Author results

1WMJ
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SOLUTION STRUCTURE OF THIOREDOXIN TYPE H FROM ORYZA SATIVA
Descriptor:Thioredoxin H-type
Authors:Kumeta, H., Ogura, H., Akagi, K., Katoh, E., Inagaki, F.
Deposit date:2004-07-09
Release date:2005-10-25
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution structure of Thioredoxin type h from Oryza sativa
To be Published
2KWC
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THE NMR STRUCTURE OF THE AUTOPHAGY-RELATED PROTEIN ATG8
Descriptor:Autophagy-related protein 8
Authors:Kumeta, H., Watanabe, M., Nakatogawa, H., Yamaguchi, M., Ogura, K., Adachi, W., Fujioka, Y., Noda, N.N., Ohsumi, Y., Inagaki, F.
Deposit date:2010-04-05
Release date:2010-05-12
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:The NMR structure of the autophagy-related protein Atg8
J.Biomol.Nmr, 47, 2010
2M63
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THE PROTEASE-RESISTANT N-TERMINAL DOMAIN OF TIR-DOMAIN CONTAINING ADAPTOR MOLECULE-1, TICAM-1
Descriptor:TIR domain-containing adapter molecule 1
Authors:Kumeta, H., Enokizono, Y., Sakakibara, H., Ogura, K., Matsumoto, M., Seya, T., Inagaki, F.
Deposit date:2013-03-20
Release date:2014-03-05
Method:SOLUTION NMR
Cite:The N-terminal domain of TIR domain-containing adaptor molecule-1, TICAM-1
J.Biomol.Nmr, 2014
5XND
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SOLUTION STRUCTURE OF THE MAJOR FISH ALLERGEN PARVALBUMIN SCO J 1 DERIVED FROM THE PACIFIC MACKEREL
Descriptor:Parvalbumin beta, CALCIUM ION
Authors:Kumeta, H., Nakayama, H., Ogura, K.
Deposit date:2017-05-22
Release date:2017-12-27
Method:SOLUTION NMR
Cite:Solution structure of the major fish allergen parvalbumin Sco j 1 derived from the Pacific mackerel
Sci Rep, 7, 2017
1IY3
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SOLUTION STRUCTURE OF THE HUMAN LYSOZYME AT 4 DEGREE C
Descriptor:Lysozyme
Authors:Kumeta, H., Miura, A., Kobashigawa, Y., Miura, K., Oka, C., Nitta, K., Nemoto, N., Tsuda, S.
Deposit date:2002-07-15
Release date:2002-07-31
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Low-temperature-induced structural changes in human lysozyme elucidated by three-dimensional NMR spectroscopy
Biochemistry, 42, 2003
1IY4
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SOLUTION STRUCTURE OF THE HUMAN LYSOZYME AT 35 DEGREE C
Descriptor:Lysozyme
Authors:Kumeta, H., Miura, A., Kobashigawa, Y., Miura, K., Oka, C., Nitta, K., Nemoto, N., Tsuda, S.
Deposit date:2002-07-15
Release date:2002-07-31
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Low-temperature-induced structural changes in human lysozyme elucidated by three-dimensional NMR spectroscopy
Biochemistry, 42, 2003
1TH5
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SOLUTION STRUCTURE OF C-TERMINAL DOMAIN OF NIFU-LIKE PROTEIN FROM ORYZA SATIVA
Descriptor:NifU1
Authors:Kumeta, H., Ogura, K., Asayama, M., Katoh, S., Katoh, E., Inagaki, F.
Deposit date:2004-06-01
Release date:2005-09-27
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:The NMR structure of the domain II of a chloroplastic NifU-like protein OsNifU1A.
J.Biomol.Nmr, 38, 2007
2JPE
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FHA DOMAIN OF NIPP1
Descriptor:Nuclear inhibitor of protein phosphatase 1
Authors:Kumeta, H., Ogura, K., Fujioka, Y., Tanuma, N., Kikuchi, K., Inagaki, F.
Deposit date:2007-05-07
Release date:2007-05-15
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:The NMR structure of the NIPP1 FHA domain.
J.Biomol.Nmr, 40, 2008
2KSV
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THE NMR STRUCTURE OF PROTEIN-GLUTAMINASE FROM CHRYSEOBACTERIUM PROTEOLYTICUM
Descriptor:Protein-glutaminase
Authors:Kumeta, H., Miwa, N., Ogura, K., Kai, Y., Mizukoshi, T., Shimba, N., Suzuki, E., Inagaki, F.
Deposit date:2010-01-14
Release date:2010-02-16
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:The NMR structure of protein-glutaminase from Chryseobacterium proteolyticum.
J.Biomol.Nmr, 46, 2010
2LX2
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1H,13C,15N ASSIGNMENTS FOR AN ISOFORM OF THE TYPE III ANTIFREEZE PROTEIN FROM NOTCHED-FIN EELPOUT
Descriptor:Type III antifreeze protein nfeAFP11
Authors:Kumeta, H., Ogura, K., Nishimiya, Y., Miura, A., Inagaki, F., Tsuda, S.
Deposit date:2012-08-12
Release date:2013-07-24
Method:SOLUTION NMR
Cite:NMR structure note: a defective isoform and its activity-improved variant of a type III antifreeze protein from Zoarces elongates Kner
J.Biomol.Nmr, 55, 2013
2LX3
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1H,13C,15N ASSIGNMENTS FOR AN ISOFORM OF THE TYPE III ANTIFREEZE PROTEIN FROM NOTCHED-FIN EELPOUT
Descriptor:Type III antifreeze protein nfeAFP11
Authors:Kumeta, H., Ogura, K., Nishimiya, Y., Miura, A., Inagaki, F., Tsuda, S.
Deposit date:2012-08-12
Release date:2013-07-24
Method:SOLUTION NMR
Cite:NMR structure note: a defective isoform and its activity-improved variant of a type III antifreeze protein from Zoarces elongates Kner
J.Biomol.Nmr, 55, 2013
2LI5
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NMR STRUCTURE OF ATG8-ATG7C30 COMPLEX
Descriptor:Autophagy-related protein 8, Ubiquitin-like modifier-activating enzyme ATG7
Authors:Kumeta, H., Satoo, K., Noda, N.N., Fujioka, Y., Ogura, K., Nakatogawa, H., Ohsumi, Y., Inagaki, F.
Deposit date:2011-08-23
Release date:2011-11-16
Last modified:2012-03-28
Method:SOLUTION NMR
Cite:Structural basis of Atg8 activation by a homodimeric E1, Atg7.
Mol.Cell, 44, 2011
2KBT
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ATTACHMENT OF AN NMR-INVISIBLE SOLUBILITY ENHANCEMENT TAG (INSET) USING A SORTASE-MEDIATED PROTEIN LIGATION METHOD
Descriptor:chimera of Proto-oncogene vav, linker, Immunoglobulin G-binding protein G
Authors:Kumeta, H., Kobashigawa, Y., Ogura, K., Inagaki, F.
Deposit date:2008-12-07
Release date:2009-02-03
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Attachment of an NMR-invisible solubility enhancement tag using a sortase-mediated protein ligation method
J.Biomol.Nmr, 43, 2009
2KE4
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THE NMR STRUCTURE OF THE TC10 AND CDC42 INTERACTING DOMAIN OF CIP4
Descriptor:Cdc42-interacting protein 4
Authors:Kumeta, H., Kanoh, D., Kobashigawa, Y., Inagaki, F.
Deposit date:2009-01-22
Release date:2009-03-03
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:The NMR structure of the TC10- and Cdc42-interacting domain of CIP4.
J.Biomol.Nmr, 44, 2009
2LDR
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SOLUTION STRUCTURE OF HELIX-RING DOMAIN OF CBL-B IN THE TYR363 PHOSPHORYLATED FORM
Descriptor:E3 ubiquitin-protein ligase CBL-B, ZINC ION
Authors:Kumeta, H., Kobashigawa, Y., Inagaki, F.
Deposit date:2011-06-01
Release date:2011-12-14
Last modified:2013-07-10
Method:SOLUTION NMR
Cite:Autoinhibition and phosphorylation-induced activation mechanisms of human cancer and autoimmune disease-related E3 protein Cbl-b
Proc.Natl.Acad.Sci.USA, 108, 2011
4DVY
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CRYSTAL STRUCTURE OF THE HELICOBACTER PYLORI CAGA ONCOPROTEIN
Descriptor:Cytotoxicity-associated immunodominant antigen
Authors:Hayashi, T., Senda, M., Morohashi, H., Higashi, H., Horio, M., Kashiba, Y., Nagase, L., Sasaya, D., Shimizu, T., Venugopalan, N., Kumeta, H., Noda, N., Inagaki, F., Senda, T., Hatakeyama, M.
Deposit date:2012-02-23
Release date:2012-07-25
Last modified:2012-08-22
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:Tertiary Structure-Function Analysis Reveals the Pathogenic Signaling Potentiation Mechanism of Helicobacter pylori Oncogenic Effector CagA
Cell Host Microbe, 12, 2012
4DVZ
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CRYSTAL STRUCTURE OF THE HELICOBACTER PYLORI CAGA ONCOPROTEIN
Descriptor:Cytotoxicity-associated immunodominant antigen
Authors:Hayashi, T., Senda, M., Morohashi, H., Higashi, H., Horio, M., Kashiba, Y., Nagase, L., Sasaya, D., Shimizu, T., Venugopalan, N., Kumeta, H., Noda, N., Inagaki, F., Senda, T., Hatakeyama, M.
Deposit date:2012-02-23
Release date:2012-07-25
Last modified:2013-09-04
Method:X-RAY DIFFRACTION (3.19 Å)
Cite:Tertiary structure-function analysis reveals the pathogenic signaling potentiation mechanism of Helicobacter pylori oncogenic effector CagA
Cell Host Microbe, 12, 2012
2K6Q
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LC3 P62 COMPLEX STRUCTURE
Descriptor:Microtubule-associated proteins 1A/1B light chain 3B, p62_peptide from Sequestosome-1
Authors:Noda, N., Kumeta, H., Nakatogawa, H., Satoo, K., Adachi, W., Ishii, J., Fujioka, Y., Ohsumi, Y., Inagaki, F.
Deposit date:2008-07-17
Release date:2008-09-02
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Structural basis of target recognition by ATG8/LC3 during selective autophagy
To be Published
2LPU
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SOLUTION STRUCTURES OF KMATG10
Descriptor:KmAtg10
Authors:Yamaguchi, M., Noda, N.N., Yamamoto, H., Shima, T., Kumeta, H., Kobashigawa, Y., Akada, R., Ohsumi, Y., Inagaki, F.
Deposit date:2012-02-19
Release date:2012-08-01
Method:SOLUTION NMR
Cite:Structural insights into atg10-mediated formation of the autophagy-essential atg12-atg5 conjugate
Structure, 20, 2012
3VQI
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CRYSTAL STRUCTURE OF KLUYVEROMYCES MARXIANUS ATG5
Descriptor:Atg5, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, SULFATE ION
Authors:Yamaguchi, M., Noda, N.N., Yamamoto, H., Shima, T., Kumeta, H., Kobashigawa, Y., Akada, R., Ohsumi, Y., Inagaki, F.
Deposit date:2012-03-24
Release date:2012-08-01
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structural insights into atg10-mediated formation of the autophagy-essential atg12-atg5 conjugate
Structure, 20, 2012
5ZR0
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SOLUTION STRUCTURE OF PEPTIDYL-PROLYL CIS/TRANS ISOMERASE DOMAIN OF TRIGGER FACTOR IN COMPLEX WITH MBP
Descriptor:Maltose-binding periplasmic protein,Trigger factor
Authors:Kawagoe, S., Nakagawa, H., Kumeta, H., Ishimori, K., Saio, T.
Deposit date:2018-04-21
Release date:2018-08-22
Last modified:2018-10-10
Method:SOLUTION NMR
Cite:Structural insight into prolinecis/transisomerization of unfolded proteins catalyzed by the trigger factor chaperone.
J. Biol. Chem., 293, 2018
2KFJ
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SOLUTION STRUCTURE OF THE LOOP DELETION MUTANT OF PB1 DOMAIN OF CDC24P
Descriptor:Cell division control protein 24
Authors:Ogura, K., Tandai, T., Yoshinaga, S., Kobashigawa, Y., Kumeta, H., Inagaki, F.
Deposit date:2009-02-22
Release date:2009-10-06
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:NMR structure of the heterodimer of Bem1 and Cdc24 PB1 domains from Saccharomyces cerevisiae
J.Biochem., 146, 2009
2CZO
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SOLUTION STRUCTURE OF THE PX DOMAIN OF BEM1P
Descriptor:Bud emergence protein 1
Authors:Maeda, A., Ogura, K., Horiuchi, M., Kumeta, H., Fujioka, Y., Inagaki, F.
Deposit date:2005-07-14
Release date:2006-10-03
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution structure of the PX domain of Bem1p
To be Published
2JNV
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SOLUTION STRUCTURE OF C-TERMINAL DOMAIN OF NIFU-LIKE PROTEIN FROM ORYZA SATIVA
Descriptor:NifU-like protein 1, chloroplast
Authors:Saio, T., Ogura, K., Kumeta, H., Yokochi, M., Katoh, S., Katoh, E., Inagaki, F., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-02-06
Release date:2007-12-18
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:The cooperative role of OsCnfU-1A domain I and domain II in the iron sulphur cluster transfer process as revealed by NMR
J.Biochem.(Tokyo), 142, 2007
2KTR
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NMR STRUCTURE OF P62 PB1 DIMER DETERMINED BASED ON PCS
Descriptor:Sequestosome-1, TERBIUM(III) ION
Authors:Saio, T., Yokochi, M., Kumeta, H., Inagaki, F.
Deposit date:2010-02-05
Release date:2010-04-07
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:PCS-based structure determination of protein-protein complexes
J.Biomol.Nmr, 46, 2010
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