Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
3A5X
DownloadVisualize
BU of 3a5x by Molmil
L-type straight flagellar filament made of full-length flagellin
Descriptor: Flagellin
Authors:Maki-Yonekura, S, Yonekura, K, Namba, K.
Deposit date:2009-08-13
Release date:2010-03-16
Last modified:2024-03-13
Method:ELECTRON MICROSCOPY (4 Å)
Cite:Conformational change of flagellin for polymorphic supercoiling of the flagellar filament
Nat.Struct.Mol.Biol., 17, 2010
5ZFP
DownloadVisualize
BU of 5zfp by Molmil
Structure of the ExbB/ExbD hexameric complex
Descriptor: Biopolymer transport protein ExbB
Authors:Maki-Yonekura, S, Matsuoka, R, Yonekura, K.
Deposit date:2018-03-06
Release date:2018-05-09
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.84 Å)
Cite:Hexameric and pentameric complexes of the ExbBD energizer in the Ton system.
Elife, 7, 2018
8J5A
DownloadVisualize
BU of 8j5a by Molmil
Single-particle cryo-EM structure of mouse apoferritin at 1.19 Angstrom resolution (Dataset A)
Descriptor: Ferritin heavy chain, SODIUM ION
Authors:Kawakami, K, Maki-Yonekura, S, Hamaguchi, T, Takaba, K, Yonekura, K.
Deposit date:2023-04-21
Release date:2023-07-12
Method:ELECTRON MICROSCOPY (1.19 Å)
Cite:Measurement of charges and chemical bonding in a cryo-EM structure.
Commun Chem, 6, 2023
5ZFU
DownloadVisualize
BU of 5zfu by Molmil
Structure of the ExbB/ExbD hexameric complex (ExbB6ExbD3TM)
Descriptor: 22-mer peptide from Biopolymer transport protein ExbD, Biopolymer transport protein ExbB
Authors:Yonekura, K, Yamashita, Y, Matsuoka, R, Maki-Yonekura, S.
Deposit date:2018-03-07
Release date:2018-05-09
Last modified:2024-03-27
Method:ELECTRON MICROSCOPY (6.7 Å)
Cite:Hexameric and pentameric complexes of the ExbBD energizer in the Ton system.
Elife, 7, 2018
5ZFV
DownloadVisualize
BU of 5zfv by Molmil
Structure of the ExbB/ExbD pentameric complex (ExbB5ExbD1TM)
Descriptor: 22-mer peptide from Biopolymer transport protein ExbD, Biopolymer transport protein ExbB
Authors:Yonekura, K, Yamashita, Y, Matsuoka, R, Maki-Yonekura, S.
Deposit date:2018-03-07
Release date:2018-05-09
Method:ELECTRON MICROSCOPY (7.1 Å)
Cite:Hexameric and pentameric complexes of the ExbBD energizer in the Ton system.
Elife, 7, 2018
7DI8
DownloadVisualize
BU of 7di8 by Molmil
Electron crystallographic structure of Catalase using a direct electron detector at 300 kV
Descriptor: Catalase, NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, PROTOPORPHYRIN IX CONTAINING FE
Authors:Takaba, K, Maki-Yonekura, S, Yonekura, K.
Deposit date:2020-11-18
Release date:2020-12-09
Last modified:2024-03-27
Method:ELECTRON CRYSTALLOGRAPHY (3.2 Å)
Cite:Protein and Organic-Molecular Crystallography With 300kV Electrons on a Direct Electron Detector.
Front Mol Biosci, 7, 2020
1UCU
DownloadVisualize
BU of 1ucu by Molmil
R-type straight flagellar filament made of full-length flagellin
Descriptor: phase 1 Flagellin
Authors:Yonekura, K, Maki-Yonekura, S, Namba, K.
Deposit date:2003-04-22
Release date:2003-08-12
Last modified:2024-03-13
Method:ELECTRON MICROSCOPY (4 Å)
Cite:Complete atomic model of the bacterial flagellar filament by electron cryomicroscopy
NATURE, 424, 2003
7CHK
DownloadVisualize
BU of 7chk by Molmil
Cryo-EM Structure of Apple Latent Spherical Virus (ALSV)
Descriptor: VP20 protein, VP24 protein, VP25 protein
Authors:Naitow, H, Hamaguchi, T, Maki-Yonekura, S, Isogai, M, Yoshikawa, N, Yonekura, K.
Deposit date:2020-07-06
Release date:2020-11-04
Last modified:2024-03-27
Method:ELECTRON MICROSCOPY (2.87 Å)
Cite:Apple latent spherical virus structure with stable capsid frame supports quasi-stable protrusions expediting genome release.
Commun Biol, 3, 2020
6JNT
DownloadVisualize
BU of 6jnt by Molmil
Catalase structure determined by eEFD (dataset 1)
Descriptor: Catalase, NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, PROTOPORPHYRIN IX CONTAINING FE
Authors:Yonekura, K, Maki-Yonekura, S.
Deposit date:2019-03-18
Release date:2019-04-24
Last modified:2024-03-27
Method:ELECTRON CRYSTALLOGRAPHY (3 Å)
Cite:A new cryo-EM system for electron 3D crystallography by eEFD.
J.Struct.Biol., 206, 2019
6JNU
DownloadVisualize
BU of 6jnu by Molmil
Catalase structure determined by eEFD (dataset 2)
Descriptor: Catalase, NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, PROTOPORPHYRIN IX CONTAINING FE
Authors:Yonekura, K, Maki-Yonekura, S.
Deposit date:2019-03-18
Release date:2019-04-24
Last modified:2024-03-27
Method:ELECTRON CRYSTALLOGRAPHY (3.001 Å)
Cite:A new cryo-EM system for electron 3D crystallography by eEFD.
J.Struct.Biol., 206, 2019
7VI4
DownloadVisualize
BU of 7vi4 by Molmil
Electron crystallographic structure of TIA-1 prion-like domain, A381T mutant
Descriptor: TIA-1 prion-like domain
Authors:Takaba, K, Maki-Yonekura, S, Sekiyama, N, Imamura, K, Kodama, T, Tochio, H, Yonekura, K.
Deposit date:2021-09-24
Release date:2022-09-28
Method:ELECTRON CRYSTALLOGRAPHY (0.95 Å)
Cite:ALS mutations in the TIA-1 prion-like domain trigger highly condensed pathogenic structures.
Proc.Natl.Acad.Sci.USA, 119, 2022
7VI5
DownloadVisualize
BU of 7vi5 by Molmil
Electron crystallographic structure of TIA-1 prion-like domain, wild type sequence
Descriptor: TIA-1 prion-like domain
Authors:Takaba, K, Maki-Yonekura, S, Sekiyama, N, Imamura, K, Kodama, T, Tochio, H, Yonekura, K.
Deposit date:2021-09-24
Release date:2022-09-28
Last modified:2023-11-29
Method:ELECTRON CRYSTALLOGRAPHY (1.761 Å)
Cite:ALS mutations in the TIA-1 prion-like domain trigger highly condensed pathogenic structures.
Proc.Natl.Acad.Sci.USA, 119, 2022
3VU3
DownloadVisualize
BU of 3vu3 by Molmil
Crystal structure of the Hfq and catalase HPII complex
Descriptor: Catalase HPII, PROTOPORPHYRIN IX CONTAINING FE, Protein hfq
Authors:Watanabe, M, Yonekura, K.
Deposit date:2012-06-15
Release date:2013-11-20
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.85 Å)
Cite:Post-Transcriptional Regulator Hfq Binds Catalase HPII: Crystal Structure of the Complex
Plos One, 8, 2013

217705

PDB entries from 2024-03-27

PDB statisticsPDBj update infoContact PDBjnumon