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6K84
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BU of 6k84 by Molmil
Structure of anti-prion RNA aptamer
Descriptor: RNA (25-MER)
Authors:Mashima, T, Lee, J.H, Hayashi, T, Nagata, T, Kinoshita, M, Katahira, M.
Deposit date:2019-06-11
Release date:2020-04-01
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Development and structural determination of an anti-PrPCaptamer that blocks pathological conformational conversion of prion protein.
Sci Rep, 10, 2020
2RSK
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RNA aptamer against prion protein in complex with the partial binding peptide
Descriptor: RNA (5'-R(*GP*GP*AP*GP*GP*AP*GP*GP*AP*GP*GP*A)-3'), partial binding peptide of Major prion protein
Authors:Mashima, T, Nishikawa, F, Kamatari, Y.O, Fujiwara, H, Nishikawa, S, Kuwata, K, Katahira, M.
Deposit date:2012-03-08
Release date:2013-02-13
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Anti-prion activity of an RNA aptamer and its structural basis
Nucleic Acids Res., 41, 2013
2RQJ
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Quadruplex structure of an RNA aptamer against bovine prion protein
Descriptor: RNA (5'-R(*GP*GP*AP*GP*GP*AP*GP*GP*AP*GP*GP*A)-3')
Authors:Katahira, M, Mashima, T, Matsugami, A, Nishikawa, F, Nishikawa, S.
Deposit date:2009-07-18
Release date:2009-11-17
Last modified:2022-03-16
Method:SOLUTION NMR
Cite:Unique quadruplex structure and interaction of an RNA aptamer against bovine prion protein
Nucleic Acids Res., 37, 2009
8KAD
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Crystal structure of an antibody light chain tetramer with 3D domain swapping
Descriptor: Antibody light chain
Authors:Sakai, T, Mashima, T, Kobayashi, N, Ogata, H, Uda, T, Hifumi, E, Hirota, S.
Deposit date:2023-08-02
Release date:2023-12-27
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural and thermodynamic insights into antibody light chain tetramer formation through 3D domain swapping.
Nat Commun, 14, 2023
2RU7
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BU of 2ru7 by Molmil
Refined structure of RNA aptamer in complex with the partial binding peptide of prion protein
Descriptor: P16 peptide from Major prion protein, RNA_(5'-R(*GP*GP*AP*GP*GP*AP*GP*GP*AP*GP*GP*A)-3')
Authors:Hayashi, T, Oshima, H, Mashima, T, Nagata, T, Katahira, M, Kinoshita, M.
Deposit date:2013-12-24
Release date:2014-05-21
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Binding of an RNA aptamer and a partial peptide of a prion protein: crucial importance of water entropy in molecular recognition.
Nucleic Acids Res., 42, 2014

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