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5XWD
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BU of 5xwd by Molmil
Crystal structure of the complex of 059-152-Fv and EGFR-ECD
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Epidermal growth factor receptor, ...
Authors:Matsuda, T, Ito, T, Shirouzu, M.
Deposit date:2017-06-29
Release date:2018-02-28
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.894 Å)
Cite:Cell-free synthesis of functional antibody fragments to provide a structural basis for antibody-antigen interaction
PLoS ONE, 13, 2018
5YE4
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BU of 5ye4 by Molmil
Crystal structure of the complex of di-acetylated histone H4 and 1A9D7 Fab fragment
Descriptor: 1A9D7 L chain, 1A9D7 VH CH1 chain, ZINC ION, ...
Authors:Matsuda, T, Ito, T, Wakamori, M, Umehara, T.
Deposit date:2017-09-15
Release date:2018-08-22
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.799 Å)
Cite:JQ1 affects BRD2-dependent and independent transcription regulation without disrupting H4-hyperacetylated chromatin states.
Epigenetics, 13, 2018
5YE3
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BU of 5ye3 by Molmil
Crystal structure of the complex of di-acetylated histone H4 and 2A7D9 Fab fragment
Descriptor: 2A7D9 L chain, 2A7D9 VH CH1 chain, di-acetylated histone H4
Authors:Matsuda, T, Ito, T, Wakamori, M, Umehara, T.
Deposit date:2017-09-15
Release date:2018-08-22
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:JQ1 affects BRD2-dependent and independent transcription regulation without disrupting H4-hyperacetylated chromatin states.
Epigenetics, 13, 2018
2FYH
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BU of 2fyh by Molmil
Solution structure of the 2'-5' RNA ligase-like protein from Pyrococcus furiosus
Descriptor: putative integral membrane transport protein
Authors:Okada, K, Matsuda, T, Sakamoto, T, Muto, Y, Yokoyama, S, Kanai, A, Kawai, G, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2006-02-08
Release date:2007-02-20
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Characterization of a heat-stable enzyme possessing GTP-dependent RNA ligase activity from a hyperthermophilic archaeon, Pyrococcus furiosus
Rna, 15, 2009
1IOZ
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BU of 1ioz by Molmil
Crystal Structure of the C-HA-RAS Protein Prepared by the Cell-Free Synthesis
Descriptor: GUANOSINE-5'-DIPHOSPHATE, TRANSFORMING PROTEIN P21/H-RAS-1
Authors:Kigawa, T, Yamaguchi-Nunokawa, E, Kodama, K, Matsuda, T, Yabuki, T, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2001-04-18
Release date:2001-10-03
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2 Å)
Cite:Selenomethionine incorporation into a protein by cell-free synthesis
J.STRUCT.FUNCT.GENOM., 2, 2001
2UXS
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BU of 2uxs by Molmil
2.7A crystal structure of inorganic pyrophosphatase (Rv3628) from Mycobacterium tuberculosis at pH 7.5
Descriptor: INORGANIC PYROPHOSPHATASE, PHOSPHATE ION
Authors:Cole, R.E, Cianci, M, Hall, J.F, Matsuda, T, Kigawa, T, Yokoyama, S, Hasnain, S.S, Tabernero, L.
Deposit date:2007-03-29
Release date:2008-05-27
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Crystal Structure of Rv3628: An Inorganic Pyrophosphatase from Mycobacterium Tuberculosis
To be Published
6J1C
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BU of 6j1c by Molmil
Photoswitchable fluorescent protein Gamillus, N150C/T204V double mutant, off-state
Descriptor: CHLORIDE ION, GLYCEROL, Green fluorescent protein
Authors:Nakashima, R, Shinoda, H, Matsuda, T, Nagai, T.
Deposit date:2018-12-28
Release date:2019-11-06
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.09 Å)
Cite:Acid-Tolerant Reversibly Switchable Green Fluorescent Protein for Super-resolution Imaging under Acidic Conditions.
Cell Chem Biol, 26, 2019
6J1B
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BU of 6j1b by Molmil
Photoswitchable fluorescent protein Gamillus, N150C/T204V double mutant, on-state
Descriptor: CHLORIDE ION, GLYCEROL, Green fluorescent protein, ...
Authors:Nakashima, R, Shinoda, H, Matsuda, T, Nagai, T.
Deposit date:2018-12-28
Release date:2019-11-06
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.99 Å)
Cite:Acid-Tolerant Reversibly Switchable Green Fluorescent Protein for Super-resolution Imaging under Acidic Conditions.
Cell Chem Biol, 26, 2019
6J1A
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BU of 6j1a by Molmil
Photoswitchable fluorescent protein Gamillus, off-state
Descriptor: CHLORIDE ION, GLYCEROL, Green fluorescent protein, ...
Authors:Nakashima, R, Sakurai, K, shinoda, H, Matsuda, T, Nagai, T.
Deposit date:2018-12-28
Release date:2019-11-06
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.96 Å)
Cite:Acid-Tolerant Reversibly Switchable Green Fluorescent Protein for Super-resolution Imaging under Acidic Conditions.
Cell Chem Biol, 26, 2019
6ISV
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BU of 6isv by Molmil
Structure of acetophenone reductase from Geotrichum candidum NBRC 4597 in complex with NAD
Descriptor: Acetophenone reductase, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, ZINC ION
Authors:Koesoema, A.A, Sugiyama, Y, Senda, M, Senda, T, Matsuda, T.
Deposit date:2018-11-19
Release date:2019-09-11
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structural basis for a highly (S)-enantioselective reductase towards aliphatic ketones with only one carbon difference between side chain.
Appl.Microbiol.Biotechnol., 103, 2019
3A8S
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BU of 3a8s by Molmil
Crystal structure analysis of the fluorescent protein KillerRed
Descriptor: KillerRed
Authors:Sakai, N, Kitago, Y, Takemoto, K, Matsuda, T, Nagai, T.
Deposit date:2009-10-08
Release date:2010-04-14
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Crystal structure analysis of the fluorescent protein KillerRed
To be Published
6JXF
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BU of 6jxf by Molmil
Photoswitchable fluorescent protein Gamillus, off-state (pH7.0)
Descriptor: CHLORIDE ION, GLYCEROL, Green fluorescent protein, ...
Authors:Nakashima, R, Sakurai, K, shinoda, H, Matsuda, T, Nagai, T.
Deposit date:2019-04-23
Release date:2019-11-06
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Acid-Tolerant Reversibly Switchable Green Fluorescent Protein for Super-resolution Imaging under Acidic Conditions.
Cell Chem Biol, 26, 2019
1V9J
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BU of 1v9j by Molmil
Solution structure of a BolA-like protein from Mus musculus
Descriptor: BolA-like protein RIKEN cDNA 1110025L05
Authors:Kasai, T, Inoue, M, Koshiba, S, Yabuki, T, Aoki, M, Nunokawa, E, Seki, E, Matsuda, T, Matsuda, N, Tomo, Y, Shirouzu, M, Terada, T, Obayashi, N, Hamana, H, Shinya, N, Tatsuguchi, A, Yasuda, S, Yoshida, M, Hirota, H, Matsuo, Y, Tani, K, Suzuki, H, Arakawa, T, Carninci, P, Kawai, J, Hayashizaki, Y, Kigawa, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2004-01-26
Release date:2004-02-10
Last modified:2023-12-27
Method:SOLUTION NMR
Cite:Solution structure of a BolA-like protein from Mus musculus
Protein Sci., 13, 2004
3WCK
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BU of 3wck by Molmil
Crystal structure of monomeric photosensitizing fluorescent protein, Supernova
Descriptor: Monomeric photosenitizing fluorescent protein supernova
Authors:Sakai, N, Matsuda, T, Takemoto, K, Nagai, T.
Deposit date:2013-05-27
Release date:2013-10-02
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:SuperNova, a monomeric photosensitizing fluorescent protein for chromophore-assisted light inactivation
Sci Rep, 3, 2013
3UG0
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BU of 3ug0 by Molmil
Crystal structure of a Trp-less green fluorescent protein translated by the simplified genetic code
Descriptor: Green fluorescent protein
Authors:Kawahara-Kobayashi, A, Araiso, Y, Matsuda, T, Yokoyama, S, Kigawa, T, Nureki, O, Kiga, D.
Deposit date:2011-11-02
Release date:2012-10-17
Last modified:2023-12-06
Method:X-RAY DIFFRACTION (2.093 Å)
Cite:Simplification of the genetic code: restricted diversity of genetically encoded amino acids.
Nucleic Acids Res., 40, 2012
3UFZ
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BU of 3ufz by Molmil
Crystal structure of a Trp-less green fluorescent protein translated by the universal genetic code
Descriptor: Green fluorescent protein
Authors:Kawahara-Kobayashi, A, Araiso, Y, Matsuda, T, Yokoyama, S, Kigawa, T, Nureki, O, Kiga, D.
Deposit date:2011-11-02
Release date:2012-10-17
Last modified:2023-12-06
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Simplification of the genetic code: restricted diversity of genetically encoded amino acids.
Nucleic Acids Res., 40, 2012
1VDY
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BU of 1vdy by Molmil
NMR Structure of the hypothetical ENTH-VHS domain At3g16270 from Arabidopsis thaliana
Descriptor: hypothetical protein (RAFL09-17-B18)
Authors:Lopez-Mendez, B, Pantoja-Uceda, D, Tomizawa, T, Koshiba, S, Kigawa, T, Shirouzu, M, Terada, T, Inoue, M, Yabuki, T, Aoki, M, Seki, E, Matsuda, T, Hirota, H, Yoshida, M, Tanaka, A, Osanai, T, Seki, M, Shinozaki, K, Yokoyama, S, Guntert, P, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2004-03-25
Release date:2005-05-03
Last modified:2023-12-27
Method:SOLUTION NMR
Cite:Solution structure of the hypothetical ENTH-VHS domain AT3G16270 from arabidopsis thaliana
To be Published
2CZR
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BU of 2czr by Molmil
Crystal structure of TBP-interacting protein (Tk-TIP26) and implications for its inhibition mechanism of the interaction between TBP and TATA-DNA
Descriptor: GLYCEROL, TBP-interacting protein, ZINC ION
Authors:Yamamoto, T, Matsuda, T, Inoue, T, Matsumura, H, Morikawa, M, Kanaya, S, Kai, Y.
Deposit date:2005-07-15
Release date:2006-02-14
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structure of TBP-interacting protein (Tk-TIP26) and implications for its inhibition mechanism of the interaction between TBP and TATA-DNA
Protein Sci., 15, 2006
1UGK
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BU of 1ugk by Molmil
Solution structure of the first C2 domain of synaptotagmin IV from human fetal brain (KIAA1342)
Descriptor: Synaptotagmin IV
Authors:Nagashima, T, Hayashi, F, Shirouzu, M, Terada, T, Kigawa, T, Inoue, M, Yabuki, T, Aoki, M, Seki, E, Matsuda, T, Hirota, H, Yoshida, M, Tanaka, A, Osanai, T, Matsuo, Y, Ohara, O, Nagase, T, Kikuno, R, Nakayama, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2003-06-16
Release date:2003-12-16
Last modified:2023-12-27
Method:SOLUTION NMR
Cite:Solution structure of the first C2 domain of synaptotagmin IV from human fetal brain (KIAA1342)
To be Published
1UG1
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BU of 1ug1 by Molmil
SH3 domain of Hypothetical protein BAA76854.1
Descriptor: KIAA1010 protein
Authors:Nagata, T, Muto, Y, Kamewari, Y, Shirouzu, M, Terada, T, Kigawa, T, Inoue, M, Yabuki, T, Aoki, M, Seki, E, Matsuda, T, Hirota, H, Yoshida, M, Kobayashi, N, Tanaka, A, Osanai, T, Matsuo, Y, Ohara, O, Nagase, T, Kikuno, R, Nakayama, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2003-06-11
Release date:2003-12-11
Last modified:2023-12-27
Method:SOLUTION NMR
Cite:NMR structure of SH3 domain of Hypothetical protein BAA76854.1
To be Published
1UGJ
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BU of 1ugj by Molmil
Solution structure of a murine hypothetical protein from RIKEN cDNA 2310057J16
Descriptor: RIKEN cDNA 2310057J16 protein
Authors:Nagashima, T, Hayashi, F, Shirouzu, M, Terada, T, Kigawa, T, Inoue, M, Yabuki, T, Aoki, M, Seki, E, Matsuda, T, Hirota, H, Yoshida, M, Tanaka, A, Osanai, T, Arakawa, T, Carninci, P, Kawai, J, Hayashizaki, Y, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2003-06-16
Release date:2004-08-03
Last modified:2023-12-27
Method:SOLUTION NMR
Cite:Solution structure of a murine hypothetical protein from RIKEN cDNA 2310057J16
To be Published
1UG8
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BU of 1ug8 by Molmil
NMR structure of the R3H domain from Poly(A)-specific Ribonuclease
Descriptor: Poly(A)-specific Ribonuclease
Authors:Nagata, T, Muto, Y, Hayami, N, Uda, H, Shirouzu, M, Terada, T, Kigawa, T, Inoue, M, Yabuki, T, Aoki, M, Seki, E, Matsuda, T, Hirota, H, Yoshida, M, Kobayashi, N, Tanaka, A, Osanai, T, Matsuo, Y, Arakawa, T, Carninci, P, Kawai, J, Hayashizaki, Y, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2003-06-15
Release date:2004-08-17
Last modified:2023-12-27
Method:SOLUTION NMR
Cite:NMR structure of the R3H domain from Poly(A)-specific Ribonuclease
To be Published
1UHS
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BU of 1uhs by Molmil
Solution structure of mouse homeodomain-only protein HOP
Descriptor: homeodomain only protein
Authors:Saito, K, Koshiba, S, Inoue, M, Shirouzu, M, Terada, T, Yabuki, T, Aoki, M, Matsuda, T, Seki, E, Hirota, H, Yoshida, M, Tanaka, A, Osanai, T, Arakawa, T, Carninci, P, Kawai, J, Hayashizaki, Y, Kigawa, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2003-07-10
Release date:2004-07-10
Last modified:2023-12-27
Method:SOLUTION NMR
Cite:Solution structure of mouse homeodomain-only protein HOP
To be Published
1UFW
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BU of 1ufw by Molmil
Solution structure of RNP domain in Synaptojanin 2
Descriptor: Synaptojanin 2
Authors:He, F, Muto, Y, Ushikoshi, R, Shirouzu, M, Terada, T, Kigawa, T, Inoue, M, Yabuki, T, Aoki, M, Seki, E, Matsuda, T, Hirota, H, Yoshida, M, Kobayashi, N, Tanaka, A, Osanai, T, Matsuo, Y, Ohara, O, Nagase, T, Kikuno, R, Nakayama, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2003-06-10
Release date:2003-12-10
Last modified:2023-12-27
Method:SOLUTION NMR
Cite:Solution structure of RNP domain in Synaptojanin 2
To be Published
1UFN
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BU of 1ufn by Molmil
Solution structure of the SAND domain of the putative nuclear protein homolog (5830484A20Rik)
Descriptor: putative nuclear protein homolog 5830484A20Rik
Authors:Tochio, N, Kobayashi, N, Koshiba, S, Kigawa, T, Inoue, M, Shirouzu, M, Terada, T, Yabuki, T, Aoki, M, Seki, E, Matsuda, T, Hirota, H, Yoshida, M, Tanaka, A, Osanai, T, Matsuo, Y, Arakawa, T, Carninci, P, Kawai, J, Hayashizaki, Y, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2003-06-02
Release date:2004-06-22
Last modified:2023-12-27
Method:SOLUTION NMR
Cite:Solution structure of the SAND domain of the putative nuclear protein homolog (5830484A20Rik)
To be Published

 

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