Author results

4FE1
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IMPROVING THE ACCURACY OF MACROMOLECULAR STRUCTURE REFINEMENT AT 7 A RESOLUTION
Descriptor:Photosystem I P700 chlorophyll a apoprotein A1, Photosystem I P700 chlorophyll a apoprotein A2, Photosystem I iron-sulfur center, ...
Authors:Fromme, R., Adams, P.D., Fromme, P., Levitt, M., Schroeder, G.F., Brunger, A.T.
Deposit date:2012-05-29
Release date:2012-08-15
Last modified:2012-08-29
Method:X-RAY DIFFRACTION (4.9228 Å)
Cite:Improving the accuracy of macromolecular structure refinement at 7 A resolution.
Structure, 20, 2012
3J03
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LIDLESS MM-CPN IN THE CLOSED STATE WITH ATP/ALFX
Descriptor:Lidless Mm-cpn
Authors:Zhang, J., Ma, B., DiMaio, F., Douglas, N.R., Joachimiak, L., Baker, D., Frydman, J., Levitt, M., Chiu, W.
Deposit date:2011-02-10
Release date:2011-05-18
Last modified:2018-07-18
Method:ELECTRON MICROSCOPY (4.8 Å)
Cite:Cryo-EM structure of a group II chaperonin in the prehydrolysis ATP-bound state leading to lid closure.
Structure, 19, 2011
3IYF
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ATOMIC MODEL OF THE LIDLESS MM-CPN IN THE OPEN STATE
Descriptor:Chaperonin
Authors:Zhang, J., Baker, M.L., Schroeder, G., Douglas, N.R., Reissmann, S., Jakana, J., Dougherty, M., Fu, C.J., Levitt, M., Ludtke, S.J., Frydman, J., Chiu, W.
Deposit date:2009-10-23
Release date:2010-02-02
Last modified:2018-07-18
Method:ELECTRON MICROSCOPY (8 Å)
Cite:Mechanism of folding chamber closure in a group II chaperonin
Nature, 463, 2010
3LOS
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ATOMIC MODEL OF MM-CPN IN THE CLOSED STATE
Descriptor:Chaperonin
Authors:Zhang, J., Baker, M.L., Schroeder, G., Douglas, N.R., Reissmann, S., Jakana, J., Dougherty, M., Fu, C.J., Levitt, M., Ludtke, S.J., Frydman, J., Chiu, W.
Deposit date:2010-02-04
Release date:2010-03-16
Last modified:2018-07-18
Method:ELECTRON MICROSCOPY (4.3 Å)
Cite:Mechanism of folding chamber closure in a group II chaperonin
Nature, 463, 2010
4B2T
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THE CRYSTAL STRUCTURES OF THE EUKARYOTIC CHAPERONIN CCT REVEAL ITS FUNCTIONAL PARTITIONING
Descriptor:T-COMPLEX PROTEIN 1 SUBUNIT ALPHA, T-COMPLEX PROTEIN 1 SUBUNIT BETA, T-COMPLEX PROTEIN 1 SUBUNIT DELTA, ...
Authors:Kalisman, N., Schroeder, G.F., Levitt, M.
Deposit date:2012-07-17
Release date:2013-03-20
Last modified:2013-06-05
Method:X-RAY DIFFRACTION (5.5 Å)
Cite:The Crystal Structures of the Eukaryotic Chaperonin Cct Reveal its Functional Partitioning
Structure, 21, 2013
3GTG
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BACKTRACKED RNA POLYMERASE II COMPLEX WITH 12MER RNA
Descriptor:DNA-directed RNA polymerase II subunit RPB1, DNA-directed RNA polymerase II subunit RPB2, DNA-directed RNA polymerase II subunit RPB3, ...
Authors:Wang, D., Bushnell, D.A., Huang, X., Westover, K.D., Levitt, M., Kornberg, R.D.
Deposit date:2009-03-27
Release date:2009-06-09
Last modified:2017-11-01
Method:X-RAY DIFFRACTION (3.78 Å)
Cite:Structural basis of transcription: backtracked RNA polymerase II at 3.4 angstrom resolution.
Science, 324, 2009
3GTJ
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BACKTRACKED RNA POLYMERASE II COMPLEX WITH 13MER RNA
Descriptor:DNA-directed RNA polymerase II subunit RPB1, DNA-directed RNA polymerase II subunit RPB2, DNA-directed RNA polymerase II subunit RPB3, ...
Authors:Wang, D., Bushnell, D.A., Huang, X., Westover, K.D., Levitt, M., Kornberg, R.D.
Deposit date:2009-03-27
Release date:2009-06-09
Last modified:2017-11-01
Method:X-RAY DIFFRACTION (3.42 Å)
Cite:Structural basis of transcription: backtracked RNA polymerase II at 3.4 angstrom resolution.
Science, 324, 2009
3GTK
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BACKTRACKED RNA POLYMERASE II COMPLEX WITH 18MER RNA
Descriptor:DNA-directed RNA polymerase II subunit RPB1, DNA-directed RNA polymerase II subunit RPB2, DNA-directed RNA polymerase II subunit RPB3, ...
Authors:Wang, D., Bushnell, D.A., Huang, X., Westover, K.D., Levitt, M., Kornberg, R.D.
Deposit date:2009-03-27
Release date:2009-06-09
Last modified:2017-11-01
Method:X-RAY DIFFRACTION (3.8 Å)
Cite:Structural basis of transcription: backtracked RNA polymerase II at 3.4 angstrom resolution.
Science, 324, 2009
3GTL
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BACKTRACKED RNA POLYMERASE II COMPLEX WITH 13MER WITH G<>U MISMATCH
Descriptor:DNA-directed RNA polymerase II subunit RPB1, DNA-directed RNA polymerase II subunit RPB2, DNA-directed RNA polymerase II subunit RPB3, ...
Authors:Wang, D., Bushnell, D.A., Huang, X., Westover, K.D., Levitt, M., Kornberg, R.D.
Deposit date:2009-03-27
Release date:2009-06-09
Last modified:2017-11-01
Method:X-RAY DIFFRACTION (3.38 Å)
Cite:Structural basis of transcription: backtracked RNA polymerase II at 3.4 angstrom resolution.
Science, 324, 2009
3GTM
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CO-COMPLEX OF BACKTRACKED RNA POLYMERASE II WITH TFIIS
Descriptor:DNA-directed RNA polymerase II subunit RPB1, DNA-directed RNA polymerase II subunit RPB2, DNA-directed RNA polymerase II subunit RPB3, ...
Authors:Wang, D., Bushnell, D.A., Huang, X., Westover, K.D., Levitt, M., Kornberg, R.D.
Deposit date:2009-03-27
Release date:2009-06-09
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (3.8 Å)
Cite:Structural basis of transcription: backtracked RNA polymerase II at 3.4 angstrom resolution.
Science, 324, 2009
3GTO
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BACKTRACKED RNA POLYMERASE II COMPLEX WITH 15MER RNA
Descriptor:DNA-directed RNA polymerase II subunit RPB1, DNA-directed RNA polymerase II subunit RPB2, DNA-directed RNA polymerase II subunit RPB3, ...
Authors:Wang, D., Bushnell, D.A., Huang, X., Westover, K.D., Levitt, M., Kornberg, R.D.
Deposit date:2009-03-27
Release date:2009-06-09
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (4 Å)
Cite:Structural basis of transcription: backtracked RNA polymerase II at 3.4 angstrom resolution.
Science, 324, 2009
3GTP
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BACKTRACKED RNA POLYMERASE II COMPLEX WITH 24MER RNA
Descriptor:DNA-directed RNA polymerase II subunit RPB1, DNA-directed RNA polymerase II subunit RPB2, DNA-directed RNA polymerase II subunit RPB3, ...
Authors:Wang, D., Bushnell, D.A., Huang, X., Westover, K.D., Levitt, M., Kornberg, R.D.
Deposit date:2009-03-27
Release date:2009-06-09
Last modified:2017-11-01
Method:X-RAY DIFFRACTION (3.9 Å)
Cite:Structural basis of transcription: backtracked RNA polymerase II at 3.4 angstrom resolution.
Science, 324, 2009
3GTQ
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BACKTRACKED RNA POLYMERASE II COMPLEX INDUCED BY DAMAGE
Descriptor:DNA-directed RNA polymerase II subunit RPB1, DNA-directed RNA polymerase II subunit RPB2, DNA-directed RNA polymerase II subunit RPB3, ...
Authors:Wang, D., Bushnell, D.A., Huang, X., Westover, K.D., Levitt, M., Kornberg, R.D.
Deposit date:2009-03-27
Release date:2009-06-09
Last modified:2017-11-01
Method:X-RAY DIFFRACTION (3.8 Å)
Cite:Structural basis of transcription: backtracked RNA polymerase II at 3.4 angstrom resolution.
Science, 324, 2009
3J02
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LIDLESS D386A MM-CPN IN THE PRE-HYDROLYSIS ATP-BOUND STATE
Descriptor:Lidless D386A Mm-cpn variant
Authors:Zhang, J., Ma, B., DiMaio, F., Douglas, N.R., Joachimiak, L., Baker, D., Frydman, J., Levitt, M., Chiu, W.
Deposit date:2011-02-10
Release date:2011-05-18
Last modified:2018-07-18
Method:ELECTRON MICROSCOPY (8 Å)
Cite:Cryo-EM structure of a group II chaperonin in the prehydrolysis ATP-bound state leading to lid closure.
Structure, 19, 2011
3TX8
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CRYSTAL STRUCTURE OF A SUCCINYL-DIAMINOPIMELATE DESUCCINYLASE (ARGE) FROM CORYNEBACTERIUM GLUTAMICUM ATCC 13032 AT 2.97 A RESOLUTION
Descriptor:Succinyl-diaminopimelate desuccinylase, PHOSPHATE ION, CHLORIDE ION
Authors:Joint Center for Structural Genomics (JCSG), Brunger, A.T., Terwilliger, T.C., Read, R.J., Adams, P.D., Levitt, M., Schroder, G.F.
Deposit date:2011-09-22
Release date:2011-10-26
Last modified:2017-11-08
Method:X-RAY DIFFRACTION (2.972 Å)
Cite:Application of DEN refinement and automated model building to a difficult case of molecular-replacement phasing: the structure of a putative succinyl-diaminopimelate desuccinylase from Corynebacterium glutamicum.
Acta Crystallogr.,Sect.D, 68, 2012
4A0O
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SYMMETRY-FREE CRYO-EM MAP OF TRIC IN THE NUCLEOTIDE-FREE (APO) STATE
Descriptor:T-COMPLEX PROTEIN 1 SUBUNIT BETA
Authors:Cong, Y., Schroder, G.F., Meyer, A.S., Jakana, J., Ma, B., Dougherty, M.T., Schmid, M.F., Reissmann, S., Levitt, M., Ludtke, S.L., Frydman, J., Chiu, W.
Deposit date:2011-09-10
Release date:2012-02-15
Last modified:2017-04-19
Method:ELECTRON MICROSCOPY (10.5 Å)
Cite:Symmetry-Free Cryo-Em Structures of the Chaperonin Tric Along its ATPase-Driven Conformational Cycle.
Embo J., 31, 2012
4A0V
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MODEL REFINED AGAINST THE SYMMETRY-FREE CRYO-EM MAP OF TRIC-AMP-PNP
Descriptor:T-COMPLEX PROTEIN 1 SUBUNIT BETA
Authors:Cong, Y., Schroder, G.F., Meyer, A.S., Jakana, J., Ma, B., Dougherty, M.T., Schmid, M.F., Reissmann, S., Levitt, M., Ludtke, S.L., Frydman, J., Chiu, W.
Deposit date:2011-09-13
Release date:2012-02-15
Last modified:2018-10-03
Method:ELECTRON MICROSCOPY (10.7 Å)
Cite:Symmetry-Free Cryo-Em Structures of the Chaperonin Tric Along its ATPase-Driven Conformational Cycle.
Embo J., 31, 2012
4A0W
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MODEL BUILT AGAINST SYMMETRY-FREE CRYO-EM MAP OF TRIC-ADP-ALFX
Descriptor:T-COMPLEX PROTEIN 1 SUBUNIT BETA
Authors:Cong, Y., Schroder, G.F., Meyer, A.S., Jakana, J., Ma, B., Dougherty, M.T., Schmid, M.F., Reissmann, S., Levitt, M., Ludtke, S.L., Frydman, J., Chiu, W.
Deposit date:2011-09-13
Release date:2012-02-15
Last modified:2018-10-03
Method:ELECTRON MICROSCOPY (13.9 Å)
Cite:Symmetry-Free Cryo-Em Structures of the Chaperonin Tric Along its ATPase-Driven Conformational Cycle.
Embo J., 31, 2012
4A13
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MODEL REFINED AGAINST SYMMETRY-FREE CRYO-EM MAP OF TRIC-ADP
Descriptor:T-COMPLEX PROTEIN 1 SUBUNIT BETA
Authors:Cong, Y., Schroder, G.F., Meyer, A.S., Jakana, J., Ma, B., Dougherty, M.T., Schmid, M.F., Reissmann, S., Levitt, M., Ludtke, S.L., Frydman, J., Chiu, W.
Deposit date:2011-09-13
Release date:2012-02-15
Last modified:2018-10-03
Method:ELECTRON MICROSCOPY (11.3 Å)
Cite:Symmetry-Free Cryo-Em Structures of the Chaperonin Tric Along its ATPase-Driven Conformational Cycle.
Embo J., 31, 2012
4V8R
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THE CRYSTAL STRUCTURES OF THE EUKARYOTIC CHAPERONIN CCT REVEAL ITS FUNCTIONAL PARTITIONING
Descriptor:T-COMPLEX PROTEIN 1 SUBUNIT ALPHA, T-COMPLEX PROTEIN 1 SUBUNIT BETA, T-COMPLEX PROTEIN 1 SUBUNIT DELTA, ...
Authors:Kalisman, N., Schroder, G.F., Levitt, M.
Deposit date:2012-03-28
Release date:2014-07-09
Last modified:2014-12-10
Method:X-RAY DIFFRACTION (3.8 Å)
Cite:The Crystal Structures of the Eukaryotic Chaperonin Cct Reveal its Functional Partitioning
Structure, 21, 2013
6FGP
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NMR SOLUTION STRUCTURE OF MONOMERIC CCL5 IN COMPLEX WITH A DOUBLY-SULFATED N-TERMINAL SEGMENT OF CCR5
Descriptor:C-C chemokine receptor type 5, C-C motif chemokine 5
Authors:Anglister, J., Abayev, M.
Deposit date:2018-01-11
Release date:2018-04-18
Last modified:2018-06-13
Method:SOLUTION NMR
Cite:The solution structure of monomeric CCL5 in complex with a doubly sulfated N-terminal segment of CCR5.
FEBS J., 285, 2018
4TNA
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FURTHER REFINEMENT OF THE STRUCTURE OF YEAST T-RNA-PHE
Descriptor:TRNAPHE, MAGNESIUM ION
Authors:Hingerty, B.E., Brown, R.S., Jack, A.
Deposit date:1978-04-12
Release date:1978-04-12
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Further refinement of the structure of yeast tRNAPhe.
J.Mol.Biol., 124, 1978
3ADK
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REFINED STRUCTURE OF PORCINE CYTOSOLIC ADENYLATE KINASE AT 2.1 ANGSTROMS RESOLUTION
Descriptor:ADENYLATE KINASE, SULFATE ION
Authors:Schulz, G.E.
Deposit date:1987-11-19
Release date:1988-01-16
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Refined structure of porcine cytosolic adenylate kinase at 2.1 A resolution.
J.Mol.Biol., 199, 1988
1C6P
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T4 LYSOZYME MUTANT C54T/C97A IN THE PRESENCE OF 8 ATM ARGON
Descriptor:PROTEIN (LYSOZYME), CHLORIDE ION, BETA-MERCAPTOETHANOL
Authors:Quillin, M.L., Matthews, B.W.
Deposit date:1999-12-21
Release date:2000-10-04
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Size versus polarizability in protein-ligand interactions: binding of noble gases within engineered cavities in phage T4 lysozyme.
J.Mol.Biol., 302, 2000
1C6Q
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T4 LYSOZYME MUTANT C54T/C97A IN THE PRESENCE OF 8 ATM KRYPTON
Descriptor:PROTEIN (LYSOZYME), CHLORIDE ION, KRYPTON, ...
Authors:Quillin, M.L., Matthews, B.W.
Deposit date:1999-12-21
Release date:2000-10-04
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Size versus polarizability in protein-ligand interactions: binding of noble gases within engineered cavities in phage T4 lysozyme.
J.Mol.Biol., 302, 2000
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