Author results

1WT5
  • Download 1wt5
  • View 1wt5
Molmil generated image of 1wt5
THE CRYSTAL STRUCTURE OF A HUMANIZED ANTIBODY FV 528
Descriptor:ANTI EGFR ANTIBODY FV REGION
Authors:Makabe, K., Tsumoto, K., Asano, R., Kondo, H., Kumagai, I.
Deposit date:2004-11-16
Release date:2005-05-16
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Thermodynamic consequences of mutations in vernier zone residues of a humanized anti-human epidermal growth factor receptor murine antibody, 528
J.Biol.Chem., 283, 2008
3B0O
  • Download 3b0o
  • View 3b0o
Molmil generated image of 3b0o
CRYSTAL STRUCTURE OF ALPHA-LACTALBUMIN
Descriptor:Alpha-lactalbumin, CALCIUM ION
Authors:Makabe, K., Kuwajima, K.
Deposit date:2011-06-10
Release date:2012-06-13
Last modified:2014-01-15
Method:X-RAY DIFFRACTION (1.61 Å)
Cite:Structural insights into the stability perturbations induced by N-terminal variation in human and goat alpha-lactalbumin
Protein Eng.Des.Sel., 26, 2013
3B0I
  • Download 3b0i
  • View 3b0i
Molmil generated image of 3b0i
CRYSTAL STRUCTURE OF RECOMBINANT HUMAN ALPHA LACTALBUMIN
Descriptor:Alpha-lactalbumin, CALCIUM ION, SULFATE ION
Authors:Makabe, K.
Deposit date:2011-06-10
Release date:2012-06-13
Last modified:2014-01-15
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural insights into the stability perturbations induced by N-terminal variation in human and goat alpha-lactalbumin
Protein Eng.Des.Sel., 26, 2013
3B0K
  • Download 3b0k
  • View 3b0k
Molmil generated image of 3b0k
CRYSTAL STRUCTURE OF ALPHA-LACTALBUMIN
Descriptor:Alpha-lactalbumin, CALCIUM ION
Authors:Makabe, K.
Deposit date:2011-06-10
Release date:2012-06-13
Last modified:2014-01-15
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Structural insights into the stability perturbations induced by N-terminal variation in human and goat alpha-lactalbumin
Protein Eng.Des.Sel., 26, 2013
2AF5
  • Download 2af5
  • View 2af5
Molmil generated image of 2af5
2.5A X-RAY STRUCTURE OF ENGINEERED OSPA PROTEIN
Descriptor:Engineered Outer Surface Protein A (OspA) with the inserted two beta-hairpins
Authors:Makabe, K., Mcelheny, D., Tereshko, V., Hilyard, A., Koide, A., Koide, S.
Deposit date:2005-07-25
Release date:2006-08-01
Last modified:2017-08-16
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Atomic structures of peptide self-assembly mimics.
Proc.Natl.Acad.Sci.Usa, 103, 2006
2FKG
  • Download 2fkg
  • View 2fkg
Molmil generated image of 2fkg
THE CRYSTAL STRUCTURE OF ENGINEERED OSPA
Descriptor:Outer Surface Protein A
Authors:Makabe, K., Terechko, V., Gawlak, G., Yan, S., Koide, S.
Deposit date:2006-01-04
Release date:2006-11-21
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Atomic structures of peptide self-assembly mimics.
Proc.Natl.Acad.Sci.Usa, 103, 2006
2FKJ
  • Download 2fkj
  • View 2fkj
Molmil generated image of 2fkj
THE CRYSTAL STRUCTURE OF ENGINEERED OSPA
Descriptor:Outer Surface Protein A
Authors:Makabe, K., Terechko, V., Gawlak, G., Yan, S., Koide, S.
Deposit date:2006-01-04
Release date:2006-11-21
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Atomic structures of peptide self-assembly mimics.
Proc.Natl.Acad.Sci.Usa, 103, 2006
2G8C
  • Download 2g8c
  • View 2g8c
Molmil generated image of 2g8c
ATOMIC-RESOLUTION CRYSTAL STRUCTURE OF BORRELIA BURGDORFERI OSPA VIA SURFACE ENTROPY REDUCTION
Descriptor:outer surface protein A, IMIDAZOLE, TETRAETHYLENE GLYCOL
Authors:Makabe, K., Tereshko, V., Koide, S.
Deposit date:2006-03-02
Release date:2006-08-08
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.15 Å)
Cite:Atomic-resolution crystal structure of Borrelia burgdorferi outer surface protein A via surface engineering.
Protein Sci., 15, 2006
2HKD
  • Download 2hkd
  • View 2hkd
Molmil generated image of 2hkd
THE CRYSTAL STRUCTURE OF ENGINEERED OSPA
Descriptor:Outer Surface Protein A, TETRAETHYLENE GLYCOL
Authors:Makabe, K., Terechko, V., Koide, S.
Deposit date:2006-07-03
Release date:2006-11-21
Last modified:2017-06-28
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Atomic structures of peptide self-assembly mimics.
Proc.Natl.Acad.Sci.Usa, 103, 2006
2I5V
  • Download 2i5v
  • View 2i5v
Molmil generated image of 2i5v
CRYSTAL STRUCTURE OF OSPA MUTANT
Descriptor:Outer surface protein A, TETRAETHYLENE GLYCOL
Authors:Makabe, K., Terechko, V., Koide, S.
Deposit date:2006-08-25
Release date:2007-12-25
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.1 Å)
Cite:High-Resolution Structure of a Self-Assembly-Competent Form of a Hydrophobic Peptide Captured in a Soluble β-Sheet Scaffold.
J.Mol.Biol., 378, 2008
2OL6
  • Download 2ol6
  • View 2ol6
Molmil generated image of 2ol6
THE CRYSTAL STRUCTURE OF OSPA MUTANT
Descriptor:Outer surface protein A
Authors:Makabe, K., Terechko, V., Koide, S.
Deposit date:2007-01-18
Release date:2007-12-11
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:beta-Strand Flipping and Slipping Triggered by Turn Replacement Reveal the Opportunistic Nature of beta-Strand Pairing
J.Am.Chem.Soc., 129, 2007
2OL7
  • Download 2ol7
  • View 2ol7
Molmil generated image of 2ol7
THE CRYSTAL STRUCTURE OF OSPA MUTANT
Descriptor:Outer surface protein A
Authors:Makabe, K., Terechko, V., Koide, S.
Deposit date:2007-01-18
Release date:2007-12-11
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.35 Å)
Cite:beta-Strand Flipping and Slipping Triggered by Turn Replacement Reveal the Opportunistic Nature of beta-Strand Pairing
J.Am.Chem.Soc., 129, 2007
2OL8
  • Download 2ol8
  • View 2ol8
Molmil generated image of 2ol8
THE CRYSTAL STRUCTURE OF OSPA MUTANT
Descriptor:Outer surface protein A
Authors:Makabe, K., Terechko, V., Koide, S.
Deposit date:2007-01-18
Release date:2007-12-11
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:beta-Strand Flipping and Slipping Triggered by Turn Replacement Reveal the Opportunistic Nature of beta-Strand Pairing
J.Am.Chem.Soc., 129, 2007
2OY1
  • Download 2oy1
  • View 2oy1
Molmil generated image of 2oy1
THE CRYSTAL STRUCTURE OF OSPA MUTANT
Descriptor:Outer surface protein A
Authors:Makabe, K., Terechko, V., Koide, S.
Deposit date:2007-02-21
Release date:2007-12-11
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.86 Å)
Cite:beta-Strand Flipping and Slipping Triggered by Turn Replacement Reveal the Opportunistic Nature of beta-Strand Pairing
J.Am.Chem.Soc., 129, 2007
3CKF
  • Download 3ckf
  • View 3ckf
Molmil generated image of 3ckf
THE CRYSTAL STRUCTURE OF OSPA DELETION MUTANT
Descriptor:Outer surface protein A
Authors:Makabe, K., Koide, S.
Deposit date:2008-03-14
Release date:2009-01-27
Last modified:2017-08-16
Method:X-RAY DIFFRACTION (1.25 Å)
Cite:The promiscuity of beta-strand pairing allows for rational design of beta-sheet face inversion
J.Am.Chem.Soc., 130, 2008
3CKG
  • Download 3ckg
  • View 3ckg
Molmil generated image of 3ckg
THE CRYSTAL STRUCTURE OF OSPA DELETION MUTANT
Descriptor:Outer surface protein A, MAGNESIUM ION
Authors:Makabe, K., Koide, S.
Deposit date:2008-03-14
Release date:2009-01-27
Last modified:2017-08-16
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:The promiscuity of beta-strand pairing allows for rational design of beta-sheet face inversion
J.Am.Chem.Soc., 130, 2008
5AYP
  • Download 5ayp
  • View 5ayp
Molmil generated image of 5ayp
CRYSTAL STRUCTURE OF BACILLUS STEAROTHERMOPHILUS FARNESYL PYROPHOSPHATE SYNTHASE
Descriptor:Farnesyl diphosphate synthase
Authors:Makabe, K., Kijima, T.
Deposit date:2015-08-26
Release date:2016-09-14
Method:X-RAY DIFFRACTION (2.31 Å)
Cite:Crystal structure of Bacillus stearothermophilus Farnesyl pyrophosphate synthase
To Be Published
2I5Z
  • Download 2i5z
  • View 2i5z
Molmil generated image of 2i5z
THE CRYSTAL STRUCTURE OF OSPA MUTANT
Descriptor:Outer surface protein A, TETRAETHYLENE GLYCOL
Authors:Makabe, K., Terechko, V., Koide, S.
Deposit date:2006-08-26
Release date:2007-07-10
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.2 Å)
Cite:Hydrophobic surface burial is the major stability determinant of a flat, single-layer beta-sheet.
J.Mol.Biol., 368, 2007
2OY5
  • Download 2oy5
  • View 2oy5
Molmil generated image of 2oy5
THE CRYSTAL STRUCTURE OF OSPA MUTANT
Descriptor:Outer surface protein A
Authors:Makabe, K., Terechko, V., Biancalana, M., Yan, S., Koide, S.
Deposit date:2007-02-21
Release date:2008-03-04
Last modified:2018-05-30
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Aromatic cluster mutations produce focal modulations of beta-sheet structure.
Protein Sci., 24, 2015
2OY7
  • Download 2oy7
  • View 2oy7
Molmil generated image of 2oy7
THE CRYSTAL STRUCTURE OF OSPA MUTANT
Descriptor:Outer surface protein A
Authors:Makabe, K., Terechko, V., Koide, A., Koide, S.
Deposit date:2007-02-21
Release date:2008-03-04
Last modified:2017-08-16
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Aromatic cross-strand ladders control the structure and stability of beta-rich peptide self-assembly mimics
J.Mol.Biol., 383, 2008
2OY8
  • Download 2oy8
  • View 2oy8
Molmil generated image of 2oy8
THE CRYSTAL STRUCTURE OF OSPA MUTANT
Descriptor:Outer surface protein A
Authors:Makabe, K., Terechko, V., Koide, A., Koide, S.
Deposit date:2007-02-21
Release date:2008-03-04
Last modified:2017-08-16
Method:X-RAY DIFFRACTION (2 Å)
Cite:Aromatic cross-strand ladders control the structure and stability of beta-rich peptide self-assembly mimics
J.Mol.Biol., 383, 2008
2OYB
  • Download 2oyb
  • View 2oyb
Molmil generated image of 2oyb
THE CRYSTAL STRUCTURE OF OSPA MUTANT
Descriptor:Outer surface protein A
Authors:Makabe, K., Biancalana, M., Terechko, V., Koide, S.
Deposit date:2007-02-21
Release date:2008-03-04
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Aromatic cross-strand ladders control the structure and stability of beta-rich peptide self-assembly mimics
J.Mol.Biol., 383, 2008
3AUM
  • Download 3aum
  • View 3aum
Molmil generated image of 3aum
CRYSTAL STRUCTURE OF OSPA MUTANT
Descriptor:Outer surface protein A
Authors:Makabe, K.
Deposit date:2011-02-10
Release date:2012-02-15
Last modified:2018-05-30
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Aromatic cluster mutations produce focal modulations of beta-sheet structure.
Protein Sci., 24, 2015
3CH8
  • Download 3ch8
  • View 3ch8
Molmil generated image of 3ch8
THE CRYSTAL STRUCTURE OF PDZ-FIBRONECTIN FUSION PROTEIN
Descriptor:fusion protein PDZ-Fibronectin, C-terminal octapeptide from protein ARVCF, MAGNESIUM ION
Authors:Makabe, K., Huang, J., Koide, A., Koide, S.
Deposit date:2008-03-08
Release date:2009-03-31
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structural basis for exquisite specificity of affinity clamps, synthetic binding proteins generated through directed domain-interface evolution.
J.Mol.Biol., 392, 2009
3CKA
  • Download 3cka
  • View 3cka
Molmil generated image of 3cka
THE CRYSTAL STRUCTURE OF OSPA MUTANT
Descriptor:Outer surface protein A, PENTAETHYLENE GLYCOL
Authors:Makabe, K., Biancalana, M., Terechko, V., Koide, S.
Deposit date:2008-03-14
Release date:2009-03-17
Last modified:2017-06-28
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Minimalist design of water-soluble cross-{beta} architecture.
Proc.Natl.Acad.Sci.USA, 107, 2010
<12>