Author results

1ARP
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CRYSTAL STRUCTURE OF THE FUNGAL PEROXIDASE FROM ARTHROMYCES RAMOSUS AT 1.9 ANGSTROMS RESOLUTION: STRUCTURAL COMPARISONS WITH THE LIGNIN AND CYTOCHROME C PEROXIDASES
Descriptor:PEROXIDASE, N-ACETYL-D-GLUCOSAMINE, CALCIUM ION, ...
Authors:Kunishima, N., Fukuyama, K.
Deposit date:1993-06-18
Release date:1994-01-31
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal structure of the fungal peroxidase from Arthromyces ramosus at 1.9 A resolution. Structural comparisons with the lignin and cytochrome c peroxidases.
J.Mol.Biol., 235, 1994
1EWK
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CRYSTAL STRUCTURE OF METABOTROPIC GLUTAMATE RECEPTOR SUBTYPE 1 COMPLEXED WITH GLUTAMATE
Descriptor:METABOTROPIC GLUTAMATE RECEPTOR SUBTYPE 1, N-ACETYL-D-GLUCOSAMINE, MAGNESIUM ION, ...
Authors:Kunishima, N., Shimada, Y., Jingami, H., Morikawa, K.
Deposit date:2000-04-26
Release date:2000-12-18
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structural basis of glutamate recognition by a dimeric metabotropic glutamate receptor.
Nature, 407, 2000
1EWT
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CRYSTAL STRUCTURE OF METABOTROPIC GLUTAMATE RECEPTOR SUBTYPE 1 LIGAND FREE FORM I
Descriptor:METABOTROPIC GLUTAMATE RECEPTOR SUBTYPE 1, SULFATE ION, N-ACETYL-D-GLUCOSAMINE
Authors:Kunishima, N., Shimada, Y., Tsuji, Y., Jingami, H., Morikawa, K.
Deposit date:2000-04-27
Release date:2000-12-18
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (3.7 Å)
Cite:Structural basis of glutamate recognition by a dimeric metabotropic glutamate receptor.
Nature, 407, 2000
1EWV
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CRYSTAL STRUCTURE OF METABOTROPIC GLUTAMATE RECEPTOR SUBTYPE 1 LIGAND FREE FORM II
Descriptor:METABOTROPIC GLUTAMATE RECEPTOR SUBTYPE 1
Authors:Kunishima, N., Shimada, Y., Tsuji, Y., Jingami, H., Morikawa, K.
Deposit date:2000-04-27
Release date:2000-12-18
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (4 Å)
Cite:Structural basis of glutamate recognition by a dimeric metabotropic glutamate receptor.
Nature, 407, 2000
1J1Y
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CRYSTAL STRUCTURE OF PAAI FROM THERMUS THERMOPHILUS HB8
Descriptor:PaaI protein, CHLORIDE ION, MAGNESIUM ION
Authors:Kunishima, N., Sugahara, M., Kuramitsu, S., Yokoyama, S., Miyano, M., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2002-12-24
Release date:2004-02-17
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:A Novel Induced-fit Reaction Mechanism of Asymmetric Hot Dog Thioesterase PaaI
J.Mol.Biol., 352, 2005
1J33
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CRYSTAL STRUCTURE OF COBT FROM THERMUS THERMOPHILUS HB8
Descriptor:CobT
Authors:Kunishima, N., Asada, Y., Miyano, M., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2003-01-17
Release date:2003-02-04
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal Structure of CobT from Thermus thermophilus HB8
To be Published
1UAY
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CRYSTAL STRUCTURE OF TYPE II 3-HYDROXYACYL-COA DEHYDROGENASE FROM THERMUS THERMOPHILUS HB8
Descriptor:Type II 3-hydroxyacyl-CoA dehydrogenase, ADENOSINE
Authors:Kunishima, N., Asada, Y., Yokoyama, S., Kuramitsu, S., Miyano, M., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2003-03-25
Release date:2003-04-15
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Crystal Structure of Type II 3-Hydroxyacyl-CoA Dehydrogenase from Thermus thermophilus HB8
To be Published
1V8H
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CRYSTAL STRUCTURE OF TT0351 PROTEIN FROM THERMUS THERMOPHILUS HB8
Descriptor:sulfur oxidation protein SoxZ
Authors:Kunishima, N., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2004-01-09
Release date:2005-01-18
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.2 Å)
Cite:Crystal structure of SoxZ protein from Thermus thermophilus HB8
To be Published
1VCE
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CRYSTAL STRUCTURE OF PROJECT ID PH0725 FROM PYROCOCCUS HORIKOSHII OT3
Descriptor:diphthine synthase, S-ADENOSYL-L-HOMOCYSTEINE
Authors:Kunishima, N., Shimizu, K., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2004-03-07
Release date:2005-03-29
Last modified:2011-11-16
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal structure of diphthine synthase from Pyrococcus horikoshii OT3
To be Published
1WLU
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CRYSTAL STRUCTURE OF TT0310 PROTEIN FROM THERMUS THERMOPHILUS HB8
Descriptor:phenylacetic acid degradation protein PaaI, CHLORIDE ION, GLYCEROL
Authors:Kunishima, N., Sugahara, M., Miyano, M., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2004-06-29
Release date:2005-07-05
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:A Novel Induced-fit Reaction Mechanism of Asymmetric Hot Dog Thioesterase PaaI
J.Mol.Biol., 352, 2005
1WLV
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CRYSTAL STRUCTURE OF TT0310 PROTEIN FROM THERMUS THERMOPHILUS HB8
Descriptor:phenylacetic acid degradation protein PaaI, CHLORIDE ION, COENZYME A, ...
Authors:Kunishima, N., Sugahara, M., Miyano, M., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2004-06-29
Release date:2005-07-05
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:A Novel Induced-fit Reaction Mechanism of Asymmetric Hot Dog Thioesterase PaaI
J.Mol.Biol., 352, 2005
1WN3
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CRYSTAL STRUCTURE OF TT0310 PROTEIN FROM THERMUS THERMOPHILUS HB8
Descriptor:phenylacetic acid degradation protein PaaI, CHLORIDE ION, HEXANOYL-COENZYME A, ...
Authors:Kunishima, N., Sugahara, M., Miyano, M., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2004-07-27
Release date:2005-07-05
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:A Novel Induced-fit Reaction Mechanism of Asymmetric Hot Dog Thioesterase PaaI
J.Mol.Biol., 352, 2005
3VNG
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CRYSTAL STRUCTURE OF KEAP1 IN COMPLEX WITH SYNTHETIC SMALL MOLECULAR BASED ON A CO-CRYSTALLIZATION
Descriptor:Kelch-like ECH-associated protein 1, 2-(3-((3-(5-(furan-2-yl)-1,3,4-oxadiazol-2-yl)ureido)methyl)phenoxy)acetic acid
Authors:Kunishima, N., Tanaka, T., Satoh, M., Saburi, H.
Deposit date:2012-01-12
Release date:2013-01-16
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal Structure of Keap1 in Complex with Synthetic Small Molecular based on a co-crystallization
To be Published
3VNH
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CRYSTAL STRUCTURE OF KEAP1 SOAKED WITH SYNTHETIC SMALL MOLECULAR
Descriptor:Kelch-like ECH-associated protein 1, 2-(3-((3-(5-(furan-2-yl)-1,3,4-oxadiazol-2-yl)ureido)methyl)phenoxy)acetic acid
Authors:Kunishima, N., Tanaka, T., Satoh, M., Saburi, H.
Deposit date:2012-01-12
Release date:2013-01-16
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal Structure of Keap1 Soaked with Synthetic Small Molecular
To be Published
1GZB
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PEROXIDASE
Descriptor:PEROXIDASE, N-ACETYL-D-GLUCOSAMINE, CALCIUM ION, ...
Authors:Fukuyama, K., Kunishima, N., Amada, F.
Deposit date:1996-11-13
Release date:1997-03-12
Last modified:2017-11-29
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Pentacoordination of the heme iron of Arthromyces ramosus peroxidase shown by a 1.8 A resolution crystallographic study at pH 4.5.
FEBS Lett., 378, 1996
1WM6
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CRYSTAL STRUCTURE OF TT0310 PROTEIN FROM THERMUS THERMOPHILUS HB8
Descriptor:phenylacetic acid degradation protein PaaI, CHLORIDE ION
Authors:Sugahara, M., Kunishima, N., Miyano, M., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2004-07-04
Release date:2005-07-05
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:A Novel Induced-fit Reaction Mechanism of Asymmetric Hot Dog Thioesterase PaaI
J.Mol.Biol., 352, 2005
1WNG
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STRUCTURAL STUDY OF PROJECT ID PH0725 FROM PYROCOCCUS HORIKOSHII OT3
Descriptor:Probable diphthine synthase, SULFATE ION, S-ADENOSYL-L-HOMOCYSTEINE
Authors:Kunishima, N., Shimizu, K., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2004-08-02
Release date:2005-07-19
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structures of two archaeal diphthine synthases: insights into the post-translational modification of elongation factor 2.
Acta Crystallogr.,Sect.D, 64, 2008
5WR2
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THERMOLYSIN, SFX LIGANDED FORM WITH OIL-BASED CARRIER
Descriptor:Thermolysin, N-[(benzyloxy)carbonyl]-L-aspartic acid, ZINC ION, ...
Authors:Kunishima, N., Naitow, H., Matsuura, Y.
Deposit date:2016-11-29
Release date:2017-08-16
Last modified:2018-01-24
Method:X-RAY DIFFRACTION (2 Å)
Cite:Protein-ligand complex structure from serial femtosecond crystallography using soaked thermolysin microcrystals and comparison with structures from synchrotron radiation
Acta Crystallogr D Struct Biol, 73, 2017
5WR3
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THERMOLYSIN, SFX LIGANDED FORM WITH WATER-BASED CARRIER
Descriptor:Thermolysin, N-[(benzyloxy)carbonyl]-L-aspartic acid, ZINC ION, ...
Authors:Kunishima, N., Naitow, H., Matsuura, Y.
Deposit date:2016-11-29
Release date:2017-08-16
Last modified:2018-01-24
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Protein-ligand complex structure from serial femtosecond crystallography using soaked thermolysin microcrystals and comparison with structures from synchrotron radiation
Acta Crystallogr D Struct Biol, 73, 2017
5WR4
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THERMOLYSIN, SFX UNLIGANDED FORM WITH OIL-BASED CARRIER
Descriptor:Thermolysin, ZINC ION, CALCIUM ION
Authors:Kunishima, N., Naitow, H., Matsuura, Y.
Deposit date:2016-11-29
Release date:2017-08-16
Last modified:2018-01-24
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Protein-ligand complex structure from serial femtosecond crystallography using soaked thermolysin microcrystals and comparison with structures from synchrotron radiation
Acta Crystallogr D Struct Biol, 73, 2017
5WR5
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THERMOLYSIN, LIGANDED FORM WITH CRYO CONDITION 1
Descriptor:Thermolysin, N-[(benzyloxy)carbonyl]-L-aspartic acid, ZINC ION, ...
Authors:Kunishima, N., Naitow, H., Matsuura, Y.
Deposit date:2016-11-29
Release date:2017-08-16
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Protein-ligand complex structure from serial femtosecond crystallography using soaked thermolysin microcrystals and comparison with structures from synchrotron radiation
Acta Crystallogr D Struct Biol, 73, 2017
5WR6
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THERMOLYSIN, LIGANDED FORM WITH CRYO CONDITION 2
Descriptor:Thermolysin, N-[(benzyloxy)carbonyl]-L-aspartic acid, ZINC ION, ...
Authors:Kunishima, N., Naitow, H., Matsuura, Y.
Deposit date:2016-11-29
Release date:2017-08-16
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Protein-ligand complex structure from serial femtosecond crystallography using soaked thermolysin microcrystals and comparison with structures from synchrotron radiation
Acta Crystallogr D Struct Biol, 73, 2017
5ZGO
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CRYSTAL STRUCTURE OF APRT2 FROM THERMUS THERMOPHILUS HB8
Descriptor:Adenine phosphoribosyltransferase
Authors:Kunishima, N., Naitow, H., Matsuura, Y.
Deposit date:2018-03-09
Release date:2019-03-06
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structural and functional characterization of thermostable biocatalysts for the synthesis of 6-aminopurine nucleoside-5'-monophospate analogues.
Bioresour. Technol., 276, 2019
1ARU
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CRYSTAL STRUCTURES OF CYANIDE-AND TRIIODIDE-BOUND FORMS OF ARTHROMYCES RAMOSUS PEROXIDASE AT DIFFERENT PH VALUES. PERTURBATIONS OF ACTIVE SITE RESIDUES AND THEIR IMPLICATION IN ENZYME CATALYSIS
Descriptor:PEROXIDASE, N-ACETYL-D-GLUCOSAMINE, CYANIDE ION, ...
Authors:Fukuyama, K., Kunishima, N., Amada, F.
Deposit date:1995-04-25
Release date:1996-01-29
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystal structures of cyanide- and triiodide-bound forms of Arthromyces ramosus peroxidase at different pH values. Perturbations of active site residues and their implication in enzyme catalysis.
J.Biol.Chem., 270, 1995
1ARV
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CRYSTAL STRUCTURES OF CYANIDE-AND TRIIODIDE-BOUND FORMS OF ARTHROMYCES RAMOSUS PEROXIDASE AT DIFFERENT PH VALUES. PERTURBATIONS OF ACTIVE SITE RESIDUES AND THEIR IMPLICATION IN ENZYME CATALYSIS
Descriptor:PEROXIDASE, N-ACETYL-D-GLUCOSAMINE, CYANIDE ION, ...
Authors:Fukuyama, K., Kunishima, N., Amada, F.
Deposit date:1995-04-25
Release date:1996-01-29
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystal structures of cyanide- and triiodide-bound forms of Arthromyces ramosus peroxidase at different pH values. Perturbations of active site residues and their implication in enzyme catalysis.
J.Biol.Chem., 270, 1995