Author results

2RPD
  • Download 2rpd
  • View 2rpd
Molmil generated image of 2rpd
MHR1P-BOUND SSDNA
Descriptor:DNA (5'-D(*DTP*DAP*DCP*DG)-3')
Authors:Masuda, T., Ito, Y., Shibata, T., Mikawa, T.
Deposit date:2008-05-15
Release date:2009-05-26
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:A non-canonical DNA structure enables homologous recombination in various genetic systems
J.Biol.Chem., 284, 2009
2RPE
  • Download 2rpe
  • View 2rpe
Molmil generated image of 2rpe
HSRAD51-BOUND SSDNA
Descriptor:DNA (5'-D(*DTP*DAP*DCP*DG)-3')
Authors:Masuda, T., Ito, Y., Shibata, T., Mikawa, T.
Deposit date:2008-05-15
Release date:2009-05-26
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:A non-canonical DNA structure enables homologous recombination in various genetic systems
J.Biol.Chem., 284, 2009
2RPF
  • Download 2rpf
  • View 2rpf
Molmil generated image of 2rpf
RECO-BOUND SSDNA
Descriptor:DNA (5'-D(*DTP*DAP*DCP*DG)-3')
Authors:Masuda, T., Ito, Y., Shibata, T., Mikawa, T.
Deposit date:2008-05-15
Release date:2009-05-26
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:A non-canonical DNA structure enables homologous recombination in various genetic systems
J.Biol.Chem., 284, 2009
2RPH
  • Download 2rph
  • View 2rph
Molmil generated image of 2rph
RECT-BOUND SSDNA
Descriptor:DNA (5'-D(*DTP*DAP*DCP*DG)-3')
Authors:Masuda, T., Ito, Y., Shibata, T., Mikawa, T.
Deposit date:2008-05-15
Release date:2009-05-26
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:A non-canonical DNA structure enables homologous recombination in various genetic systems
J.Biol.Chem., 284, 2009
5KXU
  • Download 5kxu
  • View 5kxu
Molmil generated image of 5kxu
STRUCTURE PROTEINASE K DETERMINED BY SACLA
Descriptor:Proteinase K, CALCIUM ION, NITRATE ION
Authors:Masuda, T., Suzuki, M., Inoue, S., Numata, K., Sugahara, M.
Deposit date:2016-07-20
Release date:2017-06-07
Last modified:2018-01-24
Method:X-RAY DIFFRACTION (1.2 Å)
Cite:Atomic resolution structure of serine protease proteinase K at ambient temperature.
Sci Rep, 7, 2017
5KXV
  • Download 5kxv
  • View 5kxv
Molmil generated image of 5kxv
STRUCTURE PROTEINASE K AT 0.98 ANGSTROMS
Descriptor:Proteinase K, NITRATE ION, GLYCEROL, ...
Authors:Masuda, T., Suzuki, M., Inoue, S., Numata, K., Sugahara, M.
Deposit date:2016-07-20
Release date:2017-06-07
Method:X-RAY DIFFRACTION (0.98 Å)
Cite:Atomic resolution structure of serine protease proteinase K at ambient temperature.
Sci Rep, 7, 2017
3A68
  • Download 3a68
  • View 3a68
Molmil generated image of 3a68
CRYSTAL STRUCTURE OF PLANT FERRITIN REVEALS A NOVEL METAL BINDING SITE THAT FUNCTIONS AS A TRANSIT SITE FOR METAL TRANSFER IN FERRITIN
Descriptor:Ferritin-4, chloroplastic, CALCIUM ION, ...
Authors:Masuda, T., Goto, F., Yoshihara, T., Mikami, B.
Deposit date:2009-08-26
Release date:2009-12-08
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structure of plant ferritin reveals a novel metal binding site that functions as a transit site for metal transfer in ferritin
J.Biol.Chem., 285, 2010
3A9Q
  • Download 3a9q
  • View 3a9q
Molmil generated image of 3a9q
CRYSTAL STRUCTURE ANALYSIS OF E173A VARIANT OF THE SOYBEAN FERRITIN SFER4
Descriptor:Ferritin-4, chloroplastic, CALCIUM ION, ...
Authors:Masuda, T., Goto, F., Yoshihara, T., Mikami, B.
Deposit date:2009-11-05
Release date:2009-12-08
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.896 Å)
Cite:Crystal structure of plant ferritin reveals a novel metal binding site that functions as a transit site for metal transfer in ferritin
J.Biol.Chem., 285, 2010
3AJO
  • Download 3ajo
  • View 3ajo
Molmil generated image of 3ajo
CRYSTAL STRUCTURE OF WILD-TYPE HUMAN FERRITIN H CHAIN
Descriptor:Ferritin heavy chain, MAGNESIUM ION
Authors:Masuda, T., Mikami, B.
Deposit date:2010-06-11
Release date:2010-08-25
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.52 Å)
Cite:The universal mechanism for iron translocation to the ferroxidase site in ferritin, which is mediated by the well conserved transit site
Biochem.Biophys.Res.Commun., 400, 2010
3AJP
  • Download 3ajp
  • View 3ajp
Molmil generated image of 3ajp
CRYSTAL STRUCTURE OF HUMAN H FERRITIN E140A MUTANT
Descriptor:Ferritin heavy chain, MAGNESIUM ION
Authors:Masuda, T., Mikami, B.
Deposit date:2010-06-11
Release date:2010-08-25
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.901 Å)
Cite:The universal mechanism for iron translocation to the ferroxidase site in ferritin, which is mediated by the well conserved transit site
Biochem.Biophys.Res.Commun., 400, 2010
3AJQ
  • Download 3ajq
  • View 3ajq
Molmil generated image of 3ajq
CRYSTAL STRUCTURE OF HUMAN H FERRITIN E140Q MUTANT
Descriptor:Ferritin heavy chain, MAGNESIUM ION
Authors:Masuda, T., Mikami, B.
Deposit date:2010-06-11
Release date:2010-08-25
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.58 Å)
Cite:The universal mechanism for iron translocation to the ferroxidase site in ferritin, which is mediated by the well conserved transit site
Biochem.Biophys.Res.Commun., 400, 2010
3WKY
  • Download 3wky
  • View 3wky
Molmil generated image of 3wky
CRYSTAL STRUCTURE OF HEMOLYMPH TYPE PROPHENOLOXIDASE (PROPOB) FROM CRUSTACEAN
Descriptor:Prophenoloxidase b, N-ACETYL-D-GLUCOSAMINE, CU2-O2 CLUSTER, ...
Authors:Masuda, T., Mikami, B.
Deposit date:2013-11-02
Release date:2014-04-23
Method:X-RAY DIFFRACTION (1.801 Å)
Cite:Crystal structure of a crustacean prophenoloxidase provides a clue to understanding the functionality of the type 3 copper proteins.
Febs J., 2014
3AL7
  • Download 3al7
  • View 3al7
Molmil generated image of 3al7
RECOMBINANT THAUMATIN I AT 1.1 A
Descriptor:Thaumatin I, L(+)-TARTARIC ACID, GLYCEROL
Authors:Masuda, T., Mikami, B., Kitabatake, N.
Deposit date:2010-07-27
Release date:2011-06-08
Last modified:2011-11-02
Method:X-RAY DIFFRACTION (1.1 Å)
Cite:High-resolution structure of the recombinant sweet-tasting protein thaumatin I
Acta Crystallogr.,Sect.F, 67, 2011
3ALD
  • Download 3ald
  • View 3ald
Molmil generated image of 3ald
CRYSTAL STRUCTURE OF SWEET-TASTING PROTEIN THAUMATIN I AT 1.10 A
Descriptor:Thaumatin I, L(+)-TARTARIC ACID, GLYCEROL
Authors:Masuda, T., Mikami, B., Kitabatake, N.
Deposit date:2010-07-29
Release date:2011-06-08
Last modified:2011-11-02
Method:X-RAY DIFFRACTION (1.1 Å)
Cite:High-resolution structure of the recombinant sweet-tasting protein thaumatin I
Acta Crystallogr.,Sect.F, 67, 2011
3AOK
  • Download 3aok
  • View 3aok
Molmil generated image of 3aok
CRYSTAL STRUCTURE OF SWEET-TASTING PROTEIN THAUMATIN II
Descriptor:Thaumatin-2, L(+)-TARTARIC ACID, GLYCEROL
Authors:Masuda, T., Mikami, B., Kitabatake, N.
Deposit date:2010-10-01
Release date:2011-07-27
Method:X-RAY DIFFRACTION (1.27 Å)
Cite:Crystal structure of the sweet-tasting protein thaumatin II at 1.27A
Biochem.Biophys.Res.Commun., 410, 2011
3VHF
  • Download 3vhf
  • View 3vhf
Molmil generated image of 3vhf
PLANT THAUMATIN I AT PH 8.0
Descriptor:Thaumatin I, GLYCEROL
Authors:Masuda, T., Mikami, B., Kitabatake, N., Tani, F.
Deposit date:2011-08-24
Release date:2012-05-16
Method:X-RAY DIFFRACTION (1.39 Å)
Cite:Atomic structure of the sweet-tasting protein thaumatin I at pH 8.0 reveals the large disulfide-rich region in domain II to be sensitive to a pH change
Biochem.Biophys.Res.Commun., 419, 2012
3VHG
  • Download 3vhg
  • View 3vhg
Molmil generated image of 3vhg
RECOMBINANT THAUMATIN I AT PH 8.0
Descriptor:Thaumatin I, GLYCEROL
Authors:Masuda, T., Mikami, B., Kitabatake, N., Tani, F.
Deposit date:2011-08-24
Release date:2012-08-29
Method:X-RAY DIFFRACTION (1 Å)
Cite:Recombinat thaumatin I at pH 8.0
To be Published
3VJQ
  • Download 3vjq
  • View 3vjq
Molmil generated image of 3vjq
RECOMBINANT THAUMATIN AT PH 8.0 WITH HYDROGEN ATOMS
Descriptor:Thaumatin I, GLYCEROL
Authors:Masuda, T., Mikami, B., Tani, F.
Deposit date:2011-10-27
Release date:2012-05-16
Method:X-RAY DIFFRACTION (1 Å)
Cite:Atomic structure of the sweet-tasting protein thaumatin I at pH 8.0 reveals the large disulfide-rich region in domain II to be sensitive to a pH change
Biochem.Biophys.Res.Commun., 419, 2012
3VNX
  • Download 3vnx
  • View 3vnx
Molmil generated image of 3vnx
CRYSTAL STRUCTURE OF FERRITIN FROM MULTICELLULAR GREEN ALGAE, ULVA PERTUSA.
Descriptor:ferritin, CALCIUM ION
Authors:Masuda, T., Morimoto, S.I., Mikami, B., Toyohara, H.
Deposit date:2012-01-18
Release date:2012-03-28
Last modified:2013-07-31
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:The extension peptide of plant ferritin from sea lettuce contributes to shell stability and surface hydrophobicity.
Protein Sci., 21, 2012
3WOU
  • Download 3wou
  • View 3wou
Molmil generated image of 3wou
CRYSTAL STRUCTURE OF THE RECOMBINANT THAUMATIN II AT 0.99 A
Descriptor:Thaumatin-2, L(+)-TARTARIC ACID, GLYCEROL
Authors:Masuda, T., Mikami, B., Tani, F.
Deposit date:2013-12-30
Release date:2014-10-22
Method:X-RAY DIFFRACTION (0.99 Å)
Cite:Atomic structure of recombinant thaumatin II reveals flexible conformations in two residues critical for sweetness and three consecutive glycine residues
Biochimie, 106, 2014
3X3O
  • Download 3x3o
  • View 3x3o
Molmil generated image of 3x3o
RECOMBINANT THAUMATIN IN THE PRESENCE OF 0.5M PST AT 298K
Descriptor:thaumatin I, L(+)-TARTARIC ACID
Authors:Masuda, T., Okubo, K., Mikami, B.
Deposit date:2015-01-26
Release date:2016-02-03
Method:X-RAY DIFFRACTION (1.48 Å)
Cite:Structure of the recombinant thaumatin in the presence of PST at room temperature
To be Published
3X3P
  • Download 3x3p
  • View 3x3p
Molmil generated image of 3x3p
RECOMBINANT THAUMATIN IN THE PRESENCE OF 0.75M PST AT 293K
Descriptor:thaumatin I, L(+)-TARTARIC ACID
Authors:Masuda, T., Okubo, K., Mikami, B.
Deposit date:2015-01-26
Release date:2016-02-03
Method:X-RAY DIFFRACTION (1.48 Å)
Cite:Recombinant thaumatin in the presence of 0.75M PST at 293K
To be Published
3X3Q
  • Download 3x3q
  • View 3x3q
Molmil generated image of 3x3q
STRUCTURE OF RECOMBINANT THAUMATIN IN THE PRESENCE OF 1.0M PST, PH7 AT 293K
Descriptor:thaumatin I, L(+)-TARTARIC ACID
Authors:Masuda, T., Okubo, K., Mikami, B.
Deposit date:2015-01-26
Release date:2016-02-03
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Structure of the recombinant thaumatin in the presence of PST at room temperature
To be Published
3X3R
  • Download 3x3r
  • View 3x3r
Molmil generated image of 3x3r
RECOMBINANT THAUMATIN IN THE PRESENCE OF 1.0M PST AND SOAKED 1 HR AT 293K
Descriptor:thaumatin I, L(+)-TARTARIC ACID
Authors:Masuda, T., Okubo, K., Mikami, B.
Deposit date:2015-01-26
Release date:2016-02-03
Method:X-RAY DIFFRACTION (1.52 Å)
Cite:Structure of the recombinant thaumatin in the presence of PST at room temperature
To be Published
3X3S
  • Download 3x3s
  • View 3x3s
Molmil generated image of 3x3s
RECOMBINANT THAUMATIN IN THE PRESENCE OF 1.5M PST AT 293K
Descriptor:thaumatin I, L(+)-TARTARIC ACID
Authors:Masuda, T., Okubo, K., Mikami, B.
Deposit date:2015-01-26
Release date:2016-02-03
Method:X-RAY DIFFRACTION (1.46 Å)
Cite:Structure of the recombinant thaumatin in the presence of PST at room temperature
To be Published