Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
4Q17
DownloadVisualize
BU of 4q17 by Molmil
Free form of TvNiR, middle dose data set
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, CALCIUM ION, CITRIC ACID, ...
Authors:Lazarenko, V.A, Polyakov, K.M, Trofimov, A.A, Popov, A.N, Tikhonova, T.V, Tikhonov, A.V, Popov, V.O.
Deposit date:2014-04-03
Release date:2014-09-10
Last modified:2017-11-22
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:X-ray-induced changes in the active site structure of octaheme cytochrome c nitrite reductase and its substrate complexes
To be published
4Q0T
DownloadVisualize
BU of 4q0t by Molmil
Free form of TvNiR, low dose data set
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, CALCIUM ION, CITRIC ACID, ...
Authors:Lazarenko, V.A, Polyakov, K.M, Trofimov, A.A, Popov, A.N, Tikhonova, T.V, Tikhonov, A.V, Popov, V.O.
Deposit date:2014-04-02
Release date:2014-09-10
Last modified:2017-11-22
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:X-ray-induced changes in the active site structure of octaheme cytochrome c nitrite reductase and its substrate complexes
TO BE PUBLISHED
4Q5B
DownloadVisualize
BU of 4q5b by Molmil
TvNiR in complex with sulfite, high dose data set
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, ACETATE ION, CALCIUM ION, ...
Authors:Lazarenko, V.A, Polyakov, K.M, Trofimov, A.A, Popov, A.N, Tikhonova, T.V, Tikhonov, A.V, Popov, V.O.
Deposit date:2014-04-16
Release date:2014-09-10
Last modified:2017-11-22
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:X-ray-induced changes in the active site structure of octaheme cytochrome c nitrite reductase and its substrate complexes
To be Published
4Q1O
DownloadVisualize
BU of 4q1o by Molmil
Free form of TvNiR, high dose data set
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, CALCIUM ION, CITRIC ACID, ...
Authors:Lazarenko, V.A, Polyakov, K.M, Trofimov, A.A, Popov, A.N, Tikhonova, T.V, Tikhonov, A.V, Popov, V.O.
Deposit date:2014-04-04
Release date:2014-09-10
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:X-ray-induced changes in the active site structure of octaheme cytochrome c nitrite reductase and its substrate complexes
To be Published
4Q5C
DownloadVisualize
BU of 4q5c by Molmil
TvNiR in complex with sulfite, middle dose data set
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, ACETATE ION, ...
Authors:Lazarenko, V.A, Polyakov, K.M, Trofimov, A.A, Popov, A.N, Tikhonova, T.V, Tikhonov, A.V, Popov, V.O.
Deposit date:2014-04-16
Release date:2014-09-03
Last modified:2017-11-22
Method:X-RAY DIFFRACTION (1.62 Å)
Cite:X-ray-induced changes in the active site structure of octaheme cytochrome c nitrite reductase and its substrate complexes
To be Published
4Q4U
DownloadVisualize
BU of 4q4u by Molmil
TvNiR in complex with sulfite, low dose data set
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, ACETATE ION, ...
Authors:Lazarenko, V.A, Polyakov, K.M, Trofimov, A.A, Popov, A.N, Tikhonova, T.V, Tikhonov, A.V, Popov, V.O.
Deposit date:2014-04-15
Release date:2014-09-03
Last modified:2017-11-22
Method:X-RAY DIFFRACTION (1.62 Å)
Cite:X-ray-induced changes in the active site structure of octaheme cytochrome c nitrite reductase and its substrate complexes
to be published
7P1Z
DownloadVisualize
BU of 7p1z by Molmil
Novel GH12 endogluconase from Aspergillus cervinus
Descriptor: ACETATE ION, DI(HYDROXYETHYL)ETHER, Glycoside hydrolase, ...
Authors:Lazarenko, V.A, Rykov, S.V, Nikolaeva, A.Y, Berezina, O.V, Akentyev, F.I.
Deposit date:2021-07-03
Release date:2021-07-21
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.17 Å)
Cite:Unusual substrate specificity in GH family 12: structure-function analysis of glucanases Bgh12A and Xgh12B from Aspergillus cervinus, and Egh12 from Thielavia terrestris.
Appl.Microbiol.Biotechnol., 106, 2022
8QVO
DownloadVisualize
BU of 8qvo by Molmil
L211Q, L254N, T262G mutant of carboxypeptidase T from Thermoactinomyces vulgaris
Descriptor: CALCIUM ION, Carboxypeptidase T, SULFATE ION, ...
Authors:Timofeev, V.I, Dorovatovskii, P.V, Lazarenko, V.A, Akparov, V.K, Kuranova, I.P.
Deposit date:2023-10-18
Release date:2024-01-17
Method:X-RAY DIFFRACTION (1.96 Å)
Cite:L211Q, L254N, T262G mutant of carboxypeptidase T from Thermoactinomyces vulgaris
To Be Published
6XW2
DownloadVisualize
BU of 6xw2 by Molmil
Crystal structure of the bright genetically encoded calcium indicator NCaMP7 based on mNeonGreen fluorescent protein
Descriptor: CALCIUM ION, Genetically encoded calcium indicator NCaMP7 based on mNeonGreen fluorescent protein, SULFATE ION
Authors:Boyko, K.M, Nikolaeva, A.Y, Korzhenevskiy, D.A, Lazarenko, V.A, Subach, O.M, Subach, F.V.
Deposit date:2020-01-22
Release date:2020-01-29
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Novel Genetically Encoded Bright Positive Calcium Indicator NCaMP7 Based on the mNeonGreen Fluorescent Protein.
Int J Mol Sci, 21, 2020
4L3X
DownloadVisualize
BU of 4l3x by Molmil
Nitrite complex of TvNiR, first middle dose data set
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, CALCIUM ION, Eight-heme nitrite reductase, ...
Authors:Trofimov, A.A, Polyakov, K.M, Lazarenko, V.A, Popov, A.N, Tikhonova, T.V, Tikhonov, A.V, Popov, V.O.
Deposit date:2013-06-07
Release date:2014-06-11
Last modified:2017-11-15
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Investigation of the X-ray-induced nitrite reduction catalysed by cytochrome c nitrite reductase from the bacterium Thioalkalivibrio nitratireducens
To be Published
4L3Z
DownloadVisualize
BU of 4l3z by Molmil
Nitrite complex of TvNiR, second middle dose data set
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, CALCIUM ION, Eight-heme nitrite reductase, ...
Authors:Trofimov, A.A, Polyakov, K.M, Lazarenko, V.A, Popov, A.N, Tikhonova, T.V, Tikhonov, A.V, Popov, V.O.
Deposit date:2013-06-07
Release date:2014-06-11
Last modified:2017-11-15
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Investigation of the X-ray-induced nitrite reduction catalysed by cytochrome c nitrite reductase from the bacterium Thioalkalivibrio nitratireducens
To be Published
4L38
DownloadVisualize
BU of 4l38 by Molmil
Nitrite complex of TvNiR, low dose data set
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, CALCIUM ION, Eight-heme nitrite reductase, ...
Authors:Trofimov, A.A, Polyakov, K.M, Lazarenko, V.A, Popov, A.N, Tikhonova, T.V, Tikhonov, A.V, Popov, V.O.
Deposit date:2013-06-05
Release date:2014-07-16
Last modified:2017-11-15
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Investigation of the X-ray-induced nitrite reduction catalysed by cytochrome c nitrite reductase from the bacterium Thioalkalivibrio nitratireducens
To be Published
4L3Y
DownloadVisualize
BU of 4l3y by Molmil
Nitrite complex of TvNiR, high dose data set (NO complex)
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, CALCIUM ION, Eight-heme nitrite reductase, ...
Authors:Trofimov, A.A, Polyakov, K.M, Lazarenko, V.A, Popov, A.N, Tikhonova, T.V, Tikhonov, A.V, Popov, V.O.
Deposit date:2013-06-07
Release date:2014-06-11
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Investigation of the X-ray-induced nitrite reduction catalysed by cytochrome c nitrite reductase from the bacterium Thioalkalivibrio nitratireducens
To be Published
6QWX
DownloadVisualize
BU of 6qwx by Molmil
HEWL lysozyme, crystallized from NiCl2 solution
Descriptor: CHLORIDE ION, Lysozyme C, NICKEL (II) ION
Authors:Boikova, A.S, Dorovatovskii, P.V, Dyakova, Y.A, Ilina, K.B, Kuranova, I.P, Lazarenko, V.A, Marchenkova, M.A, Pisarevsky, Y.V, Timofeev, V.I, Kovalchuk, M.V.
Deposit date:2019-03-06
Release date:2019-03-13
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.35 Å)
Cite:HEWL lysozyme, crystallized from different chlorides
To Be Published
6QX0
DownloadVisualize
BU of 6qx0 by Molmil
HEWL lysozyme, crystallized from LiCl solution
Descriptor: CHLORIDE ION, Lysozyme C
Authors:Boikova, A.S, Dorovatovskii, P.V, Dyakova, Y.A, Ilina, K.B, Kuranova, I.P, Lazarenko, V.A, Marchenkova, M.A, Pisarevsky, Y.V, Timofeev, V.I, Kovalchuk, M.V.
Deposit date:2019-03-06
Release date:2019-03-13
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.35 Å)
Cite:HEWL lysozyme, crystallized from different chlorides
To Be Published
6QWW
DownloadVisualize
BU of 6qww by Molmil
HEWL lysozyme, crystallized from CuCl2 solution
Descriptor: CHLORIDE ION, COPPER (II) ION, Lysozyme C
Authors:Boikova, A.S, Dorovatovskii, P.V, Dyakova, Y.A, Ilina, K.B, Kuranova, I.P, Lazarenko, V.A, Marchenkova, M.A, Pisarevsky, Y.V, Timofeev, V.I, Kovalchuk, M.V.
Deposit date:2019-03-06
Release date:2019-03-13
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.35 Å)
Cite:HEWL lysozyme, crystallized from different chlorides
To Be Published
6QWY
DownloadVisualize
BU of 6qwy by Molmil
HEWL lysozyme, crystallized from NaCl solution
Descriptor: CHLORIDE ION, Lysozyme C, SODIUM ION
Authors:Boikova, A.S, Dorovatovskii, P.V, Dyakova, Y.A, Ilina, K.B, Kuranova, I.P, Lazarenko, V.A, Marchenkova, M.A, Pisarevsky, Y.V, Timofeev, V.I, Kovalchuk, M.V.
Deposit date:2019-03-06
Release date:2019-03-13
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.35 Å)
Cite:HEWL lysozyme, crystallized from different chlorides
To Be Published
6QWZ
DownloadVisualize
BU of 6qwz by Molmil
HEWL lysozyme, crystallized from KCl solution
Descriptor: CHLORIDE ION, Lysozyme C
Authors:Boikova, A.S, Dorovatovskii, P.V, Dyakova, Y.A, Ilina, K.B, Kuranova, I.P, Lazarenko, V.A, Marchenkova, M.A, Pisarevsky, Y.V, Timofeev, V.I, Kovalchuk, M.V.
Deposit date:2019-03-06
Release date:2019-03-13
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.35 Å)
Cite:HEWL lysozyme, crystallized from different chlorides
To Be Published
7NE7
DownloadVisualize
BU of 7ne7 by Molmil
oligopeptidase B from S. proteomaculans with modified hinge region in complex with N-[(1S)-5-amino-1-(chloroacetyl)pentyl]-4-methylbenzenesulfonamide
Descriptor: N-[(1S)-5-amino-1-(chloroacetyl)pentyl]-4-methylbenzenesulfonamide, Oligopeptidase B, SPERMINE
Authors:Petrenko, D.E, Nikolaeva, A.Y, Lazarenko, V.A, Dorovatovskiy, P.V, Vlaskina, A.V, Mikhailova, A.G, Rakitina, T.V, Timofeev, V.I.
Deposit date:2021-02-03
Release date:2021-02-17
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:The Crystal Structure of N alpha-p-tosyl-lysyl Chloromethylketone-Bound Oligopeptidase B from Serratia Proteamaculans Revealed a New Type of Inhibitor Binding
Crystals, 11, 2021
7NE4
DownloadVisualize
BU of 7ne4 by Molmil
E125A mutant of oligopeptidase B from S. proteomaculans with modified hinge region
Descriptor: Oligopeptidase B, SPERMINE
Authors:Petrenko, D.E, Nikolaeva, A.Y, Lazarenko, V.A, Dorovatovskiy, P.V, Vlaskina, A.V, Mikhailova, A.G, Rakitina, T.V, Timofeev, V.I.
Deposit date:2021-02-03
Release date:2021-03-03
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.717 Å)
Cite:First Crystal Structure of Bacterial Oligopeptidase B in an Intermediate State: The Roles of the Hinge Region Modification and Spermine.
Biology (Basel), 10, 2021
7NE5
DownloadVisualize
BU of 7ne5 by Molmil
catalytically non active S532A mutant of oligopeptidase B from S. proteomaculans with modified hinge region
Descriptor: Oligopeptidase B, SPERMINE
Authors:Petrenko, D.E, Nikolaeva, A.Y, Lazarenko, V.A, Dorovatovskiy, P.V, Vlaskina, A.V, Mikhailova, A.G, Rakitina, T.V, Timofeev, V.I.
Deposit date:2021-02-03
Release date:2021-03-31
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.88 Å)
Cite:First Crystal Structure of Bacterial Oligopeptidase B in an Intermediate State: The Roles of the Hinge Region Modification and Spermine.
Biology (Basel), 10, 2021
7OB1
DownloadVisualize
BU of 7ob1 by Molmil
OLIGOPEPTIDASE B FROM S. PROTEOMACULANS WITH MODIFIED HINGE
Descriptor: Oligopeptidase B, SPERMINE
Authors:Petrenko, D.E, Nikolaeva, A.Y, Lazarenko, V.A, Dorovatovskiy, P.V, Vlaskina, A.V, Korzhenevskiy, D.A, Mikhailova, A.G, Rakitina, T.V, Timofeev, V.I.
Deposit date:2021-04-20
Release date:2021-05-19
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2 Å)
Cite:First Crystal Structure of Bacterial Oligopeptidase B in an Intermediate State: The Roles of the Hinge Region Modification and Spermine.
Biology (Basel), 10, 2021

217705

PDB entries from 2024-03-27

PDB statisticsPDBj update infoContact PDBjnumon