAIDD CARD and model for CARD/CARD interaction in caspase-2 and caspase-9 recruitment.
Cell(Cambridge,Mass.), 94, 1998
2JYW
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BU of 2jyw by Molmil
Solution structure of C-terminal domain of APOBEC3G
Descriptor: DNA dC->dU-editing enzyme APOBEC-3G, ZINC ION
Authors:Chen, K, Harjes, E, Gross, P.J, Fahmy, A, Lu, Y, Shindo, K, Harris, R.S, Matsuo, H.
Deposit date:2007-12-20
Release date:2008-02-26
Last modified:2021-10-20
Method:SOLUTION NMR
Cite:Structure of the DNA deaminase domain of the HIV-1 restriction factor APOBEC3G.
Nature, 452, 2008
2KEM
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BU of 2kem by Molmil
Extended structure of citidine deaminase domain of APOBEC3G
Descriptor: DNA dC->dU-editing enzyme APOBEC-3G, ZINC ION
Authors:Harjes, E, Gross, P.J, Chen, K, Lu, Y, Shindo, K, Nowarski, R, Gross, J.D, Kotler, M, Harris, R.S, Matsuo, H.
Deposit date:2009-01-30
Release date:2009-06-02
Last modified:2021-11-10
Method:SOLUTION NMR
Cite:An extended structure of the APOBEC3G catalytic domain suggests a unique holoenzyme model
J.Mol.Biol., 389, 2009
7UQA
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BU of 7uqa by Molmil
Crystal structure of the small Ultra-Red Fluorescent Protein (smURFP)
Descriptor: CHLORIDE ION, SODIUM ION, small Ultra-Red Fluorescent Protein (smURFP)
Authors:Maiti, A, Buffalo, C.Z, Saurabh, S, Montecinos-Franjola, F, Hachey, J.S, Conlon, W.J, Tran, G.N, Drobizhev, M, Moerner, W.E, Ghosh, P, Matsuo, H, Tsien, R.Y, Lin, J.Y, Rodriguez, E.A.
Deposit date:2022-04-19
Release date:2023-07-19
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.802 Å)
Cite:Structural and photophysical characterization of the small ultra-red fluorescent protein.
Nat Commun, 14, 2023
6BUX
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BU of 6bux by Molmil
CRYSTAL STRUCTURE OF APOBEC3G CATALYTIC DOMAIN COMPLEX WITH SUBSTRATE SSDNA
Descriptor: Apolipoprotein B mRNA editing enzyme catalytic subunit 3G catalytic domain, DNA (5'-D(*AP*AP*TP*CP*CP*CP*AP*AP*A)-3'), GLYCEROL, ...
Authors:Maiti, A, Matsuo, H.
Deposit date:2017-12-11
Release date:2018-07-18
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.856 Å)
Cite:Crystal structure of the catalytic domain of HIV-1 restriction factor APOBEC3G in complex with ssDNA.
Nat Commun, 9, 2018
8FTQ
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BU of 8ftq by Molmil
Crystal structure of hRpn13 Pru domain in complex with Ubiquitin and XL44
Descriptor: N-(3-{[(3R)-5-fluoro-2-oxo-2,3-dihydro-1H-indol-3-yl]methyl}phenyl)-4-methoxybenzamide, Proteasomal ubiquitin receptor ADRM1, Ubiquitin
Authors:Walters, K.J, Lu, X, Chandravanshi, M.
Deposit date:2023-01-13
Release date:2024-03-27
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:A structure-based designed small molecule depletes hRpn13 Pru and a select group of KEN box proteins.
Nat Commun, 15, 2024
7KXI
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BU of 7kxi by Molmil
Structure of XL5-ligated hRpn13 Pru domain
Descriptor: 2-{[(2S)-2-cyano-3-{3-[(4-methylbenzene-1-carbonyl)amino]phenyl}propanoyl]amino}benzoic acid, Proteasomal ubiquitin receptor ADRM1
Authors:Lu, X, Walters, K.J.
Deposit date:2020-12-03
Release date:2021-12-15
Last modified:2021-12-29
Method:SOLUTION NMR
Cite:Structure-guided bifunctional molecules hit a DEUBAD-lacking hRpn13 species upregulated in multiple myeloma.
Nat Commun, 12, 2021
3IR2
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BU of 3ir2 by Molmil
Crystal structure of the APOBEC3G catalytic domain
Descriptor: CHLORIDE ION, DNA dC->dU-editing enzyme APOBEC-3G, MAGNESIUM ION, ...
Authors:Shandilya, S.M.D, Schiffer, C.A.
Deposit date:2009-08-21
Release date:2010-01-12
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Crystal Structure of the APOBEC3G Catalytic Domain Reveals Potential Oligomerization Interfaces.
Structure, 18, 2010
2LQZ
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BU of 2lqz by Molmil
Structure of the RNA claw of the DNA packaging motor of bacteriophage 29
Descriptor: RNA (27-MER)
Authors:Harjes, E.J, Matsuo, H.J, Kitamura, A.J.
Deposit date:2012-03-19
Release date:2012-08-01
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Structure of the RNA claw of the DNA packaging motor of bacteriophage 29.
Nucleic Acids Res., 40, 2012
1IS1
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BU of 1is1 by Molmil
Crystal structure of ribosome recycling factor from Vibrio parahaemolyticus
Descriptor: RIBOSOME RECYCLING FACTOR
Authors:Nakano, H, Yamaichi, Y, Uchiyama, S, Yoshida, T, Nishina, K, Kato, H, Ohkubo, T, Honda, T, Yamagata, Y, Kobayashi, Y.
Deposit date:2001-11-05
Release date:2003-06-17
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structure and binding mode of a ribosome recycling factor (RRF) from mesophilic bacterium
J.BIOL.CHEM., 278, 2003
4IOU
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BU of 4iou by Molmil
Crystal structure of the HIV-1 Vif binding, catalytically active domain of APOBEC3F
Descriptor: DNA dC->dU-editing enzyme APOBEC-3F, ZINC ION
Authors:Bohn, M, Shandilya, S.M.D, Schiffer, C.A.
Deposit date:2013-01-08
Release date:2013-05-29
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.751 Å)
Cite:Crystal Structure of the DNA Cytosine Deaminase APOBEC3F: The Catalytically Active and HIV-1 Vif-Binding Domain.
Structure, 21, 2013
8H0I
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BU of 8h0i by Molmil
Cryo-EM structure of APOBEC3G-Vif complex
Descriptor: APOBEC3G, CHLORIDE ION, Core binding factor beta, ...
Authors:Kouno, T, Shibata, S, Hyun, J, Kim, T.G, Wolf, M.
Deposit date:2022-09-29
Release date:2023-07-19
Method:ELECTRON MICROSCOPY (2.8 Å)
Cite:Structural insights into RNA bridging between HIV-1 Vif and antiviral factor APOBEC3G.
Nat Commun, 14, 2023

 

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