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1UAC
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BU of 1uac by Molmil
Crystal Structure of HYHEL-10 FV MUTANT SFSF Complexed with TURKEY WHITE LYSOZYME
Descriptor: Ig VH,anti-lysozyme, Lysozyme C, lysozyme binding Ig kappa chain V23-J2 region
Authors:Kumagai, I, Nishimiya, Y, Kondo, H, Tsumoto, K.
Deposit date:2003-03-08
Release date:2004-03-23
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structural consequences of target epitope-directed functional alteration of an antibody. The case of anti-hen lysozyme antibody, HyHEL-10
J.BIOL.CHEM., 278, 2003
1UA6
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BU of 1ua6 by Molmil
Crystal structure of HYHEL-10 FV MUTANT SFSF complexed with HEN EGG WHITE LYSOZYME complex
Descriptor: Ig VH,anti-lysozyme, Lysozyme C, lysozyme binding Ig kappa chain V23-J2 region
Authors:Kumagai, I, Nishimiya, Y, Kondo, H, Tsumoto, K.
Deposit date:2003-02-28
Release date:2004-03-09
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structural consequences of target epitope-directed functional alteration of an antibody. The case of anti-hen lysozyme antibody, HyHEL-10
J.Biol.Chem., 278, 2003
1C08
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BU of 1c08 by Molmil
CRYSTAL STRUCTURE OF HYHEL-10 FV-HEN LYSOZYME COMPLEX
Descriptor: ANTI-HEN EGG WHITE LYSOZYME ANTIBODY (HYHEL-10), LYSOZYME
Authors:Shiroishi, M, Kondo, H, Matsushima, M, Tsumoto, K, Kumagai, I.
Deposit date:1999-07-15
Release date:2000-07-19
Last modified:2023-05-31
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structure of anti-Hen egg white lysozyme antibody (HyHEL-10) Fv-antigen complex. Local structural changes in the protein antigen and water-mediated interactions of Fv-antigen and light chain-heavy chain interfaces.
J.Biol.Chem., 274, 1999
1FKQ
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BU of 1fkq by Molmil
RECOMBINANT GOAT ALPHA-LACTALBUMIN T29V
Descriptor: ALPHA-LACTALBUMIN, CALCIUM ION
Authors:Horii, K, Matsushima, M, Tsumoto, K, Kumagai, I.
Deposit date:2000-08-10
Release date:2001-02-14
Last modified:2021-11-03
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Contribution of Thr29 to the thermodynamic stability of goat alpha-lactalbumin as determined by experimental and theoretical approaches.
Proteins, 45, 2001
1FKV
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BU of 1fkv by Molmil
RECOMBINANT GOAT ALPHA-LACTALBUMIN T29I
Descriptor: ALPHA-LACTALBUMIN, CALCIUM ION
Authors:Horii, K, Matsushima, M, Tsumoto, K, Kumagai, I.
Deposit date:2000-08-10
Release date:2001-02-14
Last modified:2021-11-03
Method:X-RAY DIFFRACTION (2 Å)
Cite:Contribution of Thr29 to the thermodynamic stability of goat alpha-lactalbumin as determined by experimental and theoretical approaches.
Proteins, 45, 2001
5AYU
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BU of 5ayu by Molmil
Crystal structure of HyHEL-10 Fv
Descriptor: GLYCEROL, Ig VH,anti-lysozyme, lysozyme binding Ig kappa chain V23-J2 region
Authors:Nakanishi, T, Tsumoto, K, Yokota, A, Kondo, H, Kumagai, I.
Deposit date:2015-09-04
Release date:2016-09-07
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structure of HyHEL-10 Fv
To Be Published
1UD9
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BU of 1ud9 by Molmil
Crystal Structure of Proliferating Cell Nuclear Antigen (PCNA) Homolog From Sulfolobus tokodaii
Descriptor: DNA polymerase sliding clamp A, ZINC ION
Authors:Tanabe, E, Yasutake, Y, Tanaka, Y, Yao, M, Tsumoto, K, Kumagai, I, Tanaka, I.
Deposit date:2003-04-28
Release date:2004-06-15
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.68 Å)
Cite:Crystal Structure of Proliferating Cell Nuclear Antigen (PCNA) Homolog From Sulfolobus tokodaii
To be published
1UKU
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BU of 1uku by Molmil
Crystal Structure of Pyrococcus horikoshii CutA1 Complexed with Cu2+
Descriptor: COPPER (II) ION, periplasmic divalent cation tolerance protein CutA
Authors:Tanaka, Y, Yasutake, Y, Yao, M, Sakai, N, Tanaka, I, Tsumoto, K, Kumagai, I.
Deposit date:2003-09-01
Release date:2004-01-13
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Structural implications for heavy metal-induced reversible assembly and aggregation of a protein: the case of Pyrococcus horikoshii CutA.
Febs Lett., 556, 2004
1UMJ
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BU of 1umj by Molmil
Crystal structure of Pyrococcus horikoshii CutA in the presence of 3M guanidine hydrochloride
Descriptor: GUANIDINE, periplasmic divalent cation tolerance protein CutA
Authors:Tanaka, Y, Tsumoto, K, Yasutake, Y, Sakai, N, Yao, M, Tanaka, I, Kumagai, I.
Deposit date:2003-10-02
Release date:2004-10-05
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Structural evidence for guanidine-protein side chain interactions: crystal structure of CutA from Pyrococcus horikoshii in 3M guanidine hydrochloride
Biochem.Biophys.Res.Commun., 323, 2004
1VBF
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BU of 1vbf by Molmil
Crystal structure of protein L-isoaspartate O-methyltransferase homologue from Sulfolobus tokodaii
Descriptor: 231aa long hypothetical protein-L-isoaspartate O-methyltransferase
Authors:Tanaka, Y, Tsumoto, K, Yasutake, Y, Umetsu, M, Yao, M, Tanaka, I, Fukada, H, Kumagai, I.
Deposit date:2004-02-25
Release date:2004-08-10
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:How Oligomerization Contributes to the Thermostability of an Archaeon Protein: PROTEIN L-ISOASPARTYL-O-METHYLTRANSFERASE FROM SULFOLOBUS TOKODAII
J.Biol.Chem., 279, 2004
1VE0
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BU of 1ve0 by Molmil
Crystal structure of uncharacterized protein ST2072 from Sulfolobus tokodaii
Descriptor: SULFATE ION, ZINC ION, hypothetical protein (ST2072)
Authors:Tanabe, E, Horiike, Y, Tsumoto, K, Yasutake, Y, Yao, M, Tanaka, I, Kumagai, I.
Deposit date:2004-03-26
Release date:2005-03-22
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of the uncharacterized protein ST2072 from Sulfolobus tokodaii
To be Published
1WSC
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BU of 1wsc by Molmil
Crystal structure of ST0229, function unknown protein from Sulfolobus tokodaii
Descriptor: Hypothetical protein ST0229
Authors:Murayama, T, Tanaka, Y, Sasaki, T, Yasutake, Y, Yao, M, Tsumoto, K, Tanaka, I, Kumagai, I.
Deposit date:2004-11-05
Release date:2005-11-08
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.45 Å)
Cite:Crystal structure of ST0229, function unknown protein from Sulfolobus tokodaii
To be Published
1WOZ
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BU of 1woz by Molmil
Crystal structure of uncharacterized protein ST1454 from Sulfolobus tokodaii
Descriptor: (20S)-2,5,8,11,14,17-HEXAMETHYL-3,6,9,12,15,18-HEXAOXAHENICOSANE-1,20-DIOL, 177aa long conserved hypothetical protein (ST1454)
Authors:Sasaki, T, Tanaka, Y, Yasutake, Y, Yao, M, Tanaka, I, Tsumoto, K, Kumagai, I.
Deposit date:2004-08-27
Release date:2005-10-04
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.94 Å)
Cite:Crystal structure of the uncharacterized protein ST1454 from Sulfolobus tokodaii.
To be Published
1WVT
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BU of 1wvt by Molmil
Crystal structure of uncharacterized protein ST2180 from Sulfolobus tokodaii
Descriptor: hypothetical protein ST2180
Authors:Sasaki, T, Tanaka, Y, Yasutake, Y, Tsumoto, K, Tanaka, I, Kumagai, I.
Deposit date:2004-12-27
Release date:2006-01-03
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Molecular properties of two proteins homologous to PduO-type ATP:cob(I)alamin adenosyltransferase from Sulfolobus tokodaii
Proteins, 68, 2007
1HMK
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BU of 1hmk by Molmil
RECOMBINANT GOAT ALPHA-LACTALBUMIN
Descriptor: CALCIUM ION, PROTEIN (ALPHA-LACTALBUMIN)
Authors:Horii, K, Matsushima, M, Tsumoto, K, Kumagai, I.
Deposit date:1998-11-26
Release date:1999-11-26
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2 Å)
Cite:Effect of the extra n-terminal methionine residue on the stability and folding of recombinant alpha-lactalbumin expressed in Escherichia coli.
J.Mol.Biol., 285, 1999
1J08
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BU of 1j08 by Molmil
Crystal structure of glutaredoxin-like protein from Pyrococcus horikoshii
Descriptor: glutaredoxin-like protein
Authors:Tanaka, Y, Tanabe, E, Tsumoto, K, Kumagai, I, Yao, M, Tanaka, I.
Deposit date:2002-11-11
Release date:2003-05-11
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Protein disulfide isomerase from hyperthermophile as an additives of refolding of an immunoglobulin-folded protein
To be Published
1J2V
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BU of 1j2v by Molmil
Crystal Structure of CutA1 from Pyrococcus Horikoshii
Descriptor: 102AA long hypothetical periplasmic divalent cation tolerance protein CUTA
Authors:Tanaka, Y, Sakai, N, Yasutake, Y, Yao, M, Tsumoto, K, Kumagai, I, Tanaka, I.
Deposit date:2003-01-11
Release date:2004-01-13
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural implications for heavy metal-induced reversible assembly and aggregation of a protein: the case of Pyrococcus horikoshii CutA.
Febs Lett., 556, 2004
2D31
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BU of 2d31 by Molmil
Crystal structure of disulfide-linked HLA-G dimer
Descriptor: 9-mer peptide from Histone H2A, Beta-2-microglobulin, HLA class I histocompatibility antigen, ...
Authors:Shiroishi, M, Kuroki, K, Ose, T, Rasubala, L, Shiratori, I, Arase, H, Tsumoto, K, Kumagai, I, Kohda, D, Maenaka, K.
Deposit date:2005-09-23
Release date:2006-03-14
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Efficient Leukocyte Ig-like Receptor Signaling and Crystal Structure of Disulfide-linked HLA-G Dimer
J.Biol.Chem., 281, 2006
2DGD
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BU of 2dgd by Molmil
Crystal structure of ST0656, a function unknown protein from Sulfolobus tokodaii
Descriptor: 223aa long hypothetical arylmalonate decarboxylase, GLYCEROL
Authors:Tanaka, Y, Sasaki, T, Tanabe, E, Yao, M, Tanaka, I, Kumagai, I, Tsumoto, K.
Deposit date:2006-03-10
Release date:2007-03-13
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Crystal structure of ST0656, a function unknown protein from Sulfolobus tokodaii
To be Published
3A3Q
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BU of 3a3q by Molmil
Structure of N59D HEN EGG-WHITE LYSOZYME in complex with (GlcNAc)3
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Lysozyme C
Authors:Ose, T, Kuroki, K, Matsushima, M, Maenaka, K, Kumagai, I.
Deposit date:2009-06-16
Release date:2009-11-03
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2 Å)
Cite:Importance of the hydrogen bonding network including Asp52 for catalysis, as revealed by Asn59 mutant hen egg-white lysozymes
J.Biochem., 146, 2009
3A6B
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BU of 3a6b by Molmil
Crystal Structure of HyHEL-10 Fv mutant LN32D complexed with hen egg white lysozyme
Descriptor: IG VH, anti-lysozyme, Lysozyme C, ...
Authors:Yokota, A, Tsumoto, K, Shiroishi, M, Nakanishi, T, Kondo, H, Kumagai, I.
Deposit date:2009-08-28
Release date:2009-12-22
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Contribution of asparagine residues to the stabilization of a proteinaceous antigen-antibody complex, HyHEL-10-hen egg white lysozyme
J.Biol.Chem., 285, 2010
3A3R
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BU of 3a3r by Molmil
Structure of N59D HEN EGG-WHITE LYSOZYME
Descriptor: Lysozyme C
Authors:Ose, T, Kuroki, K, Matsushima, M, Maenaka, K, Kumagai, I.
Deposit date:2009-06-16
Release date:2009-11-03
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Importance of the hydrogen bonding network including Asp52 for catalysis, as revealed by Asn59 mutant hen egg-white lysozymes
J.Biochem., 146, 2009
1UFU
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BU of 1ufu by Molmil
Crystal structure of ligand binding domain of immunoglobulin-like transcript 2 (ILT2; LIR-1)
Descriptor: Immunoglobulin-like transcript 2
Authors:Shiroishi, M, Amano, K, Rasubala, L, Tsumoto, K, Kumagai, I, Kohda, D, Maenaka, K.
Deposit date:2003-06-10
Release date:2004-08-10
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (3 Å)
Cite:Kinetic and thermodynamic properties of the interaction between Immunoglobulin like transcript (ILT) and MHC class I
To be Published
1WT5
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BU of 1wt5 by Molmil
The Crystal Structure Of A Humanized Antibody Fv 528
Descriptor: ANTI EGFR ANTIBODY FV REGION
Authors:Makabe, K, Tsumoto, K, Asano, R, Kondo, H, Kumagai, I.
Deposit date:2004-11-16
Release date:2005-05-16
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Thermodynamic consequences of mutations in vernier zone residues of a humanized anti-human epidermal growth factor receptor murine antibody, 528
J.Biol.Chem., 283, 2008
1IC4
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BU of 1ic4 by Molmil
CRYSTAL STRUCTURE OF HYHEL-10 FV MUTANT(HD32A)-HEN LYSOZYME COMPLEX
Descriptor: IGG1 FAB CHAIN H, LYSOZYME BINDING IG KAPPA CHAIN, LYSOZYME C
Authors:Shiroishi, M, Yokota, A, Tsumoto, K, Kondo, H, Nishimiya, Y, Horii, K, Matsushima, M, Ogasahara, K, Yutani, K, Kumagai, I.
Deposit date:2001-03-30
Release date:2001-07-18
Last modified:2021-11-10
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structural evidence for entropic contribution of salt bridge formation to a protein antigen-antibody interaction: the case of hen lysozyme-HyHEL-10 Fv complex.
J.Biol.Chem., 276, 2001

 

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PDB entries from 2024-03-27

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