Author results

1I29
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CRYSTAL STRUCTURE OF CSDB COMPLEXED WITH L-PROPARGYLGLYCINE
Descriptor:CSDB, L-PROPARGYLGLYCINE, PYRIDOXAL-5'-PHOSPHATE
Authors:Mihara, H., Fujii, T., Kurihara, T., Hata, Y., Esaki, N.
Deposit date:2001-02-07
Release date:2003-07-01
Last modified:2017-10-04
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Structure of external aldimine of Escherichia coli CsdB, an IscS/NifS homolog: implications for its specificity toward selenocysteine.
J.BIOCHEM.(TOKYO), 131, 2002
1JUD
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L-2-HALOACID DEHALOGENASE
Descriptor:L-2-HALOACID DEHALOGENASE
Authors:Hisano, T., Hata, Y., Fujii, T., Liu, J.-Q., Kurihara, T., Esaki, N., Soda, K.
Deposit date:1996-06-03
Release date:1996-12-07
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal structure of L-2-haloacid dehalogenase from Pseudomonas sp. YL. An alpha/beta hydrolase structure that is different from the alpha/beta hydrolase fold.
J.Biol.Chem., 271, 1996
1QH9
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ENZYME-PRODUCT COMPLEX OF L-2-HALOACID DEHALOGENASE
Descriptor:2-HALOACID DEHALOGENASE, LACTIC ACID
Authors:Li, Y.-F., Hata, Y., Fujii, T., Kurihara, T., Esaki, N.
Deposit date:1999-05-12
Release date:2000-05-24
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:The Structure of L-2-Haloacid Dehalogenase Complexed with a Reaction Product Reveals the Mechanism of Intermediate Hydrolysis in Dehalogenase
To be Published
1C0N
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CSDB PROTEIN, NIFS HOMOLOGUE
Descriptor:PROTEIN (CSDB PROTEIN), PYRIDOXAL-5'-PHOSPHATE, ACETIC ACID
Authors:Fujii, T., Maeda, M., Mihara, H., Kurihara, T., Esaki, N., Hata, Y.
Deposit date:1999-07-17
Release date:2000-07-17
Last modified:2017-10-04
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Structure of a NifS homologue: X-ray structure analysis of CsdB, an Escherichia coli counterpart of mammalian selenocysteine lyase
Biochemistry, 39, 2000
1ZRM
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CRYSTAL STRUCTURE OF THE REACTION INTERMEDIATE OF L-2-HALOACID DEHALOGENASE WITH 2-CHLORO-N-BUTYRATE
Descriptor:L-2-HALOACID DEHALOGENASE, BUTANOIC ACID
Authors:Li, Y.-F., Hata, Y., Fujii, T., Hisano, T., Nishihara, M., Kurihara, T., Esaki, N.
Deposit date:1998-03-03
Release date:1999-03-23
Last modified:2018-03-14
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structures of reaction intermediates of L-2-haloacid dehalogenase and implications for the reaction mechanism.
J.Biol.Chem., 273, 1998
1ZRN
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INTERMEDIATE STRUCTURE OF L-2-HALOACID DEHALOGENASE WITH MONOCHLOROACETATE
Descriptor:L-2-HALOACID DEHALOGENASE, ACETIC ACID
Authors:Li, Y.-F., Hata, Y., Fujii, T., Hisano, T., Nishihara, M., Kurihara, T., Esaki, N.
Deposit date:1998-03-03
Release date:1999-03-23
Last modified:2018-03-14
Method:X-RAY DIFFRACTION (1.83 Å)
Cite:Crystal structures of reaction intermediates of L-2-haloacid dehalogenase and implications for the reaction mechanism.
J.Biol.Chem., 273, 1998
1WOJ
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CRYSTAL STRUCTURE OF HUMAN PHOSPHODIESTERASE
Descriptor:2',3'-cyclic-nucleotide 3'-phosphodiesterase, PHOSPHATE ION
Authors:Sakamoto, Y., Tanaka, N., Ichimiya, T., Kurihara, T., Nakamura, K.T.
Deposit date:2004-08-19
Release date:2005-03-15
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structure of the catalytic fragment of human brain 2',3'-cyclic-nucleotide 3'-phosphodiesterase
J.Mol.Biol., 346, 2005
2DP7
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CRYSTAL STRUCTURE OF D(CGCGAATXCGCG) WHERE X IS 5-(N-AMINOHEXYL)CARBAMOYL-2'-DEOXYURIDINE
Descriptor:DNA (5'-D(*DCP*DGP*DCP*DGP*DAP*DAP*DTP*DUP*DCP*DGP*DCP*DG)-3'), MAGNESIUM ION, (6-AMINOHEXYL)CARBAMIC ACID, ...
Authors:Juan, E.C.M., Kondo, J., Kurihara, T., Ito, T., Ueno, Y., Matsuda, A., Takenaka, A.
Deposit date:2006-05-08
Release date:2007-04-17
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Crystal structures of DNA:DNA and DNA:RNA duplexes containing 5-(N-aminohexyl)carbamoyl-modified uracils reveal the basis for properties as antigene and antisense molecules
Nucleic Acids Res., 35, 2007
2DPB
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CRYSTAL STRUCTURE OF D(CGCGAATXCGCG) WHERE X IS 5-(N-AMINOHEXYL)CARBAMOYL-2'-DEOXYURIDINE
Descriptor:DNA (5'-D(*DCP*DGP*DCP*DGP*DAP*DAP*DTP*DUP*DCP*DGP*DCP*DG)-3'), (6-AMINOHEXYL)CARBAMIC ACID, POTASSIUM ION
Authors:Juan, E.C.M., Kondo, J., Kurihara, T., Ito, T., Ueno, Y., Matsuda, A., Takenaka, A.
Deposit date:2006-05-08
Release date:2007-04-17
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Crystal structures of DNA:DNA and DNA:RNA duplexes containing 5-(N-aminohexyl)carbamoyl-modified uracils reveal the basis for properties as antigene and antisense molecules
Nucleic Acids Res., 35, 2007
2DPC
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CRYSTAL STRUCTURE OF D(CGCGAATXCGCG) WHERE X IS 5-(N-AMINOHEXYL)CARBAMOYL-2'-O-METHYLURIDINE
Descriptor:DNA (5'-D(*DCP*DGP*DCP*DGP*DAP*DAP*DTP*(OMU)P*DCP*DGP*DCP*DG)-3'), COBALT (II) ION, MAGNESIUM ION, ...
Authors:Juan, E.C.M., Kondo, J., Kurihara, T., Ito, T., Ueno, Y., Matsuda, A., Takenaka, A.
Deposit date:2006-05-08
Release date:2007-04-17
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Crystal structures of DNA:DNA and DNA:RNA duplexes containing 5-(N-aminohexyl)carbamoyl-modified uracils reveal the basis for properties as antigene and antisense molecules
Nucleic Acids Res., 35, 2007
1WTJ
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CRYSTAL STRUCTURE OF DELTA1-PIPERIDEINE-2-CARBOXYLATE REDUCTASE FROM PSEUDOMONAS SYRINGAE PVAR.TOMATO
Descriptor:ureidoglycolate dehydrogenase
Authors:Goto, M., Muramatsu, H., Mihara, H., Kurihara, T., Esaki, N., Omi, R., Miyahara, I., Hirotsu, K.
Deposit date:2004-11-24
Release date:2005-10-04
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Crystal structures of Delta1-piperideine-2-carboxylate/Delta1-pyrroline-2-carboxylate reductase belonging to a new family of NAD(P)H-dependent oxidoreductases: conformational change, substrate recognition, and stereochemistry of the reaction
J.Biol.Chem., 280, 2005
2CWF
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CRYSTAL STRUCTURE OF DELTA1-PIPERIDEINE-2-CARBOXYLATE REDUCTASE FROM PSEUDOMONAS SYRINGAE COMPLEXED WITH NADPH
Descriptor:delta1-piperideine-2-carboxylate reductase, NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
Authors:Goto, M., Muramatsu, H., Mihara, H., Kurihara, T., Esaki, N., Omi, R., Miyahara, I., Hirotsu, K.
Deposit date:2005-06-20
Release date:2005-10-04
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structures of Delta1-piperideine-2-carboxylate/Delta1-pyrroline-2-carboxylate reductase belonging to a new family of NAD(P)H-dependent oxidoreductases: conformational change, substrate recognition, and stereochemistry of the reaction
J.Biol.Chem., 280, 2005
2CWH
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CRYSTAL STRUCTURE OF DELTA1-PIPERIDEINE-2-CARBOXYLATE REDUCTASE FROM PSEUDOMONAS SYRINGAE COMPLEXED WITH NADPH AND PYRROLE-2-CARBOXYLATE
Descriptor:delta1-piperideine-2-carboxylate reductase, NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, PYRROLE-2-CARBOXYLATE
Authors:Goto, M., Muramatsu, H., Mihara, H., Kurihara, T., Esaki, N., Omi, R., Miyahara, I., Hirotsu, K.
Deposit date:2005-06-20
Release date:2005-10-04
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystal structures of Delta1-piperideine-2-carboxylate/Delta1-pyrroline-2-carboxylate reductase belonging to a new family of NAD(P)H-dependent oxidoreductases: conformational change, substrate recognition, and stereochemistry of the reaction
J.Biol.Chem., 280, 2005
3SMV
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X-RAY CRYSTAL STRUCTURE OF L-AZETIDINE-2-CARBOXYLATE HYDROLASE
Descriptor:S-(-)-azetidine-2-carboxylate hydrolase, GLYCEROL, IMIDAZOLE
Authors:Toyoda, M., Mikami, B., Jitsumori, K., Wackett, L.P., Esaki, N., Kurihara, T.
Deposit date:2011-06-28
Release date:2012-07-18
Method:X-RAY DIFFRACTION (1.38 Å)
Cite:Crystal structure of L-Azetidine-2-carboxylate hydrolase from Pseudomonas sp. strain A2C
To be Published
3WJ8
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CRYSTAL STRUCTURE OF DL-2-HALOACID DEHALOGENASE MUTANT WITH 2-BROMO-2-METHYLPROPIONATE
Descriptor:DL-2-haloacid dehalogenase, 2-bromo-2-methylpropanoic acid, GLYCEROL
Authors:Siwek, A., Omi, R., Hirotsu, K., Jitsumori, K., Esaki, N., Kurihara, T., Paneth, P.
Deposit date:2013-10-07
Release date:2013-11-27
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Binding modes of DL-2-haloacid dehalogenase revealed by crystallography, modeling and isotope effects studies.
Arch.Biochem.Biophys., 540, 2013
4N2X
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CRYSTAL STRUCTURE OF DL-2-HALOACID DEHALOGENASE
Descriptor:DL-2-haloacid dehalogenase, GLYCEROL
Authors:Siwek, A., Omi, R., Hirotsu, K., Jitsumori, K., Esaki, N., Kurihara, T., Paneth, P.
Deposit date:2013-10-06
Release date:2013-11-27
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Binding modes of DL-2-haloacid dehalogenase revealed by crystallography, modeling and isotope effects studies.
Arch.Biochem.Biophys., 540, 2013
2DTJ
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CRYSTAL STRUCTURE OF REGULATORY SUBUNIT OF ASPARTATE KINASE FROM CORYNEBACTERIUM GLUTAMICUM
Descriptor:Aspartokinase, THREONINE, CITRIC ACID
Authors:Yoshida, A., Tomita, T., Fushinobu, S., Kuzuyama, T., Nishiyama, M.
Deposit date:2006-07-12
Release date:2007-05-01
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.58 Å)
Cite:Structural Insight into Concerted Inhibition of alpha(2)beta(2)-Type Aspartate Kinase from Corynebacterium glutamicum
J.Mol.Biol., 368, 2007
2ZPU
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CRYSTAL STRUCTURE OF MODIFIED SERINE RACEMASE FROM S.POMBE.
Descriptor:Uncharacterized protein C320.14, MAGNESIUM ION, N-(5'-PHOSPHOPYRIDOXYL)-D-ALANINE
Authors:Goto, M.
Deposit date:2008-07-29
Release date:2009-04-28
Last modified:2017-10-11
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Serine racemase with catalytically active lysinoalanyl residue.
J.Biochem., 145, 2009
1WTC
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CRYSTAL STRUCTURE OF S.POMBE SERINE RACEMASE COMPLEX WITH AMPPCP
Descriptor:Hypothetical protein C320.14 in chromosome III, MAGNESIUM ION, PYRIDOXAL-5'-PHOSPHATE, ...
Authors:Goto, M., Miyahara, I., Hirotsu, K.
Deposit date:2004-11-22
Release date:2005-11-01
Last modified:2014-05-14
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal structure of a homolog of mammalian serine racemase from Schizosaccharomyces pombe
J.Biol.Chem., 284, 2009
2DQO
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CRYSTAL STRUCTURE OF D(CXCTXCTTC):R(GAAGAAGAG) WHERE X IS 5-(N-AMINOHEXYL)CARBAMOYL-2'-O-METHYLURIDINE
Descriptor:DNA (5'-D(*DCP*(OMU)P*DCP*DTP*(OMU)P*DCP*DTP*DTP*DC)-3'), RNA (5'-R(*GP*AP*AP*GP*AP*AP*GP*AP*G)-3'), SODIUM ION, ...
Authors:Juan, E.C.M., Kondo, J., Ito, T., Ueno, Y., Matsuda, A., Takenaka, A.
Deposit date:2006-05-29
Release date:2007-04-17
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structures of DNA:DNA and DNA:RNA duplexes containing 5-(N-aminohexyl)carbamoyl-modified uracils reveal the basis for properties as antigene and antisense molecules
Nucleic Acids Res., 35, 2007
2DQP
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STRUCTURAL ANALYSES OF DNA:DNA AND RNA:DNA DUPLEXES CONTAINING 5-(N-AMINOHEXYL)CARBAMOYL MODIFIED URIDINES
Descriptor:DNA (5'-D(*DCP*(OMU)P*DCP*DTP*(OMU)P*DCP*DTP*DTP*DC)-3'), RNA (5'-R(*GP*AP*AP*GP*AP*AP*GP*AP*G)-3'), (6-AMINOHEXYL)CARBAMIC ACID
Authors:Juan, E.C.M., Kondo, J., Ito, T., Ueno, Y., Matsuda, A., Takenaka, A.
Deposit date:2006-05-29
Release date:2007-04-17
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal structures of DNA:DNA and DNA:RNA duplexes containing 5-(N-aminohexyl)carbamoyl-modified uracils reveal the basis for properties as antigene and antisense molecules
Nucleic Acids Res., 35, 2007
2DQQ
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CRYSTAL STRUCTURE OF D(CXCTXCTTC):R(GAAGAAGAG) WHERE X IS 5-(N-AMINOHEXYL)CARBAMOYL-2'-O-METHYLURIDINE
Descriptor:DNA (5'-D(*DCP*(OMU)P*DCP*DTP*(OMU)P*DCP*DTP*DTP*DC)-3'), RNA (5'-R(*GP*AP*AP*GP*AP*AP*GP*AP*G)-3'), (6-AMINOHEXYL)CARBAMIC ACID
Authors:Juan, E.C.M., Kondo, J., Ito, T., Ueno, Y., Matsuda, A., Takenaka, A.
Deposit date:2006-05-29
Release date:2007-04-17
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structures of DNA:DNA and DNA:RNA duplexes containing 5-(N-aminohexyl)carbamoyl-modified uracils reveal the basis for properties as antigene and antisense molecules
Nucleic Acids Res., 35, 2007
2ZR8
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CRYSTAL STRUCTURE OF MODIFIED SERINE RACEMASE COMPLEXED WITH SERINE
Descriptor:Uncharacterized protein C320.14, N-(5'-PHOSPHOPYRIDOXYL)-D-ALANINE, SERINE, ...
Authors:Goto, M.
Deposit date:2008-08-25
Release date:2009-07-28
Last modified:2017-10-11
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal structure of a homolog of mammalian serine racemase from Schizosaccharomyces pombe
J.Biol.Chem., 284, 2009
3B12
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CRYSTAL STRUCTURE OF THE FLUOROACETATE DEHALOGENASE D104 MUTANT FROM BURKHOLDERIA SP. FA1 IN COMPLEX WITH FLUOROACETATE
Descriptor:Fluoroacetate dehalogenase, fluoroacetic acid, MAGNESIUM ION
Authors:Omi, R., Hirotsu, K.
Deposit date:2011-06-19
Release date:2012-06-20
Last modified:2013-06-19
Method:X-RAY DIFFRACTION (1.2 Å)
Cite:Substrate specificity of fluoroacetate dehalogenase: an insight from crystallographic analysis, fluorescence spectroscopy, and theoretical computations
Chemistry, 18, 2012
1WLY
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CRYSTAL STRUCTURE OF 2-HALOACRYLATE REDUCTASE
Descriptor:2-haloacrylate reductase
Authors:Omi, R.
Deposit date:2004-06-30
Release date:2005-10-04
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Crystal Structure of 2-Haloacrylate Reductase
To be Published
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