Author results

6JMI
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CRYSTAL STRUCTURE OF M.TUBERCULOSIS RV0081
Descriptor:Uncharacterized HTH-type transcriptional regulator Rv0081, SULFATE ION
Authors:Kumar, A., Phulera, S., Mande, C.S.
Deposit date:2019-03-11
Release date:2019-04-10
Last modified:2019-05-22
Method:X-RAY DIFFRACTION (2.896 Å)
Cite:Structural basis of hypoxic gene regulation by the Rv0081 transcription factor of Mycobacterium tuberculosis.
Febs Lett., 593, 2019
6I1D
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STRUCTURE OF THE YSH1-MPE1 NUCLEASE COMPLEX FROM S.CEREVISIAE
Descriptor:Endoribonuclease YSH1, Protein MPE1, ZINC ION, ...
Authors:Hill, C.H., Boreikaite, V., Kumar, A., Casanal, A., Kubik, P., Degliesposti, G., Maslen, S., Mariani, A., von Loeffelholz, O., Girbig, M., Skehel, M., Passmore, L.A.
Deposit date:2018-10-28
Release date:2019-02-13
Last modified:2019-04-03
Method:X-RAY DIFFRACTION (2.28 Å)
Cite:Activation of the Endonuclease that Defines mRNA 3' Ends Requires Incorporation into an 8-Subunit Core Cleavage and Polyadenylation Factor Complex.
Mol.Cell, 73, 2019
6HTN
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STRUCTURE OF A FUCOSE LECTIN FROM KORDIA ZHANGZHOUENSIS IN COMPLEX WITH METHYL-FUCOSIDE
Descriptor:Fucose-binding lectin, ALPHA-L-METHYL-FUCOSE, (4R)-2-METHYLPENTANE-2,4-DIOL, ...
Authors:Varrot, A.
Deposit date:2018-10-04
Release date:2019-01-23
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:The different ways to build b-propeller lectins: search in genomes using a structure-based database
To Be Published
5Z40
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CRYSTAL STRUCTURE OF PYRROLIDONE CARBOXYLATE PEPTIDASE I FROM DEIONOCOCCUS RADIODURANS R1
Descriptor:Pyrrolidone-carboxylate peptidase
Authors:Agrawal, R., Kumar, A., Makde, R.D.
Deposit date:2018-01-09
Release date:2019-01-16
Method:X-RAY DIFFRACTION (1.837 Å)
Cite:Crystal structures of pyrrolidone carboxylate peptidase I from Deionococcus radiodurans reveal the mechanism of L-pyroglutamate recognition
To Be Published
5Z47
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CRYSTAL STRUCTURE OF PYRROLIDONE CARBOXYLATE PEPTIDASE I WITH DISORDERED LOOP A FROM DEINOCOCCUS RADIODURANS R1
Descriptor:Pyrrolidone-carboxylate peptidase, DIMETHYL SULFOXIDE
Authors:Agrawal, R., Kumar, A., Kumar, A., Makde, R.D.
Deposit date:2018-01-10
Release date:2019-01-16
Last modified:2019-04-24
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystal structures of pyrrolidone-carboxylate peptidase I from Deinococcus radiodurans reveal the mechanism of L-pyroglutamate recognition.
Acta Crystallogr D Struct Biol, 75, 2019
5Z48
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CRYSTAL STRUCTURE OF PYRROLIDONE CARBOXYLATE PEPTIDASE I FROM DEINOCOCCUS RADIODURANS R1 BOUND TO PYROGLUTAMATE
Descriptor:Pyrrolidone-carboxylate peptidase, SODIUM ION, DIMETHYL SULFOXIDE, ...
Authors:Agrawal, R., Kumar, A., Kumar, A., Makde, R.D.
Deposit date:2018-01-10
Release date:2019-01-16
Last modified:2019-04-17
Method:X-RAY DIFFRACTION (1.551 Å)
Cite:Crystal structures of pyrrolidone-carboxylate peptidase I from Deinococcus radiodurans reveal the mechanism of L-pyroglutamate recognition.
Acta Crystallogr D Struct Biol, 75, 2019
6A9T
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CRYSTAL STRUCTURE OF ICP55 FROM SACCHAROMYCES CEREVISIAE (N-TERMINAL 58 RESIDUES DELETION)
Descriptor:Intermediate cleaving peptidase 55, MANGANESE (II) ION, GLYCINE, ...
Authors:Singh, R., Kumar, A., Goyal, V.D., Makde, R.D.
Deposit date:2018-07-16
Release date:2019-01-16
Last modified:2019-03-13
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Crystal structures and biochemical analyses of intermediate cleavage peptidase: role of dynamics in enzymatic function.
FEBS Lett., 593, 2019
6A9U
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CRYSTAL STRCTURE OF ICP55 FROM SACCHAROMYCES CEREVISIAE BOUND TO APSTATIN INHIBITOR
Descriptor:Intermediate cleaving peptidase 55, apstatin, MANGANESE (II) ION
Authors:Singh, R., Kumar, A., Goyal, V.D., Makde, R.D.
Deposit date:2018-07-16
Release date:2019-01-16
Last modified:2019-03-13
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Crystal structures and biochemical analyses of intermediate cleavage peptidase: role of dynamics in enzymatic function.
FEBS Lett., 593, 2019
6A9V
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CRYSTAL STRUCTURE OF ICP55 FROM SACCHAROMYCES CEREVISIAE (N-TERMINAL 42 RESIDUES DELETION)
Descriptor:Intermediate cleaving peptidase 55, MANGANESE (II) ION, TRIETHYLENE GLYCOL, ...
Authors:Singh, R., Kumar, A., Goyal, V.D., Makde, R.D.
Deposit date:2018-07-16
Release date:2019-01-16
Last modified:2019-03-13
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Crystal structures and biochemical analyses of intermediate cleavage peptidase: role of dynamics in enzymatic function.
FEBS Lett., 593, 2019
6N13
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UBCH7-UB COMPLEX WITH R0RBR PARKIN AND PHOSPHOUBIQUITIN
Descriptor:E3 ubiquitin-protein ligase parkin, ubiquitin, Ubiquitin-conjugating enzyme E2 L3, ...
Authors:Condos, T.E.C., Dunkerley, K.M., Freeman, E.A., Barber, K.R., Aguirre, J.D., Chaugule, V.K., Xiao, Y., Konermann, L., Walden, H., Shaw, G.S.
Deposit date:2018-11-08
Release date:2018-11-28
Last modified:2018-12-12
Method:SOLUTION NMR
Cite:Synergistic recruitment of UbcH7~Ub and phosphorylated Ubl domain triggers parkin activation.
EMBO J., 37, 2018
6IDN
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CRYSTAL STRUCTURE OF ICCHI CHITINASE FROM IPOMOEA CARNEA
Descriptor:ICChI, a glycosylated chitinase, N-ACETYL-D-GLUCOSAMINE, ...
Authors:Kumar, S., Kumar, A., Patel, A.K.
Deposit date:2018-09-10
Release date:2018-11-21
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Crystal structure of ICChI chitinase from ipomoea carnea
To Be Published
5YZM
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CRYSTAL STRUCTURE OF S9 PEPTIDASE (INACTIVE FORM) FROM DEINOCOCCUS RADIODURANS R1
Descriptor:Acyl-peptide hydrolase, putative, ACETATE ION
Authors:Yadav, P., Jamdar, S.N., Kumar, A., Ghosh, B., Makde, R.D.
Deposit date:2017-12-15
Release date:2018-11-14
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structure of S9C peptidase (S154A) mutant from Deinococcus radiodurans R1
J.Biol.Chem., 2018
5YZN
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CRYSTAL STRUCTURE OF S9 PEPTIDASE (ACTIVE FORM) FROM DEINOCOCCUS RADIODURANS R1
Descriptor:Acyl-peptide hydrolase, putative
Authors:Yadav, P., Jamdar, S.N., Kumar, A., Ghosh, B., Makde, R.D.
Deposit date:2017-12-15
Release date:2018-11-14
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structure of S9C peptidase (S154A) mutant from Deinococcus radiodurans R1
J.Biol.Chem., 2018
5YZO
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CRYSTAL STRUCTURE OF S9 PEPTIDASE MUTANT (S514A) FROM DEINOCOCCUS RADIODURANS R1
Descriptor:Acyl-peptide hydrolase, putative, DIMETHYL SULFOXIDE, ...
Authors:Yadav, P., Jamdar, S.N., Kumar, A., Ghosh, B., Makde, R.D.
Deposit date:2017-12-15
Release date:2018-11-14
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystal structure of S9C peptidase (S154A) mutant from Deinococcus radiodurans R1
J.Biol.Chem., 2018
6IGP
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CRYSTAL STRUCTURE OF S9 PEPTIDASE (INACTIVE STATE)FROM DEINOCOCCUS RADIODURANS R1 IN P212121
Descriptor:Acyl-peptide hydrolase, putative, GLYCEROL
Authors:Yadav, P., Goyal, V.D., Kumar, A., Makde, R.D.
Deposit date:2018-09-25
Release date:2018-11-14
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Crystal structure of inactive state of S9 peptidase from Deinococcus radiodurans R1 in Tris-Cl condition (condition-2)
J.Biol.Chem., 2018
6IGQ
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CRYSTAL STRUCTURE OF INACTIVE STATE OF S9 PEPTIDASE FROM DEINOCOCCUS RADIODURANS R1 (PMSF TREATED)
Descriptor:Acyl-peptide hydrolase, putative, GLYCEROL, ...
Authors:Yadav, P., Goyal, V.D., Kumar, A., Makde, R.D.
Deposit date:2018-09-25
Release date:2018-11-14
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structure of inactive state of S9 peptidase from Deinococcus radiodurans R1 in ammonium sulphate condition (condition 3)
J.Biol.Chem., 2018
6IGR
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CRYSTAL STRUCTURE OF S9 PEPTIDASE (S514A MUTANT IN INACTIVE STATE) FROM DEINOCOCCUS RADIODURANS R1
Descriptor:Acyl-peptide hydrolase, putative, GLYCEROL
Authors:Yadav, P., Gaur, N.K., Goyal, V.D., Kumar, A., Makde, R.D.
Deposit date:2018-09-25
Release date:2018-11-14
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Crystal structure of S9 peptidase (S514A mutant in inactive state) from Deinococcus radiodurans R1
to be published
6IKG
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CRYSTAL STRUCTURE OF SUBSTRATE-BOUND S9 PEPTIDASE (S514A MUTANT) FROM DEINOCOCCUS RADIODURANS
Descriptor:Acyl-peptide hydrolase, putative, MET-ALA-ALA, ...
Authors:Yadav, P., Kumar, A., Goyal, V.D., Makde, R.D.
Deposit date:2018-10-16
Release date:2018-11-14
Last modified:2019-01-16
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Carboxypeptidase in prolyl oligopeptidase family: Unique enzyme activation and substrate-screening mechanisms
J. Biol. Chem., 294, 2019
6A4S
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CRYSTAL STRUCTURE OF PEPTIDASE E WITH ORDERED ACTIVE SITE LOOP FROM SALMONELLA ENTERICA
Descriptor:Peptidase E
Authors:Yadav, P., Chandravanshi, K., Goyal, V.D., Singh, R., Kumar, A., Gokhale, S.M., Makde, R.D.
Deposit date:2018-06-20
Release date:2018-10-31
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structure of Asp-bound peptidase E from Salmonella enterica: Active site at dimer interface illuminates Asp recognition.
FEBS Lett., 592, 2018
6A4R
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CRYSTAL STRUCTURE OF ASPARTATE BOUND PEPTIDASE E FROM SALMONELLA ENTERICA
Descriptor:Peptidase E, ASPARTIC ACID
Authors:Yadav, P., Chandravanshi, K., Goyal, V.D., Singh, R., Kumar, A., Gokhale, S.M., Makde, R.D.
Deposit date:2018-06-20
Release date:2018-10-24
Method:X-RAY DIFFRACTION (1.828 Å)
Cite:Structure of Asp-bound peptidase E from Salmonella enterica: Active site at dimer interface illuminates Asp recognition.
FEBS Lett., 592, 2018
6HUE
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PARKINS65N
Descriptor:E3 ubiquitin-protein ligase parkin, ZINC ION, SULFATE ION, ...
Authors:McWilliams, T.G., Barini, E., Pohjolan-Pirhonen, R., Brooks, S.P., Singh, F., Burel, S., Balk, K., Kumar, A., Montava-Garriga, L., Prescott, A.R., Hassoun, S.M., Mouton-Liger, F., Ball, G., Hills, R., Knebel, A., Ulusoy, A., Di Monte, D.A., Tamjar, J., Antico, O., Fears, K., Smith, L., Brambilla, R., Palin, E., Valori, M., Eerola-Rautio, J., Tienari, P., Corti, O., Dunnett, S.B., Ganley, I.G., Suomalainen, A., Muqit, M.M.K.
Deposit date:2018-10-07
Release date:2018-10-17
Last modified:2018-11-21
Method:X-RAY DIFFRACTION (2.85 Å)
Cite:Phosphorylation of Parkin at serine 65 is essential for its activationin vivo.
Open Biol, 8, 2018
6A8M
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N-TERMINAL DOMAIN OF FACT COMPLEX SUBUNIT SPT16 FROM EREMOTHECIUM GOSSYPII (ASHBYA GOSSYPII)
Descriptor:FACT complex subunit SPT16
Authors:Gaur, N.K., Are, V.N., Durani, V., Ghosh, B., Kumar, A., Kulkarni, K., Makde, R.D.
Deposit date:2018-07-09
Release date:2018-08-15
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:N-terminal domain of FACT complex subunit SPT16 from Eremothecium gossypii (Ashbya gossypii)
To Be Published
5XI1
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STRUCTURAL INSIGHT OF FLAVONOIDS BINDING TO CAG REPEAT RNA THAT CAUSES HUNTINGTON'S DISEASE (HD) AND SPINOCEREBELLAR ATAXIA (SCAS)
Descriptor:RNA (5'-R(P*CP*CP*GP*CP*AP*GP*CP*GP*G)-3'), 3,5,7-TRIHYDROXY-2-(3,4,5-TRIHYDROXYPHENYL)-4H-CHROMEN-4-ONE
Authors:Tawani, A., Mishra, S.K., Khan, E., Kumar, A.
Deposit date:2017-04-25
Release date:2018-08-08
Method:SOLUTION NMR
Cite:Myricetin Reduces Toxic Level of CAG Repeats RNA in Huntington's Disease (HD) and Spino Cerebellar Ataxia (SCAs).
ACS Chem. Biol., 13, 2018
5XYL
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SOLUTION STRUCTURE OF SKP1 FROM HOMO SAPIENS
Descriptor:S-phase kinase-associated protein 1
Authors:Shukla, V.K., Kachariya, N.N., Bhattacharya, A., Dantu, S.C., Kumar, A.
Deposit date:2017-07-09
Release date:2018-07-11
Method:SOLUTION NMR
Cite:Structural and dynamics insight of the recognition of Fbox protein by Skp1
To Be Published
6B9B
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CRYSTAL STRUCTURE OF THE CATALASE-PEROXIDASE FROM B. PSEUDOMALLEI WITH MALTOSE BOUND
Descriptor:Catalase-peroxidase, PROTOPORPHYRIN IX CONTAINING FE, SODIUM ION, ...
Authors:Loewen, P.C.
Deposit date:2017-10-10
Release date:2018-07-04
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:KatG-Mediated Oxidation Leading to Reduced Susceptibility of Bacteria to Kanamycin.
ACS Omega, 3, 2018