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1DJU
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BU of 1dju by Molmil
CRYSTAL STRUCTURE OF AROMATIC AMINOTRANSFERASE FROM PYROCOCCUS HORIKOSHII OT3
Descriptor: AROMATIC AMINOTRANSFERASE, PYRIDOXAL-5'-PHOSPHATE
Authors:Matsui, I, Matsui, E, Sakai, Y, Kikuchi, H, Kawarabayashi, H.
Deposit date:1999-12-06
Release date:2001-04-11
Last modified:2018-04-18
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:The molecular structure of hyperthermostable aromatic aminotransferase with novel substrate specificity from Pyrococcus horikoshii.
J.Biol.Chem., 275, 2000
3O59
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BU of 3o59 by Molmil
DNA polymerase D large subunit DP2(1-300) from Pyrococcus horikoshii
Descriptor: DNA polymerase II large subunit
Authors:Yokoyama, H, Shen, Y, Matsui, I.
Deposit date:2010-07-28
Release date:2011-01-05
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Novel structure of an N-terminal domain that is crucial for the dimeric assembly and DNA-binding of an archaeal DNA polymerase D large subunit from Pyrococcus horikoshii
Febs Lett., 585, 2011
8GN9
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BU of 8gn9 by Molmil
SPFH domain of Pyrococcus horikoshii stomatin
Descriptor: SODIUM ION, Stomatin homolog PH1511
Authors:Komatsu, T, Matsui, I, Yokoyama, H.
Deposit date:2022-08-23
Release date:2022-12-07
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structural and mutational studies suggest key residues to determine whether stomatin SPFH domains form dimers or trimers.
Biochem Biophys Rep, 32, 2022
3BPP
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BU of 3bpp by Molmil
1510-N membrane protease K138A mutant specific for a stomatin homolog from Pyrococcus horikoshii
Descriptor: 1510-N membrane protease
Authors:Yokoyama, H, Hamamatsu, S, Fujii, S, Matsui, I.
Deposit date:2007-12-19
Release date:2008-04-29
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Novel dimer structure of a membrane-bound protease with a catalytic Ser-Lys dyad and its linkage to stomatin
J.SYNCHROTRON RADIAT., 15, 2008
3BK6
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BU of 3bk6 by Molmil
Crystal structure of a core domain of stomatin from Pyrococcus horikoshii
Descriptor: PH stomatin
Authors:Yokoyama, H, Fujii, S, Matsui, I.
Deposit date:2007-12-05
Release date:2008-02-19
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Crystal structure of a core domain of stomatin from Pyrococcus horikoshii Illustrates a novel trimeric and coiled-coil fold
J.Mol.Biol., 376, 2008
2KXE
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BU of 2kxe by Molmil
N-terminal domain of the DP1 subunit of an archaeal D-family DNA polymerase
Descriptor: DNA polymerase II small subunit
Authors:Yamasaki, K, Matsui, I.
Deposit date:2010-04-30
Release date:2010-08-18
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Solution structure of the N-terminal domain of the archaeal D-family DNA polymerase small subunit reveals evolutionary relationship to eukaryotic B-family polymerases
Febs Lett., 584, 2010
1GD9
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BU of 1gd9 by Molmil
CRYSTALL STRUCTURE OF PYROCOCCUS PROTEIN-A1
Descriptor: ASPARTATE AMINOTRANSFERASE, PYRIDOXAL-5'-PHOSPHATE
Authors:Ura, H, Harata, K, Matsui, I, Kuramitsu, S.
Deposit date:2000-09-22
Release date:2001-09-22
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Temperature dependence of the enzyme-substrate recognition mechanism.
J.Biochem., 129, 2001
1GDE
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BU of 1gde by Molmil
CRYSTAL STRUCTURE OF PYROCOCCUS PROTEIN A-1 E-FORM
Descriptor: ASPARTATE AMINOTRANSFERASE, GLUTAMIC ACID, PYRIDOXAL-5'-PHOSPHATE
Authors:Ura, H, Harata, K, Matsui, I, Kuramitsu, S.
Deposit date:2000-09-23
Release date:2001-09-23
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Temperature dependence of the enzyme-substrate recognition mechanism.
J.Biochem., 129, 2001
2DEO
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BU of 2deo by Molmil
1510-N membrane protease specific for a stomatin homolog from Pyrococcus horikoshii
Descriptor: 441aa long hypothetical nfeD protein
Authors:Yokoyama, H, Matsui, I.
Deposit date:2006-02-16
Release date:2006-05-16
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (3 Å)
Cite:Molecular Structure of a Novel Membrane Protease Specific for a Stomatin Homolog from the Hyperthermophilic Archaeon Pyrococcus horikoshii
J.Mol.Biol., 358, 2006
1MC8
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BU of 1mc8 by Molmil
Crystal Structure of Flap Endonuclease-1 R42E mutant from Pyrococcus horikoshii
Descriptor: Flap Endonuclease-1
Authors:Matsui, E, Musti, K.V, Abe, J, Yamazaki, K, Matsui, I, Harata, K.
Deposit date:2002-08-06
Release date:2002-10-16
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Molecular Structure and Novel DNA Binding Sites Located in Loops of Flap Endonuclease-1 from Pyrococcus horikoshii
J.BIOL.CHEM., 277, 2002
1VFF
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BU of 1vff by Molmil
beta-glycosidase from Pyrococcus horikoshii
Descriptor: beta-glucosidase
Authors:Akiba, T, Nishio, M, Matsui, I, Harata, K.
Deposit date:2004-04-12
Release date:2005-03-29
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:X-ray structure of a membrane-bound beta-glycosidase from the hyperthermophilic archaeon Pyrococcus horikoshii
Proteins, 57, 2004
3VIV
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BU of 3viv by Molmil
1510-N membrane-bound stomatin-specific protease K138A mutant in complex with a substrate peptide
Descriptor: 441aa long hypothetical nfeD protein, CHLORIDE ION, GLYCEROL, ...
Authors:Yokoyama, H, Matsui, I, Fujii, S.
Deposit date:2011-10-12
Release date:2012-05-23
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Crystal structure of a membrane stomatin-specific protease in complex with a substrate Peptide
Biochemistry, 51, 2012
1LK5
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BU of 1lk5 by Molmil
Structure of the D-Ribose-5-Phosphate Isomerase from Pyrococcus horikoshii
Descriptor: CHLORIDE ION, D-Ribose-5-Phosphate Isomerase, SODIUM ION
Authors:Ishikawa, K, Matsui, I, Payan, F, Cambillau, C, Ishida, H, Kawarabayasi, Y, Kikuchi, H, Roussel, A.
Deposit date:2002-04-24
Release date:2002-07-03
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:A hyperthermostable D-ribose-5-phosphate isomerase from Pyrococcus horikoshii characterization and three-dimensional structure.
Structure, 10, 2002
1LK7
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BU of 1lk7 by Molmil
Structure of D-Ribose-5-Phosphate Isomerase from in complex with phospho-erythronic acid
Descriptor: CHLORIDE ION, D-4-PHOSPHOERYTHRONIC ACID, D-Ribose-5-Phosphate Isomerase, ...
Authors:Ishikawa, K, Matsui, I, Payan, F, Cambillau, C, Ishida, H, Kawarabayasi, Y, Kikuchi, H, Roussel, A.
Deposit date:2002-04-24
Release date:2002-07-03
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2 Å)
Cite:A Hyperthermostable D-Ribose-5-Phosphate Isomerase from Pyrococcus horikoshii Characterization and Three-Dimensional Structure
STRUCTURE, 10, 2002
3WWV
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BU of 3wwv by Molmil
C-terminal domain of stomatin operon partner protein 1510-C from Pyrococcus horikoshii
Descriptor: SODIUM ION, Stomatin operon partner protein
Authors:Yokoyama, H, Matsui, I.
Deposit date:2014-06-30
Release date:2014-10-01
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Crystal structure of the stomatin operon partner protein from Pyrococcus horikoshii indicates the formation of a multimeric assembly
FEBS Open Bio, 4, 2014
3WG5
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BU of 3wg5 by Molmil
1510-N membrane-bound stomatin-specific protease K138A mutant in complex with a substrate peptide under heat treatment
Descriptor: 441aa long hypothetical nfeD protein, CHLORIDE ION, GLYCEROL, ...
Authors:Yokoyama, H, Fujii, S, Matsui, I.
Deposit date:2013-07-26
Release date:2013-10-23
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structural and biochemical analysis of a thermostable membrane-bound stomatin-specific protease.
J.Synchrotron Radiat., 20, 2013
2DLA
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BU of 2dla by Molmil
Primase large subunit amino terminal domain from Pyrococcus horikoshii
Descriptor: 397aa long hypothetical protein
Authors:Ito, N.
Deposit date:2006-04-17
Release date:2007-02-27
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Molecular basis for the subunit assembly of the primase from an archaeon Pyrococcus horikoshii
Febs J., 274, 2007
6M4B
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BU of 6m4b by Molmil
1510-N membrane-bound stomatin-specific protease S97A mutant
Descriptor: Membrane-bound protease PH1510, SULFATE ION
Authors:Yokoyama, H, Suzuki, K.
Deposit date:2020-03-06
Release date:2020-06-10
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Inactive dimeric structure of the protease domain of stomatin operon partner protein.
Acta Crystallogr.,Sect.D, 76, 2020
2EXD
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BU of 2exd by Molmil
The solution structure of the C-terminal domain of a nfeD homolog from Pyrococcus horikoshii
Descriptor: nfeD short homolog
Authors:Kuwahara, Y, Ohno, A, Morii, T, Tochio, H, Shirakawa, M, Hiroaki, H.
Deposit date:2005-11-08
Release date:2006-12-12
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:The solution structure of the C-terminal domain of NfeD reveals a novel membrane-anchored OB-fold.
Protein Sci., 17, 2008
7FI3
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BU of 7fi3 by Molmil
Archaeal oligopeptide permease A (OppA) from Thermococcus kodakaraensis in complex with an endogenous pentapeptide
Descriptor: ABC-type dipeptide/oligopeptide transport system, GLYCEROL, HEXAETHYLENE GLYCOL, ...
Authors:Yokoyama, H, Kamei, N, Konishi, K, Hara, K, Hashimoto, H.
Deposit date:2021-07-30
Release date:2022-04-13
Last modified:2022-06-22
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structural basis for peptide recognition by archaeal oligopeptide permease A.
Proteins, 90, 2022

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