Author results

1A4T
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SOLUTION STRUCTURE OF PHAGE P22 N PEPTIDE-BOX B RNA COMPLEX, NMR, 20 STRUCTURES
Descriptor:BOXB RNA, 20-MER BASIC PEPTIDE
Authors:Cai, Z., Gorin, A.A., Frederick, R., Ye, X., Hu, W., Majumdar, A., Kettani, A., Patel, D.J.
Deposit date:1998-02-04
Release date:1998-04-29
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution structure of P22 transcriptional antitermination N peptide-boxB RNA complex.
Nat.Struct.Biol., 5, 1998
1EEG
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A(GGGG)A HEXAD PAIRING ALIGMENT FOR THE D(G-G-A-G-G-A-G) SEQUENCE
Descriptor:DNA (5'-D(*GP*GP*AP*GP*GP*A)-3')
Authors:Kettani, A., Gorin, A., Majumdar, A., Hermann, T., Skripkin, E., Zhao, H., Jones, R., Patel, D.J.
Deposit date:2000-01-31
Release date:2000-04-02
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:A dimeric DNA interface stabilized by stacked A.(G.G.G.G).A hexads and coordinated monovalent cations.
J.Mol.Biol., 297, 2000
1EXY
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SOLUTION STRUCTURE OF HTLV-1 PEPTIDE BOUND TO ITS RNA APTAMER TARGET
Descriptor:RNA APTAMER, 33-MER, HTLV-1 REX PEPTIDE
Authors:Jiang, F., Gorin, A., Hu, W., Majumdar, A., Baskerville, S., Xu, W., Ellington, A., Patel, D.J.
Deposit date:2000-05-05
Release date:2000-05-15
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Anchoring an extended HTLV-1 Rex peptide within an RNA major groove containing junctional base triples.
Structure Fold.Des., 7, 1999
1F3S
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SOLUTION STRUCTURE OF DNA SEQUENCE GGGTTCAGG FORMS GGGG TETRADE AND G(C-A) TRIAD.
Descriptor:DNA (5'-D(*GP*GP*GP*TP*TP*CP*AP*GP*G)-3')
Authors:Kettani, A., Basu, G., Gorin, A., Majumdar, A., Skripkin, E., Patel, D.J.
Deposit date:2000-06-06
Release date:2000-11-13
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:A two-stranded template-based approach to G.(C-A) triad formation: designing novel structural elements into an existing DNA framework.
J.Mol.Biol., 301, 2000
1JJP
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A(GGGG) PENTAD-CONTAINING DIMERIC DNA QUADRUPLEX INVOLVING STACKED G(ANTI)G(ANTI)G(ANTI)G(SYN) TETRADS
Descriptor:5'-D(*GP*GP*GP*AP*GP*GP*TP*TP*TP*GP*GP*GP*AP*T)-3'
Authors:Zhang, N., Gorin, A., Majumdar, A., Kettani, A., Chernichenko, N., Skripkin, E., Patel, D.J.
Deposit date:2001-07-09
Release date:2001-09-19
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:V-shaped scaffold: a new architectural motif identified in an A x (G x G x G x G) pentad-containing dimeric DNA quadruplex involving stacked G(anti) x G(anti) x G(anti) x G(syn) tetrads.
J.Mol.Biol., 311, 2001
1JVC
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DIMERIC DNA QUADRUPLEX CONTAINING MAJOR GROOVE-ALIGNED A.T.A.T AND G.C.G.C TETRADS STABILIZED BY INTER-SUBUNIT WATSON-CRICK A:T AND G:C PAIRS
Descriptor:5'-D(*GP*AP*GP*CP*AP*GP*GP*T)-3'
Authors:Zhang, N., Gorin, A., Majumdar, A., Kettani, A., Chernichenko, N., Skripkin, E., Patel, D.J.
Deposit date:2001-08-29
Release date:2001-10-24
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Dimeric DNA quadruplex containing major groove-aligned A-T-A-T and G-C-G-C tetrads stabilized by inter-subunit Watson-Crick A-T and G-C pairs.
J.Mol.Biol., 312, 2001
2LA5
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RNA DUPLEX-QUADRUPLEX JUNCTION COMPLEX WITH FMRP RGG PEPTIDE
Descriptor:RNA (36-MER), Fragile X mental retardation 1 protein
Authors:Phan, A., Kuryavyi, V., Darnell, J., Serganov, A., Majumdar, A., Ilin, S., Darnell, R., Patel, D.
Deposit date:2011-03-03
Release date:2011-06-08
Last modified:2011-07-20
Method:SOLUTION NMR
Cite:Structure-function studies of FMRP RGG peptide recognition of an RNA duplex-quadruplex junction.
Nat.Struct.Mol.Biol., 18, 2011
484D
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SOLUTION STRUCTURE OF HIV-1 REV PEPTIDE-RNA APTAMER COMPLEX
Descriptor:RNA APTAMER, BASIC REV PEPTIDE
Authors:Ye, X., Gorin, A.A., Frederick, R., Hu, W., Majumdar, A., Xu, W., Mclendon, G., Ellington, A., Patel, D.J.
Deposit date:1999-08-02
Release date:1999-10-14
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:RNA architecture dictates the conformations of a bound peptide.
Chem.Biol., 6, 1999
1B3P
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5'-D(*GP*GP*AP*GP*GP*AP*T)-3'
Descriptor:DNA (5'-D(*GP*GP*AP*GP*GP*AP*T)-3')
Authors:Kettani, A., Bouaziz, S., Skripkin, E., Majumdar, A., Wang, W., Jones, R.A., Patel, D.J.
Deposit date:1998-12-14
Release date:1999-08-31
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Interlocked mismatch-aligned arrowhead DNA motifs.
Structure Fold.Des., 7, 1999
1I34
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SOLUTION DNA QUADRUPLEX WITH DOUBLE CHAIN REVERSAL LOOP AND TWO DIAGONAL LOOPS CONNECTING GGGG TETRADS FLANKED BY G-(T-T) TRIAD AND T-T-T TRIPLE
Descriptor:5'-D(*GP*GP*TP*TP*TP*TP*GP*GP*CP*AP*GP*GP*GP*TP*TP*TP*TP*GP*GP*T)-3'
Authors:Kuryavyi, V., Majumdar, A., Shallop, A., Chernichenko, N., Skripkin, E., Jones, R., Patel, D.J.
Deposit date:2001-02-12
Release date:2001-06-27
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:A double chain reversal loop and two diagonal loops define the architecture of a unimolecular DNA quadruplex containing a pair of stacked G(syn)-G(syn)-G(anti)-G(anti) tetrads flanked by a G-(T-T) Triad and a T-T-T triple.
J.Mol.Biol., 310, 2001
1CEE
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SOLUTION STRUCTURE OF CDC42 IN COMPLEX WITH THE GTPASE BINDING DOMAIN OF WASP
Descriptor:GTP-BINDING RHO-LIKE PROTEIN, WISKOTT-ALDRICH SYNDROME PROTEIN WASP, MAGNESIUM ION, ...
Authors:Abdul-Manan, N., Aghazadeh, B., Liu, G.A., Majumdar, A., Ouerfelli, O., Rosen, M.K.
Deposit date:1999-03-08
Release date:1999-06-30
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Structure of Cdc42 in complex with the GTPase-binding domain of the 'Wiskott-Aldrich syndrome' protein.
Nature, 399, 1999
1G70
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COMPLEX OF HIV-1 RRE-IIB RNA WITH RSG-1.2 PEPTIDE
Descriptor:HIV-1 RRE-IIB 32 NUCLEOTIDE RNA, RSG-1.2 PEPTIDE
Authors:Gosser, Y., Hermann, T., Majumdar, A., Hu, W., Frederick, R., Jiang, F., Xu, W., Patel, D.J.
Deposit date:2000-11-08
Release date:2001-02-07
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Peptide-triggered conformational switch in HIV-1 RRE RNA complexes.
Nat.Struct.Biol., 8, 2001
1NEM
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SACCHARIDE-RNA RECOGNITION IN THE NEOMYCIN B / RNA APTAMER COMPLEX
Descriptor:5'-R(*GP*GP*AP*CP*UP*GP*GP*GP*CP*GP*AP*GP*AP*AP*GP*UP*UP*UP*AP*GP*UP*CP*C)-3', BETA-D-RIBOFURANOSYL, O-2,6-DIAMINO-2,6-DIDEOXY-BETA-L-IDOPYRANOSE, ...
Authors:Jiang, L., Majumdar, A., Hu, W., Jaishree, T.J., Xu, W., Patel, D.J.
Deposit date:1999-03-15
Release date:1999-08-31
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Saccharide-RNA recognition in a complex formed between neomycin B and an RNA aptamer
Structure Fold.Des., 7, 1999
2KLY
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SOLUTION STRUCTURE OF HUMAN UBIQUITIN CONJUGATING ENZYME UBE2G2
Descriptor:Ubiquitin-conjugating enzyme E2 G2
Authors:Ju, T., Bocik, W., Majumdar, A., Tolman, J.R.
Deposit date:2009-07-10
Release date:2010-03-02
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution structure and dynamics of human ubiquitin conjugating enzyme Ube2g2.
Proteins, 78, 2010
2L6B
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NRC CONSENSUS ANKYRIN REPEAT PROTEIN SOLUTION STRUCTURE
Descriptor:NR1C
Authors:Aksel, T., Majumdar, A., Barrick, D.
Deposit date:2010-11-17
Release date:2011-03-23
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:The contribution of entropy, enthalpy, and hydrophobic desolvation to cooperativity in repeat-protein folding.
Structure, 19, 2011
3LX0
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CRYSTAL STRUCTURE OF STAPHYLOCOCCAL NUCLEASE VARIANT DELTA+PHS D21N AT CRYOGENIC TEMPERATURE
Descriptor:Thermonuclease, THYMIDINE-3',5'-DIPHOSPHATE, PHOSPHATE ION
Authors:Doctrow, B.M., Schlessman, J.L., Garcia-Moreno, E.B., Heroux, A.
Deposit date:2010-02-24
Release date:2011-02-16
Last modified:2017-11-08
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Cooperative Proton Binding in a Cluster of Carboxylic Residues
To be Published
3T16
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CRYSTAL STRUCTURE OF STAPHYLOCOCCAL NUCLEASE VARIANT NVIAGA/M98G AT CRYOGENIC TEMPERATURE
Descriptor:Thermonuclease
Authors:Schlessman, J.L., Doctrow, B.M., Garcia-Moreno E., B., Heroux, A.
Deposit date:2011-07-21
Release date:2011-08-03
Last modified:2017-11-08
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structure of Staphylococcal nuclease variant NVIAGA/M98G at cryogenic temperature
To be Published
3TME
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CRYSTAL STRUCTURE OF STAPHYLOCOCCAL NUCLEASE VARIANT DELTA+NVIAGLA V23E AT CRYOGENIC TEMPERATURE
Descriptor:Thermonuclease, THYMIDINE-3',5'-DIPHOSPHATE, (4R)-2-METHYLPENTANE-2,4-DIOL
Authors:Robinson, A.C., Schlessman, J.L., Heroux, A., Garcia-Moreno E., B.
Deposit date:2011-08-31
Release date:2011-09-14
Last modified:2013-03-06
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Crystal structure of Staphylococcal nuclease variant Delta+NVIAGLA V23E at cryogenic temperature
To be Published
4EVO
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CRYSTAL STRUCTURE OF STAPHYLOCOCCAL NUCLEASE VARIANT NVIAGA/E122G AT CRYOGENIC TEMPERATURE
Descriptor:Thermonuclease, PHOSPHATE ION
Authors:Doctrow, B.M., Schlessman, J.L., Garcia-Moreno E., B., Heroux, A.
Deposit date:2012-04-26
Release date:2012-05-23
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Local flexibility as a determinant of pKa values of surface ionizable groups in proteins
To be Published
3BDC
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CRYSTAL STRUCTURE OF STAPHYLOCOCCAL NUCLEASE VARIANT DELTA+PHS AT CRYOGENIC TEMPERATURE
Descriptor:Thermonuclease, CALCIUM ION, THYMIDINE-3',5'-DIPHOSPHATE
Authors:Khangulov, V., Schlessman, J.L., Garcia-Moreno, B.E.
Deposit date:2007-11-14
Release date:2008-11-04
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Molecular determinants of the pK(a) values of Asp and Glu residues in staphylococcal nuclease.
Proteins, 77, 2009
3EJI
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CRYSTAL STRUCTURE OF STAPHYLOCOCCAL NUCLEASE VARIANT DELTA+PHS L36K AT CRYOGENIC TEMPERATURE
Descriptor:Thermonuclease, PHOSPHATE ION, (4S)-2-METHYL-2,4-PENTANEDIOL
Authors:Khangulov, V.S., Schlessman, J.L., Garcia-Moreno, E.B., Benning, M., Isom, D.
Deposit date:2008-09-18
Release date:2008-11-04
Last modified:2017-10-25
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structural Consequences of the Ionization of Lysines at 25 Internal Positions in a Protein
To be Published
3U9O
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CRYSTAL STRUCTURE OF STAPHYLOCOCCAL NUCLEASE VARIANT NVIAGA/N100G AT CRYOGENIC TEMPERATURE
Descriptor:Thermonuclease, PHOSPHATE ION
Authors:Schlessman, J.L., Doctrow, B.M., Garcia-Moreno E., B.
Deposit date:2011-10-19
Release date:2011-11-23
Last modified:2017-11-08
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Local flexibility as a determinant of pKa values of surface ionizable groups in proteins
To be Published
4E6I
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CRYSTAL STRUCTURE OF STAPHYLOCOCCAL NUCLEASE VARIANT NVIAGA V99G AT CRYOGENIC TEMPERATURE
Descriptor:Thermonuclease, PHOSPHATE ION, (4S)-2-METHYL-2,4-PENTANEDIOL
Authors:Doctrow, B.M., Schlessman, J.L., Garcia-Moreno E., B.
Deposit date:2012-03-15
Release date:2012-04-18
Last modified:2017-11-15
Method:X-RAY DIFFRACTION (2 Å)
Cite:Local flexibility as a determinant of pKa values of surface ionizable groups in proteins
To be Published
4R62
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STRUCTURE OF RAD6~UB
Descriptor:Ubiquitin-conjugating enzyme E2 2, Ubiquitin-40S ribosomal protein S27a, ACETATE ION
Authors:Kumar, P., Wolberger, C.
Deposit date:2014-08-22
Release date:2015-09-02
Last modified:2015-10-28
Method:X-RAY DIFFRACTION (2.28 Å)
Cite:Role of a non-canonical surface of Rad6 in ubiquitin conjugating activity.
Nucleic Acids Res., 43, 2015
2KSC
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SOLUTION STRUCTURE OF SYNECHOCOCCUS SP. PCC 7002 HEMOGLOBIN
Descriptor:Cyanoglobin, HEME B/C
Authors:Vuletich, D.A., Falzone, C.J., Lecomte, J.T.J.
Deposit date:2010-01-02
Release date:2010-02-09
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Functional and structural characterization of the 2/2 hemoglobin from Synechococcus sp. PCC 7002.
Biochemistry, 49, 2010