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1JQN
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CRYSTAL STRUCTURE OF E.COLI PHOSPHOENOLPYRUVATE CARBOXYLASE IN COMPLEX WITH MN2+ AND DCDP
Descriptor:phosphoenolpyruvate carboxylase, MANGANESE (II) ION, ASPARTIC ACID, ...
Authors:Matsumura, H., Kai, Y.
Deposit date:2001-08-07
Release date:2003-01-14
Last modified:2018-05-30
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:Crystal structures of C4 form maize and quaternary complex of E. coli phosphoenolpyruvate carboxylases.
Structure, 10, 2002
1JQO
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CRYSTAL STRUCTURE OF C4-FORM PHOSPHOENOLPYRUVATE CARBOXYLASE FROM MAIZE
Descriptor:phosphoenolpyruvate carboxylase, SULFATE ION
Authors:Matsumura, H., Kai, Y.
Deposit date:2001-08-07
Release date:2003-01-14
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (3 Å)
Cite:Crystal structures of C4 form maize and quaternary complex of E. coli phosphoenolpyruvate carboxylases.
Structure, 10, 2002
1QB4
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CRYSTAL STRUCTURE OF MN(2+)-BOUND PHOSPHOENOLPYRUVATE CARBOXYLASE
Descriptor:PHOSPHOENOLPYRUVATE CARBOXYLASE, MANGANESE (II) ION, ASPARTIC ACID
Authors:Matsumura, H., Terada, M., Shirakata, S., Inoue, T., Yoshinaga, T., Izui, K., Kai, Y.
Deposit date:1999-04-30
Release date:2002-05-01
Last modified:2018-05-23
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Plausible phosphoenolpyruvate binding site revealed by 2.6 A structure of Mn2+-bound phosphoenolpyruvate carboxylase from Escherichia coli
FEBS Lett., 458, 1999
2CW7
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CRYSTAL STRUCTURE OF INTEIN HOMING ENDONUCLEASE II
Descriptor:Endonuclease PI-PkoII, SULFATE ION
Authors:Matsumura, H., Takahashi, H., Inoue, T., Hashimoto, H., Nishioka, M., Fujiwara, S., Takagi, M., Imanaka, T., Kai, Y.
Deposit date:2005-06-17
Release date:2006-04-18
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Crystal structure of intein homing endonuclease II encoded in DNA polymerase gene from hyperthermophilic archaeon Thermococcus kodakaraensis strain KOD1
Proteins, 63, 2006
2CW8
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CRYSTAL STRUCTURE OF INTEIN HOMING ENDONUCLEASE II
Descriptor:Endonuclease PI-PkoII, SULFATE ION, GLYCEROL
Authors:Matsumura, H., Takahashi, H., Inoue, T., Hashimoto, H., Nishioka, M., Fujiwara, S., Takagi, M., Imanaka, T., Kai, Y.
Deposit date:2005-06-17
Release date:2006-04-18
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal structure of intein homing endonuclease II encoded in DNA polymerase gene from hyperthermophilic archaeon Thermococcus kodakaraensis strain KOD1
Proteins, 63, 2006
3AXK
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STRUCTURE OF RICE RUBISCO IN COMPLEX WITH NADP(H)
Descriptor:Ribulose bisphosphate carboxylase large chain, Ribulose bisphosphate carboxylase small chain, chloroplastic, ...
Authors:Matsumura, H., Mizohata, E., Ishida, H., Kogami, A., Ueno, T., Makino, A., Inoue, T., Yokota, A., Mae, T., Kai, Y.
Deposit date:2011-04-11
Release date:2012-04-11
Last modified:2013-06-05
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal structure of rice Rubisco and implications for activation induced by positive effectors NADPH and 6-phosphogluconate
J.Mol.Biol., 422, 2012
3AXM
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STRUCTURE OF RICE RUBISCO IN COMPLEX WITH 6PG
Descriptor:Ribulose bisphosphate carboxylase large chain, Ribulose bisphosphate carboxylase small chain, chloroplastic, ...
Authors:Matsumura, H., Mizohata, E., Ishida, H., Kogami, A., Ueno, T., Makino, A., Inoue, T., Yokota, A., Mae, T., Kai, Y.
Deposit date:2011-04-11
Release date:2012-04-11
Last modified:2013-06-05
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Crystal structure of rice Rubisco and implications for activation induced by positive effectors NADPH and 6-phosphogluconate
J.Mol.Biol., 422, 2012
3B1J
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CRYSTAL STRUCTURE OF GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE COMPLEXED WITH CP12 IN THE PRESENCE OF COPPER FROM SYNECHOCOCCUS ELONGATUS
Descriptor:Glyceraldehyde 3-phosphate dehydrogenase (NADP+), CP12, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, ...
Authors:Matsumura, H., Kai, A., Inoue, T.
Deposit date:2011-07-04
Release date:2012-01-11
Last modified:2013-06-12
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structure Basis for the Regulation of Glyceraldehyde-3-Phosphate Dehydrogenase Activity via the Intrinsically Disordered Protein CP12.
Structure, 19, 2011
3B1K
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CRYSTAL STRUCTURE OF GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE COMPLEXED WITH CP12 IN THE ABSENCE OF COPPER FROM SYNECHOCOCCUS ELONGATUS
Descriptor:Glyceraldehyde 3-phosphate dehydrogenase (NADP+), CP12, NICOTINAMIDE-ADENINE-DINUCLEOTIDE
Authors:Matsumura, H., Kai, A., Inoue, T.
Deposit date:2011-07-04
Release date:2012-01-11
Last modified:2013-06-12
Method:X-RAY DIFFRACTION (3.302 Å)
Cite:Structure Basis for the Regulation of Glyceraldehyde-3-Phosphate Dehydrogenase Activity via the Intrinsically Disordered Protein CP12.
Structure, 19, 2011
3B20
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CRYSTAL STRUCTURE OF GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE COMPLEXED WITH NADFROM SYNECHOCOCCUS ELONGATUS"
Descriptor:Glyceraldehyde 3-phosphate dehydrogenase (NADP+), SULFATE ION, NICOTINAMIDE-ADENINE-DINUCLEOTIDE
Authors:Matsumura, H., Kai, A., Maeda, T., Inoue, T.
Deposit date:2011-07-17
Release date:2012-01-11
Last modified:2013-06-12
Method:X-RAY DIFFRACTION (2.398 Å)
Cite:Structure Basis for the Regulation of Glyceraldehyde-3-Phosphate Dehydrogenase Activity via the Intrinsically Disordered Protein CP12.
Structure, 19, 2011
1MHO
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THE 2.0 A STRUCTURE OF HOLO S100B FROM BOVINE BRAIN
Descriptor:S-100 PROTEIN, CALCIUM ION
Authors:Matsumura, H., Shiba, T., Inoue, T., Harada, S., Yasushi, K.A.I.
Deposit date:1997-09-11
Release date:1998-11-18
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:A novel mode of target recognition suggested by the 2.0 A structure of holo S100B from bovine brain.
Structure, 6, 1998
2DSN
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CRYSTAL STRUCTURE OF T1 LIPASE
Descriptor:Thermostable lipase, ZINC ION, CALCIUM ION, ...
Authors:Matsumura, H., Kai, Y.
Deposit date:2006-07-03
Release date:2007-07-17
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Novel cation-pi interaction revealed by crystal structure of thermoalkalophilic lipase
Proteins, 70, 2007
2Z5G
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CRYSTAL STRUCTURE OF T1 LIPASE F16L MUTANT
Descriptor:Thermostable lipase, ZINC ION, CALCIUM ION, ...
Authors:Matsumura, H., Yamamoto, T., Inoue, T., Kai, Y.
Deposit date:2007-07-08
Release date:2007-10-30
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Novel cation-pi interaction revealed by crystal structure of thermoalkalophilic lipase
Proteins, 70, 2007
3VP8
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CRYSTAL STRUCTURE OF THE N-TERMINAL DOMAIN OF THE YEAST GENERAL COREPRESSOR TUP1P
Descriptor:General transcriptional corepressor TUP1
Authors:Matsumura, H., Kusaka, N., Nakamura, T., Tanaka, N., Sagegami, K., Uegaki, K., Inoue, T., Mukai, Y.
Deposit date:2012-02-28
Release date:2012-06-13
Last modified:2013-07-17
Method:X-RAY DIFFRACTION (1.91 Å)
Cite:Crystal structure of the N-terminal domain of the yeast general corepressor Tup1p and its functional implications
J.Biol.Chem., 287, 2012
3VP9
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CRYSTAL STRUCTURE OF THE N-TERMINAL DOMAIN OF THE YEAST GENERAL COREPRESSOR TUP1P MUTANT
Descriptor:General transcriptional corepressor TUP1, 1,4-DIETHYLENE DIOXIDE
Authors:Matsumura, H., Kusaka, N., Nakamura, T., Tanaka, N., Sagegami, K., Uegaki, K., Inoue, T., Mukai, Y.
Deposit date:2012-02-28
Release date:2012-06-13
Last modified:2013-07-17
Method:X-RAY DIFFRACTION (1.799 Å)
Cite:Crystal structure of the N-terminal domain of the yeast general corepressor Tup1p and its functional implications
J.Biol.Chem., 287, 2012
1WDD
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CRYSTAL STRUCTURE OF ACTIVATED RICE RUBISCO COMPLEXED WITH 2-CARBOXYARABINITOL-1,5-BISPHOSPHATE
Descriptor:Ribulose bisphosphate carboxylase large chain, Ribulose bisphosphate carboxylase small chain C, MAGNESIUM ION, ...
Authors:Mizohata, E., Matsumura, H., Ueno, T., Ishida, H., Inoue, T., Makino, A., Mae, T., Kai, Y.
Deposit date:2004-05-13
Release date:2004-11-13
Last modified:2013-06-05
Method:X-RAY DIFFRACTION (1.35 Å)
Cite:Crystal structure of rice Rubisco and implications for activation induced by positive effectors NADPH and 6-phosphogluconate
J.Mol.Biol., 422, 2012
5B3F
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CRYSTAL STRUCTURE OF PHOSPHORIBULOKINASE FROM METHANOSPIRILLUM HUNGATEI
Descriptor:Phosphoribulokinase/uridine kinase, SULFATE ION
Authors:Matsumura, H., Ashida, H.
Deposit date:2016-02-22
Release date:2017-01-18
Last modified:2017-02-01
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:A RuBisCO-mediated carbon metabolic pathway in methanogenic archaea
Nat Commun, 8, 2017
3WRV
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CRYSTAL STRUCTURE OF NN DOMAIN OF RESISTANCE PROTEIN
Descriptor:Tm-1 protein
Authors:Matsumura, H., Katoh, E.
Deposit date:2014-02-27
Release date:2014-08-13
Last modified:2016-11-16
Method:X-RAY DIFFRACTION (2.75 Å)
Cite:Structural basis for the recognition-evasion arms race between Tomato mosaic virus and the resistance gene Tm-1
Proc.Natl.Acad.Sci.USA, 111, 2014
3WRX
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CRYSTAL STRUCTURE OF HELICASE COMPLEX 1
Descriptor:Tm-1 protein, Replicase large subunit, PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER, ...
Authors:Matsumura, H., Katoh, E.
Deposit date:2014-02-27
Release date:2014-08-13
Last modified:2017-11-08
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structural basis for the recognition-evasion arms race between Tomato mosaic virus and the resistance gene Tm-1
Proc.Natl.Acad.Sci.USA, 111, 2014
3WRY
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CRYSTAL STRUCTURE OF HELICASE COMPLEX 2
Descriptor:Tm-1 protein, Replicase large subunit, PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER, ...
Authors:Matsumura, H., Katoh, E.
Deposit date:2014-02-27
Release date:2014-08-13
Last modified:2017-11-08
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structural basis for the recognition-evasion arms race between Tomato mosaic virus and the resistance gene Tm-1
Proc.Natl.Acad.Sci.USA, 111, 2014
5AZ2
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CRYSTAL STRUCTURE OF THE FAB FRAGMENT OF 9E5, A MURINE MONOCLONAL ANTIBODY SPECIFIC FOR HUMAN EPIREGULIN
Descriptor:anti-human epiregulin antibody 9E5 Fab heavy chain, anti-human epiregulin antibody 9E5 Fab light chain
Authors:Kado, Y., Mizohata, E., Nagatoishi, S., Iijima, M., Shinoda, K., Miyafusa, T., Nakayama, T., Yoshizumi, T., Sugiyama, A., Kawamura, T., Lee, Y.H., Matsumura, H., Doi, H., Fujitani, H., Kodama, T., Shibasaki, Y., Tsumoto, K., Inoue, T.
Deposit date:2015-09-16
Release date:2015-12-09
Last modified:2016-03-09
Method:X-RAY DIFFRACTION (1.603 Å)
Cite:Epiregulin Recognition Mechanisms by Anti-epiregulin Antibody 9E5: STRUCTURAL, FUNCTIONAL, AND MOLECULAR DYNAMICS SIMULATION ANALYSES
J.Biol.Chem., 291, 2016
5E8D
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CRYSTAL STRUCTURE OF HUMAN EPIREGULIN IN COMPLEX WITH THE FAB FRAGMENT OF MURINE MONOCLONAL ANTIBODY 9E5
Descriptor:Proepiregulin, anti-human epiregulin antibody 9E5 Fab heavy chain, anti-human epiregulin antibody 9E5 Fab light chain, ...
Authors:Kado, Y., Mizohata, E., Nagatoishi, S., Iijima, M., Shinoda, K., Miyafusa, T., Nakayama, T., Yoshizumi, T., Sugiyama, A., Kawamura, T., Lee, Y.H., Matsumura, H., Doi, H., Fujitani, H., Kodama, T., Shibasaki, Y., Tsumoto, K., Inoue, T.
Deposit date:2015-10-14
Release date:2015-12-09
Last modified:2016-02-17
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Epiregulin Recognition Mechanisms by Anti-epiregulin Antibody 9E5: STRUCTURAL, FUNCTIONAL, AND MOLECULAR DYNAMICS SIMULATION ANALYSES
J.Biol.Chem., 291, 2016
1IR1
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CRYSTAL STRUCTURE OF SPINACH RIBULOSE-1,5-BISPHOSPHATE CARBOXYLASE/OXYGENASE (RUBISCO) COMPLEXED WITH CO2, MG2+ AND 2-CARBOXYARABINITOL-1,5-BISPHOSPHATE
Descriptor:Large subunit of Rubisco, Small subunit of Rubisco, MAGNESIUM ION, ...
Authors:Mizohata, E., Matsumura, H., Okano, Y., Kumei, M., Takuma, H., Onodera, J., Kato, K., Shibata, N., Inoue, T., Yokota, A., Kai, Y.
Deposit date:2001-08-31
Release date:2002-03-13
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structure of activated ribulose-1,5-bisphosphate carboxylase/oxygenase from green alga Chlamydomonas reinhardtii complexed with 2-carboxyarabinitol-1,5-bisphosphate.
J.Mol.Biol., 316, 2002
1IR2
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CRYSTAL STRUCTURE OF ACTIVATED RIBULOSE-1,5-BISPHOSPHATE CARBOXYLASE/OXYGENASE (RUBISCO) FROM GREEN ALGA, CHLAMYDOMONAS REINHARDTII COMPLEXED WITH 2-CARBOXYARABINITOL-1,5-BISPHOSPHATE (2-CABP)
Descriptor:Large subunit of Rubisco, Small subunit of Rubisco, MAGNESIUM ION, ...
Authors:Mizohata, E., Matsumura, H., Okano, Y., Kumei, M., Takuma, H., Onodera, J., Kato, K., Shibata, N., Inoue, T., Yokota, A., Kai, Y.
Deposit date:2001-09-03
Release date:2002-03-20
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.84 Å)
Cite:Crystal structure of activated ribulose-1,5-bisphosphate carboxylase/oxygenase from green alga Chlamydomonas reinhardtii complexed with 2-carboxyarabinitol-1,5-bisphosphate.
J.Mol.Biol., 316, 2002
1IWA
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RUBISCO FROM GALDIERIA PARTITA
Descriptor:ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit, ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit, SULFATE ION
Authors:Okano, Y., Mizohata, E., Xie, Y., Matsumura, H., Sugawara, H., Inoue, T., Yokota, A., Kai, Y.
Deposit date:2002-04-30
Release date:2003-04-30
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:X-Ray Structure of Galdieria Rubisco Complexed with one sulfate ion per active site
FEBS LETT., 527, 2002