Author results

3C9V
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C7 SYMMETRIZED STRUCTURE OF UNLIGANDED GROEL AT 4.7 ANGSTROM RESOLUTION FROM CRYOEM
Descriptor:60 kDa chaperonin
Authors:Ludtke, S.J., Baker, M.L., Chen, D.H., Song, J.L., Chuang, D., Chiu, W.
Deposit date:2008-02-18
Release date:2008-09-02
Last modified:2015-07-01
Method:ELECTRON MICROSCOPY (4.7 Å)
Cite:De Novo Backbone Trace of GroEL from Single Particle Electron Cryomicroscopy.
Structure, 16, 2008
3CAU
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D7 SYMMETRIZED STRUCTURE OF UNLIGANDED GROEL AT 4.2 ANGSTROM RESOLUTION BY CRYOEM
Descriptor:60 kDa chaperonin
Authors:Ludtke, S.J., Baker, M.L., Chen, D.H., Song, J.L., Chuang, D., Chiu, W.
Deposit date:2008-02-20
Release date:2008-09-02
Last modified:2015-07-01
Method:ELECTRON MICROSCOPY (4.2 Å)
Cite:De Novo Backbone Trace of GroEL from Single Particle Electron Cryomicroscopy.
Structure, 16, 2008
3KTT
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ATOMIC MODEL OF BOVINE TRIC CCT2(BETA) SUBUNIT DERIVED FROM A 4.0 ANGSTROM CRYO-EM MAP
Descriptor:T-complex protein 1 subunit beta
Authors:Cong, Y., Baker, M.L., Ludtke, S.J., Frydman, J., Chiu, W.
Deposit date:2009-11-25
Release date:2010-03-16
Last modified:2018-07-18
Method:ELECTRON MICROSCOPY (4 Å)
Cite:4.0-A resolution cryo-EM structure of the mammalian chaperonin TRiC/CCT reveals its unique subunit arrangement.
Proc.Natl.Acad.Sci.USA, 107, 2010
1TT9
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STRUCTURE OF THE BIFUNCTIONAL AND GOLGI ASSOCIATED FORMIMINOTRANSFERASE CYCLODEAMINASE OCTAMER
Descriptor:Formimidoyltransferase-cyclodeaminase (Formiminotransferase- cyclodeaminase) (FTCD) (58 kDa microtubule-binding protein)
Authors:Mao, Y., Vyas, N.K., Vyas, M.N., Chen, D.H., Ludtke, S.J., Chiu, W., Quiocho, F.A.
Deposit date:2004-06-22
Release date:2005-06-28
Last modified:2017-10-11
Method:X-RAY DIFFRACTION (3.42 Å)
Cite:Structure of the bifunctional and Golgi-associated formiminotransferase cyclodeaminase octamer
Embo J., 23, 2004
3IYF
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ATOMIC MODEL OF THE LIDLESS MM-CPN IN THE OPEN STATE
Descriptor:Chaperonin
Authors:Zhang, J., Baker, M.L., Schroeder, G., Douglas, N.R., Reissmann, S., Jakana, J., Dougherty, M., Fu, C.J., Levitt, M., Ludtke, S.J., Frydman, J., Chiu, W.
Deposit date:2009-10-23
Release date:2010-02-02
Last modified:2018-07-18
Method:ELECTRON MICROSCOPY (8 Å)
Cite:Mechanism of folding chamber closure in a group II chaperonin
Nature, 463, 2010
3IYG
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CA MODEL OF BOVINE TRIC/CCT DERIVED FROM A 4.0 ANGSTROM CRYO-EM MAP
Descriptor:T-complex protein 1 subunit theta, T-complex protein 1 subunit gamma, T-complex protein 1 subunit zeta, ...
Authors:Cong, Y., Baker, M.L., Ludtke, S.J., Frydman, J., Chiu, W.
Deposit date:2009-11-28
Release date:2010-03-16
Last modified:2018-07-18
Method:ELECTRON MICROSCOPY (4 Å)
Cite:4.0-A resolution cryo-EM structure of the mammalian chaperonin TRiC/CCT reveals its unique subunit arrangement.
Proc.Natl.Acad.Sci.USA, 107, 2010
3J45
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STRUCTURE OF A NON-TRANSLOCATING SECY PROTEIN CHANNEL WITH THE 70S RIBOSOME
Descriptor:Protein translocase subunit SecY, Preprotein translocase subunit SecE, Protein-export membrane protein SecG, ...
Authors:Menetret, J.F., Park, E., Gumbart, J.C., Ludtke, S.J., Li, W., Whynot, A., Rapoport, T.A., Akey, C.W.
Deposit date:2013-06-18
Release date:2013-10-23
Last modified:2018-07-18
Method:ELECTRON MICROSCOPY (9.5 Å)
Cite:Structure of the SecY channel during initiation of protein translocation.
Nature, 506, 2013
3J46
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STRUCTURE OF THE SECY PROTEIN TRANSLOCATION CHANNEL IN ACTION
Descriptor:Protein translocase subunit SecY, Preprotein translocase subunit SecE, Protein-export membrane protein SecG, ...
Authors:Akey, C.W., Park, E., Menetret, J.F., Gumbart, J.C., Ludtke, S.J., Li, W., Whynot, A., Rapoport, T.A.
Deposit date:2013-06-18
Release date:2013-10-23
Last modified:2018-07-18
Method:ELECTRON MICROSCOPY (10.1 Å)
Cite:Structure of the SecY channel during initiation of protein translocation.
Nature, 506, 2013
3J7L
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FULL VIRUS MAP OF BROME MOSAIC VIRUS
Descriptor:Capsid protein
Authors:Wang, Z., Hryc, C., Bammes, B., Afonine, P.V., Jakana, J., Chen, D.H., Liu, X., Baker, M.L., Kao, C., Ludtke, S.J., Schmid, M.F., Adams, P.D., Chiu, W.
Deposit date:2014-07-18
Release date:2014-09-10
Last modified:2018-07-18
Method:ELECTRON MICROSCOPY (3.8 Å)
Cite:An atomic model of brome mosaic virus using direct electron detection and real-space optimization.
Nat Commun, 5, 2014
3J7M
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VIRUS MODEL OF BROME MOSAIC VIRUS (FIRST HALF DATA SET)
Descriptor:Capsid protein
Authors:Wang, Z., Hryc, C., Bammes, B., Afonine, P.V., Jakana, J., Chen, D.H., Liu, X., Baker, M.L., Kao, C., Ludtke, S.J., Schmid, M.F., Adams, P.D., Chiu, W.
Deposit date:2014-07-18
Release date:2014-09-10
Last modified:2018-07-18
Method:ELECTRON MICROSCOPY (3.8 Å)
Cite:An atomic model of brome mosaic virus using direct electron detection and real-space optimization.
Nat Commun, 5, 2014
3J7N
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VIRUS MODEL OF BROME MOSAIC VIRUS (SECOND HALF DATA SET)
Descriptor:Capsid protein
Authors:Wang, Z., Hryc, C., Bammes, B., Afonine, P.V., Jakana, J., Chen, D.H., Liu, X., Baker, M.L., Kao, C., Ludtke, S.J., Schmid, M.F., Adams, P.D., Chiu, W.
Deposit date:2014-07-18
Release date:2014-09-10
Last modified:2018-07-18
Method:ELECTRON MICROSCOPY (3.8 Å)
Cite:An atomic model of brome mosaic virus using direct electron detection and real-space optimization.
Nat Commun, 5, 2014
3JAV
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STRUCTURE OF FULL-LENGTH IP3R1 CHANNEL IN THE APO-STATE DETERMINED BY SINGLE PARTICLE CRYO-EM
Descriptor:Inositol 1,4,5-trisphosphate receptor type 1
Authors:Fan, G., Baker, M.L., Wang, Z., Baker, M.R., Sinyagovskiy, P.A., Chiu, W., Ludtke, S.J., Serysheva, I.I.
Deposit date:2015-06-30
Release date:2015-10-07
Last modified:2018-07-18
Method:ELECTRON MICROSCOPY (4.7 Å)
Cite:Gating machinery of InsP3R channels revealed by electron cryomicroscopy.
Nature, 527, 2015
3LOS
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ATOMIC MODEL OF MM-CPN IN THE CLOSED STATE
Descriptor:Chaperonin
Authors:Zhang, J., Baker, M.L., Schroeder, G., Douglas, N.R., Reissmann, S., Jakana, J., Dougherty, M., Fu, C.J., Levitt, M., Ludtke, S.J., Frydman, J., Chiu, W.
Deposit date:2010-02-04
Release date:2010-03-16
Last modified:2018-07-18
Method:ELECTRON MICROSCOPY (4.3 Å)
Cite:Mechanism of folding chamber closure in a group II chaperonin
Nature, 463, 2010
4V4L
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STRUCTURE OF THE DROSOPHILA APOPTOSOME
Descriptor:Apaf-1 related killer DARK, MAGNESIUM ION, 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE
Authors:Yuan, S., Topf, M., Akey, C.W., Ludtke, S.J.
Deposit date:2010-10-04
Release date:2014-07-09
Last modified:2018-07-18
Method:ELECTRON MICROSCOPY (6.9 Å)
Cite:Structure of the Drosophila apoptosome at 6.9 angstrom resolution
Structure, 19, 2011
4V4N
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STRUCTURE OF THE METHANOCOCCUS JANNASCHII RIBOSOME-SECYEBETA CHANNEL COMPLEX
Descriptor:Preprotein translocase subunit SecE, Preprotein translocase subunit SecG, 50S ribosomal protein L39E, ...
Authors:Menetret, J.F., Park, E., Gumbart, J.C., Ludtke, S.J., Li, W., Whynot, A., Rapoport, T.A., Akey, C.W.
Deposit date:2013-06-17
Release date:2014-07-09
Last modified:2018-07-18
Method:ELECTRON MICROSCOPY (9 Å)
Cite:Structure of the SecY channel during initiation of protein translocation.
Nature, 506, 2013
5JUL
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NEAR ATOMIC STRUCTURE OF THE DARK APOPTOSOME
Descriptor:Apaf-1 related killer DARK, 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE
Authors:Cheng, T.C., Akey, I.V., Yuan, S., Yu, Z., Ludtke, S.J., Akey, C.W.
Deposit date:2016-05-10
Release date:2017-02-22
Last modified:2018-07-18
Method:ELECTRON MICROSCOPY (4.4 Å)
Cite:A Near-Atomic Structure of the Dark Apoptosome Provides Insight into Assembly and Activation.
Structure, 25, 2017
6MU1
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STRUCTURE OF FULL-LENGTH IP3R1 CHANNEL BOUND WITH ADENOPHOSTIN A
Descriptor:Inositol 1,4,5-trisphosphate receptor type 1, Adenophostin A
Authors:Serysheva, I.I., Fan, G., Baker, M.R., Wang, Z., Seryshev, A., Ludtke, S.J., Baker, M.L.
Deposit date:2018-10-22
Release date:2018-12-05
Last modified:2018-12-12
Method:ELECTRON MICROSCOPY (4.1 Å)
Cite:Cryo-EM reveals ligand induced allostery underlying InsP3R channel gating.
Cell Res., 28, 2018
6MU2
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STRUCTURE OF FULL-LENGTH IP3R1 CHANNEL IN THE APO-STATE
Descriptor:Inositol 1,4,5-trisphosphate receptor type 1
Authors:Serysheva, I.I., Fan, G., Baker, M.R., Wang, Z., Seryshev, A., Ludtke, S.J., Baker, M.L.
Deposit date:2018-10-22
Release date:2018-12-05
Last modified:2018-12-12
Method:ELECTRON MICROSCOPY (3.9 Å)
Cite:Cryo-EM reveals ligand induced allostery underlying InsP3R channel gating.
Cell Res., 28, 2018
3IXV
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SCORPION HEMOCYANIN RESTING STATE PSEUDO ATOMIC MODEL BUILT BASED ON CRYO-EM DENSITY MAP
Descriptor:Hemocyanin AA6 chain
Authors:Cong, Y., Zhang, Q., Woolford, D., Schweikardt, T., Khant, H., Ludtke, S., Chiu, W., Decker, H.
Deposit date:2009-02-13
Release date:2009-06-02
Last modified:2018-07-18
Method:ELECTRON MICROSCOPY (6.8 Å)
Cite:Structural Mechanism of SDS-Induced Enzyme Activity of Scorpion Hemocyanin Revealed by Electron Cryomicroscopy.
Structure, 17, 2009
3IXW
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SCORPION HEMOCYANIN ACTIVATED STATE PSEUDO ATOMIC MODEL BUILT BASED ON CRYO-EM DENSITY MAP
Descriptor:Hemocyanin AA6 chain
Authors:Cong, Y., Zhang, Q., Woolford, D., Schweikardt, T., Khant, H., Ludtke, S., Chiu, W., Decker, H.
Deposit date:2009-02-13
Release date:2009-06-02
Last modified:2018-07-18
Method:ELECTRON MICROSCOPY (8 Å)
Cite:Structural Mechanism of SDS-Induced Enzyme Activity of Scorpion Hemocyanin Revealed by Electron Cryomicroscopy.
Structure, 17, 2009
3J32
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AN ASYMMETRIC UNIT MAP FROM ELECTRON CRYO-MICROSCOPY OF HALIOTIS DIVERSICOLOR MOLLUSCAN HEMOCYANIN ISOFORM 1 (HDH1)
Descriptor:Hemocyanin isoform 1
Authors:Zhang, Q., Dai, X., Cong, Y., Zhang, J., Chen, D.-H., Dougherty, M., Wang, J., Ludtke, S., Schmid, M.F., Chiu, W.
Deposit date:2013-02-20
Release date:2013-04-17
Last modified:2018-07-18
Method:ELECTRON MICROSCOPY (4.5 Å)
Cite:Cryo-EM structure of a molluscan hemocyanin suggests its allosteric mechanism.
Structure, 21, 2013
3BO0
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RIBOSOME-SECY COMPLEX
Descriptor:23S RIBOSOMAL RNA, PREPROTEIN TRANSLOCASE SecY SUBUNIT, PREPROTEIN TRANSLOCASE SecE SUBUNIT, ...
Authors:Akey, C.W., Menetret, J.F.
Deposit date:2007-12-15
Release date:2008-12-09
Last modified:2011-07-13
Method:ELECTRON MICROSCOPY (9.6 Å)
Cite:Ribosome binding of a single copy of the SecY complex: implications for protein translocation
Mol.Cell, 28, 2007
3BO1
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RIBOSOME-SECY COMPLEX
Descriptor:23S RIBOSOMAL RNA, PREPROTEIN TRANSLOCASE SecY SUBUNIT, PREPROTEIN TRANSLOCASE SecE SUBUNIT, ...
Authors:Akey, C.W., Menetret, J.F.
Deposit date:2007-12-15
Release date:2008-12-09
Last modified:2011-07-13
Method:ELECTRON MICROSCOPY (9.6 Å)
Cite:Ribosome binding of a single copy of the SecY complex: implications for protein translocation
Mol.Cell, 28, 2007
6BG9
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HYBRID NMR/CRYO-EM STRUCTURE OF THE HIV-1 RNA DIMERIZATION SIGNAL
Descriptor:RNA dimerization signal
Authors:Summers, M.F.
Deposit date:2017-10-27
Release date:2018-02-21
Last modified:2018-03-21
Method:ELECTRON MICROSCOPY (9 Å), SOLUTION NMR
Cite:Structure of the 30 kDa HIV-1 RNA Dimerization Signal by a Hybrid Cryo-EM, NMR, and Molecular Dynamics Approach.
Structure, 26, 2018
2PFD
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ANISOTROPICALLY REFINED STRUCTURE OF FTCD
Descriptor:Formimidoyltransferase-cyclodeaminase
Authors:Poon, B.K., Chen, X., Lu, M., Quiocho, F.A., Wang, Q., Ma, J.
Deposit date:2007-04-04
Release date:2007-04-24
Last modified:2011-08-10
Method:X-RAY DIFFRACTION (3.42 Å)
Cite:Anisotropically refined structure of FTCD
To be Published
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