Author results

2B8I
  • Download 2b8i
  • View 2b8i
Molmil generated image of 2b8i
CRYSTAL STRUCTURE AND FUNCTIONAL STUDIES REVEAL THAT PAS FACTOR FROM VIBRIO VULNIFICUS IS A NOVEL MEMBER OF THE SAPOSIN-FOLD FAMILY
Descriptor:PAS factor
Authors:Lee, J.H., Yang, S.T., Rho, S.H., Im, Y.J., Kim, S.Y., Kim, Y.R., Kim, M.K., Kang, G.B., Kim, J.I., Rhee, J.H., Eom, S.H.
Deposit date:2005-10-07
Release date:2006-02-14
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structure and functional studies reveal that PAS factor from Vibrio vulnificus is a novel member of the saposin-fold family
J.Mol.Biol., 355, 2006
5H3H
  • Download 5h3h
  • View 5h3h
Molmil generated image of 5h3h
ESTERASE (EAEST) FROM EXIGUOBACTERIUM ANTARCTICUM
Descriptor:Abhydrolase domain-containing protein, ETHANEPEROXOIC ACID
Authors:Lee, J.H., Lee, C.W.
Deposit date:2016-10-24
Release date:2017-01-11
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Esterase (EaEST) from Exiguobacterium antarcticum
To Be Published
2FB9
  • Download 2fb9
  • View 2fb9
Molmil generated image of 2fb9
CRYSTAL STRUCTURE OF THE APO FORM OF D-ALANINE: D-ALANINE LIGASE (DDL) FROM THERMUS CALDOPHILUS: A BASIS FOR THE SUBSTRATE-INDUCED CONFORMATIONAL CHANGES
Descriptor:D-alanine:D-alanine ligase
Authors:Lee, J.H., Na, Y., Eom, S.H.
Deposit date:2005-12-08
Release date:2006-08-29
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal structure of the apo form of D-alanine: D-alanine ligase (Ddl) from Thermus caldophilus: A basis for the substrate-induced conformational changes
Proteins, 64, 2006
2FJK
  • Download 2fjk
  • View 2fjk
Molmil generated image of 2fjk
CRYSTAL STRUCTURE OF FRUCTOSE-1,6-BISPHOSPHATE ALDOLASE IN THERMUS CALDOPHILUS
Descriptor:Fructose-bisphosphate aldolase, 1,3-DIHYDROXYACETONEPHOSPHATE
Authors:Lee, J.H., Im, Y.J., Rho, S.-H., Kim, M.-K., Kang, G.B., Eom, S.H.
Deposit date:2006-01-03
Release date:2006-08-08
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Stereoselectivity of fructose-1,6-bisphosphate aldolase in Thermus caldophilus
Biochem.Biophys.Res.Commun., 347, 2006
2IE8
  • Download 2ie8
  • View 2ie8
Molmil generated image of 2ie8
CRYSTAL STRUCTURE OF THERMUS CALDOPHILUS PHOSPHOGLYCERATE KINASE IN THE OPEN CONFORMATION
Descriptor:phosphoglycerate kinase
Authors:Lee, J.H., Im, Y.J., Eom, S.H.
Deposit date:2006-09-18
Release date:2006-11-07
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structure of Thermus caldophilus phosphoglycerate kinase in the open conformation
Biochem.Biophys.Res.Commun., 350, 2006
1PIB
  • Download 1pib
  • View 1pib
Molmil generated image of 1pib
SOLUTION STRUCTURE OF DNA CONTAINING CPD OPPOSITED BY GA
Descriptor:5'-D(*CP*GP*CP*AP*TP*TP*AP*CP*GP*C)-3', 5'-D(*GP*CP*GP*TP*GP*AP*TP*GP*CP*G)-3'
Authors:Lee, J.H., Park, C.J., Shin, J.S., Choi, B.S.
Deposit date:2003-05-30
Release date:2004-05-18
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:NMR structure of the DNA decamer duplex containing double T*G mismatches of cis-syn cyclobutane pyrimidine dimer: implications for DNA damage recognition by the XPC-hHR23B complex.
Nucleic Acids Res., 32, 2004
1SNH
  • Download 1snh
  • View 1snh
Molmil generated image of 1snh
SOLUTION STRUCTURE OF THE DNA DECAMER DUPLEX CONTAINING DOUBLE TG MISMATCHES OF CIS-SYN CYCLOBUTANE PYRIMIDINE DIMER
Descriptor:5'-D(*CP*GP*CP*AP*TP*TP*AP*CP*GP*C)-3', 5'-D(*GP*CP*GP*TP*GP*GP*TP*GP*CP*G)-3'
Authors:Lee, J.H., Park, C.J., Shin, J.S., Ikegami, T., Akutsu, H., Choi, B.S.
Deposit date:2004-03-11
Release date:2004-05-18
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:NMR structure of the DNA decamer duplex containing double T*G mismatches of cis-syn cyclobutane pyrimidine dimer: implications for DNA damage recognition by the XPC-hHR23B complex.
Nucleic Acids Res., 32, 2004
1XTB
  • Download 1xtb
  • View 1xtb
Molmil generated image of 1xtb
CRYSTAL STRUCTURE OF RABBIT PHOSPHOGLUCOSE ISOMERASE COMPLEXED WITH SORBITOL-6-PHOSPHATE
Descriptor:phosphoglucose isomerase, D-SORBITOL-6-PHOSPHATE
Authors:Lee, J.H., Jeffery, C.J.
Deposit date:2004-10-21
Release date:2005-03-22
Last modified:2011-11-16
Method:X-RAY DIFFRACTION (2 Å)
Cite:The crystal structure of rabbit phosphoglucose isomerase complexed with D-sorbitol-6-phosphate, an analog of the open chain form of D-glucose-6-phosphate.
Protein Sci., 14, 2005
2PYY
  • Download 2pyy
  • View 2pyy
Molmil generated image of 2pyy
CRYSTAL STRUCTURE OF THE GLUR0 LIGAND-BINDING CORE FROM NOSTOC PUNCTIFORME IN COMPLEX WITH (L)-GLUTAMATE
Descriptor:Ionotropic glutamate receptor bacterial homologue, GLUTAMIC ACID
Authors:Lee, J.H., Kang, G.B., Lim, H.-H., Ree, M., Park, C.-S., Eom, S.H.
Deposit date:2007-05-17
Release date:2008-01-22
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal structure of the GluR0 ligand-binding core from Nostoc punctiforme in complex with L-glutamate: structural dissection of the ligand interaction and subunit interface.
J.Mol.Biol., 376, 2008
3H2U
  • Download 3h2u
  • View 3h2u
Molmil generated image of 3h2u
HUMAN RAVER1 RRM1, RRM2, AND RRM3 DOMAINS IN COMPLEX WITH HUMAN VINCULIN TAIL DOMAIN VT
Descriptor:Vinculin, Raver-1
Authors:Lee, J.H., Rangarajan, E.S., Yogesha, S.D., Izard, T.
Deposit date:2009-04-14
Release date:2009-07-28
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.75 Å)
Cite:Raver1 interactions with vinculin and RNA suggest a feed-forward pathway in directing mRNA to focal adhesions
Structure, 17, 2009
3H2V
  • Download 3h2v
  • View 3h2v
Molmil generated image of 3h2v
HUMAN RAVER1 RRM1 DOMAIN IN COMPLEX WITH HUMAN VINCULIN TAIL DOMAIN VT
Descriptor:Vinculin, Raver-1
Authors:Lee, J.H., Rangarajan, E.S., Yogesha, S.D., Izard, T.
Deposit date:2009-04-14
Release date:2009-07-28
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Raver1 interactions with vinculin and RNA suggest a feed-forward pathway in directing mRNA to focal adhesions
Structure, 17, 2009
3HGQ
  • Download 3hgq
  • View 3hgq
Molmil generated image of 3hgq
STRUCTURAL AND FUNCTIONAL STUDIES OF THE YEAST CLASS II HDA1 HDAC COMPLEX
Descriptor:HDA1 complex subunit 3
Authors:Lee, J.H., Maskos, K., Huber, R.
Deposit date:2009-05-14
Release date:2009-08-18
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (3 Å)
Cite:Structural and Functional Studies of the Yeast Class II Hda1 Histone Deacetylase Complex.
J.Mol.Biol., 391, 2009
3HGT
  • Download 3hgt
  • View 3hgt
Molmil generated image of 3hgt
STRUCTURAL AND FUNCTIONAL STUDIES OF THE YEAST CLASS II HDA1 HDAC COMPLEX
Descriptor:HDA1 complex subunit 3
Authors:Lee, J.H., Maskos, K., Huber, R.
Deposit date:2009-05-14
Release date:2009-08-18
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structural and Functional Studies of the Yeast Class II Hda1 Histone Deacetylase Complex.
J.Mol.Biol., 391, 2009
3QJM
  • Download 3qjm
  • View 3qjm
Molmil generated image of 3qjm
STRUCTURAL FLEXIBILITY OF SHANK PDZ DOMAIN IS IMPORTANT FOR ITS BINDING TO DIFFERENT LIGANDS
Descriptor:SH3 and multiple ankyrin repeat domains protein 1, Beta-PIX
Authors:Lee, J.H., Park, H., Park, S.J., Kim, H.J., Eom, S.H.
Deposit date:2011-01-30
Release date:2011-04-13
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.311 Å)
Cite:The structural flexibility of the shank1 PDZ domain is important for its binding to different ligands
Biochem.Biophys.Res.Commun., 407, 2011
3QJN
  • Download 3qjn
  • View 3qjn
Molmil generated image of 3qjn
STRUCTURAL FLEXIBILITY OF SHANK PDZ DOMAIN IS IMPORTANT FOR ITS BINDING TO DIFFERENT LIGANDS
Descriptor:SH3 and multiple ankyrin repeat domains protein 1, Beta-PIX
Authors:Lee, J.H., Park, H., Park, S.J., Kim, H.J., Eom, S.H.
Deposit date:2011-01-30
Release date:2011-04-13
Last modified:2012-04-18
Method:X-RAY DIFFRACTION (2.71 Å)
Cite:The structural flexibility of the shank1 PDZ domain is important for its binding to different ligands
Biochem.Biophys.Res.Commun., 407, 2011
3UYU
  • Download 3uyu
  • View 3uyu
Molmil generated image of 3uyu
STRUCTURAL BASIS FOR THE ANTIFREEZE ACTIVITY OF AN ICE-BINDING PROTEIN (LEIBP) FROM ARCTIC YEAST
Descriptor:Antifreeze protein, GLYCEROL
Authors:Lee, J.H., Park, A.K., Do, H., Park, K.S., Moh, S.H., Chi, Y.M., Kim, H.J.
Deposit date:2011-12-06
Release date:2012-02-15
Method:X-RAY DIFFRACTION (1.57 Å)
Cite:Structural basis for the antifreeze activity of an ice-binding protein from an Arctic yeast.
J.Biol.Chem., 2012
3UYV
  • Download 3uyv
  • View 3uyv
Molmil generated image of 3uyv
CRYSTAL STRUCTURE OF A GLYCOSYLATED ICE-BINDING PROTEIN (LEIBP) FROM ARCTIC YEAST
Descriptor:Antifreeze protein, N-ACETYL-D-GLUCOSAMINE, BETA-D-MANNOSE, ...
Authors:Lee, J.H., Park, A.K., Do, H., Park, K.S., Moh, S.H., Chi, Y.M., Kim, H.J.
Deposit date:2011-12-06
Release date:2012-02-29
Method:X-RAY DIFFRACTION (2.43 Å)
Cite:Structural basis for the antifreeze activity of an ice-binding protein from an Arctic yeast.
J.Biol.Chem., 2012
3VF0
  • Download 3vf0
  • View 3vf0
Molmil generated image of 3vf0
RAVER1 IN COMPLEX WITH METAVINCULIN L954 DELETION MUTANT
Descriptor:Vinculin, Ribonucleoprotein PTB-binding 1, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, ...
Authors:Lee, J.H., Vonrhein, C., Bricogne, G., Izard, T.
Deposit date:2012-01-09
Release date:2012-07-25
Last modified:2012-09-19
Method:X-RAY DIFFRACTION (2.54 Å)
Cite:The Metavinculin Tail Domain Directs Constitutive Interactions with Raver1 and vinculin RNA.
J.Mol.Biol., 422, 2012
4LQ8
  • Download 4lq8
  • View 4lq8
Molmil generated image of 4lq8
RICKETTSIA RICKETTSII CELL SURFACE ANTIGEN 4 (SCA4) HEAD DOMAIN (RESIDUES 21-360)
Descriptor:Sca-family protein
Authors:Lee, J.H., Vonrhein, C., Bricogne, G., Izard, T.
Deposit date:2013-07-17
Release date:2013-08-28
Last modified:2013-10-23
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal structure of the N-terminal domains of the surface cell antigen 4 of Rickettsia.
Protein Sci., 22, 2013
5ACO
  • Download 5aco
  • View 5aco
Molmil generated image of 5aco
CRYO-EM STRUCTURE OF PGT128 FAB IN COMPLEX WITH BG505 SOSIP.664 ENV TRIMER
Descriptor:HIV-1 ENVELOPE GLYCOPROTEIN, PGT128 FAB, N-ACETYL-D-GLUCOSAMINE, ...
Authors:Lee, J.H., Ward, A.B.
Deposit date:2015-08-17
Release date:2015-09-30
Last modified:2018-10-03
Method:ELECTRON MICROSCOPY (4.36 Å)
Cite:Model Building and Refinement of a Natively Glycosylated HIV-1 Env Protein by High-Resolution Cryoelectron Microscopy.
Structure, 23, 2015
5AWN
  • Download 5awn
  • View 5awn
Molmil generated image of 5awn
CRYSTAL STRUCTURE OF HUMAN ANTI-HIV-1 BROADLY NEUTRALIZING ANTIBODY 3BC176 FAB
Descriptor:Heavy chain of 3BC176 Fab, Light chain of 3BC176 Fab
Authors:Lee, J.H., Wilson, I.A., Ward, A.B.
Deposit date:2015-07-06
Release date:2015-11-11
Last modified:2017-10-18
Method:X-RAY DIFFRACTION (1.887 Å)
Cite:Antibodies to a conformational epitope on gp41 neutralize HIV-1 by destabilizing the Env spike.
Nat Commun, 6, 2015
5CCK
  • Download 5cck
  • View 5cck
Molmil generated image of 5cck
CRYSTAL STRUCTURE OF HUMAN ANTI-HIV-1 BROADLY NEUTRALIZING ANTIBODY 3BC315 FAB
Descriptor:Antibody 3BC315 Fab heavy chain, Antibody 3BC315 Fab light chain, 3-CYCLOHEXYL-1-PROPYLSULFONIC ACID
Authors:Lee, J.H., Ward, A.B., Wilson, I.A.
Deposit date:2015-07-02
Release date:2015-10-07
Last modified:2017-09-13
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Antibodies to a conformational epitope on gp41 neutralize HIV-1 by destabilizing the Env spike.
Nat Commun, 6, 2015
5FUU
  • Download 5fuu
  • View 5fuu
Molmil generated image of 5fuu
ECTODOMAIN OF CLEAVED WILD TYPE JR-FL ENVDCT TRIMER IN COMPLEX WITH PGT151 FAB
Descriptor:HIV-1 ENVELOPE GLYCOPROTEIN GP160, IMMUNOGLOBULIN G PGT151, N-ACETYL-D-GLUCOSAMINE, ...
Authors:Lee, J.H., Ward, A.B.
Deposit date:2016-01-29
Release date:2016-03-09
Last modified:2017-08-02
Method:ELECTRON MICROSCOPY (4.2 Å)
Cite:Cryo-Em Structure of a Native, Fully Glycosylated and Cleaved HIV-1 Envelope Trimer
Science, 351, 2016
5V8L
  • Download 5v8l
  • View 5v8l
Molmil generated image of 5v8l
BG505 SOSIP.664 TRIMER IN COMPLEX WITH BROADLY NEUTRALIZING HIV ANTIBODIES 3BNC117 AND PGT145
Descriptor:gp120, gp41, 3BNC117 antibody, ...
Authors:Lee, J.H., Ward, A.B.
Deposit date:2017-03-22
Release date:2017-05-03
Last modified:2017-09-13
Method:ELECTRON MICROSCOPY (4.3 Å)
Cite:A Broadly Neutralizing Antibody Targets the Dynamic HIV Envelope Trimer Apex via a Long, Rigidified, and Anionic beta-Hairpin Structure.
Immunity, 46, 2017
5V8M
  • Download 5v8m
  • View 5v8m
Molmil generated image of 5v8m
BG505 SOSIP.664 TRIMER IN COMPLEX WITH BROADLY NEUTRALIZING HIV ANTIBODY 3BNC117
Descriptor:gp120, gp41, antibody 3BNC117, ...
Authors:Lee, J.H., Cottrell, C.A., Ward, A.B.
Deposit date:2017-03-22
Release date:2017-05-03
Last modified:2017-07-26
Method:ELECTRON MICROSCOPY (4.4 Å)
Cite:A Broadly Neutralizing Antibody Targets the Dynamic HIV Envelope Trimer Apex via a Long, Rigidified, and Anionic beta-Hairpin Structure.
Immunity, 46, 2017
PDBj@FacebookPDBj@TwitterwwPDBwwPDB Foundation

Copyright © 2013-2019 Protein Data Bank Japan