Author results

1UDX
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CRYSTAL STRUCTURE OF THE CONSERVED PROTEIN TT1381 FROM THERMUS THERMOPHILUS HB8
Descriptor:the GTP-binding protein Obg, ACETATE ION, (4S)-2-METHYL-2,4-PENTANEDIOL
Authors:Kukimoto-Niino, M., Shirouzu, M., Murayama, K., Inoue, M., Kuramitsu, S., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2003-05-07
Release date:2004-03-16
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.07 Å)
Cite:Crystal structure of the GTP-binding protein Obg from Thermus thermophilus HB8.
J.Mol.Biol., 337, 2004
1WEH
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CRYSTAL STRUCTURE OF THE CONSERVED HYPOTHETICAL PROTEIN TT1887 FROM THERMUS THERMOPHILUS HB8
Descriptor:Conserved hypothetical protein TT1887
Authors:Kukimoto-Niino, M., Murayama, K., Idaka, M., Terada, T., Shirouzu, M., Kuramitsu, S., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2004-05-25
Release date:2004-11-25
Last modified:2014-11-12
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structures of possible lysine decarboxylases from Thermus thermophilus HB8
PROTEIN SCI., 13, 2004
1WEK
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CRYSTAL STRUCTURE OF THE CONSERVED HYPOTHETICAL PROTEIN TT1465 FROM THERMUS THERMOPHILUS HB8
Descriptor:hypothetical protein TT1465, PHOSPHATE ION
Authors:Kukimoto-Niino, M., Murayama, K., Kato-Murayama, M., Terada, T., Shirouzu, M., Kuramitsu, S., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2004-05-25
Release date:2004-11-25
Last modified:2014-11-12
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal structures of possible lysine decarboxylases from Thermus thermophilus HB8
Protein Sci., 13, 2004
2E0A
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CRYSTAL STRUCTURE OF HUMAN PYRUVATE DEHYDROGENASE KINASE 4 IN COMPLEX WITH AMPPNP
Descriptor:Pyruvate dehydrogenase kinase isozyme 4, MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
Authors:Kukimoto-Niino, M., Tokmakov, A., Terada, T., Shiromizu, I., Kawamoto, M., Matsusue, T., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2006-10-03
Release date:2007-10-09
Last modified:2011-11-23
Method:X-RAY DIFFRACTION (1.86 Å)
Cite:Inhibitor-bound structures of human pyruvate dehydrogenase kinase 4.
Acta Crystallogr.,Sect.D, 67, 2011
2EF1
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CRYSTAL STRUCTURE OF THE EXTRACELLULAR DOMAIN OF HUMAN CD38
Descriptor:ADP-ribosyl cyclase 1, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID
Authors:Kukimoto-Niino, M., Nureki, O., Murayama, K., Shirouzu, M., Katada, T., Hara-Yokoyama, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-02-20
Release date:2007-02-27
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Crystal structure of the extracellular domain of human CD38
To be Published
2EG9
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CRYSTAL STRUCTURE OF THE TRUNCATED EXTRACELLULAR DOMAIN OF MOUSE CD38
Descriptor:ADP-ribosyl cyclase 1
Authors:Kukimoto-Niino, M., Mishima, C., Wakiyama, M., Terada, T., Shirouzu, M., Hara-Yokoyama, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-02-28
Release date:2008-03-11
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Crystal structure of the truncated extracellular domain of mouse CD38
To be Published
2ZET
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CRYSTAL STRUCTURE OF THE SMALL GTPASE RAB27B COMPLEXED WITH THE SLP HOMOLOGY DOMAIN OF SLAC2-A/MELANOPHILIN
Descriptor:Ras-related protein Rab-27B, Melanophilin, MAGNESIUM ION, ...
Authors:Kukimoto-Niino, M., Sakamoto, A., Kanno, E., Hanawa-Suetsugu, K., Terada, T., Shirouzu, M., Fukuda, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-12-17
Release date:2008-09-30
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (3 Å)
Cite:Structural basis for the exclusive specificity of Slac2-a/melanophilin for the Rab27 GTPases.
Structure, 16, 2008
1X3S
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CRYSTAL STRUCTURE OF HUMAN RAB18 IN COMPLEX WITH GPPNHP
Descriptor:Ras-related protein Rab-18, MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER
Authors:Kukimoto-Niino, M., Murayama, K., Chen, L., Liu, Z.J., Wang, B.C., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2005-05-10
Release date:2005-11-10
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.32 Å)
Cite:Crystal structure of human Rab18 in complex with Gppnhp
To be Published
2CXF
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RUN DOMAIN OF RAP2 INTERACTING PROTEIN X, CRYSTALLIZED IN C2 SPACE GROUP
Descriptor:rap2 interacting protein x
Authors:Kukimoto-Niino, M., Murayama, K., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2005-06-29
Release date:2005-12-29
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (3.07 Å)
Cite:Crystal Structure of the RUN Domain of the RAP2-interacting Protein x
J.Biol.Chem., 281, 2006
2CXL
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RUN DOMAIN OF RAP2 INTERACTING PROTEIN X, CRYSTALLIZED IN I422 SPACE GROUP
Descriptor:rap2 interacting protein x
Authors:Kukimoto-Niino, M., Umehara, T., Murayama, K., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2005-06-30
Release date:2005-12-30
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Crystal Structure of the RUN Domain of the RAP2-interacting Protein x
J.Biol.Chem., 281, 2006
2CXX
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CRYSTAL STRUCTURE OF A PROBABLE GTP-BINDING PROTEIN ENGB
Descriptor:Probable GTP-binding protein engB, GUANOSINE-5'-DIPHOSPHATE
Authors:Kukimoto-Niino, M., Murayama, K., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2005-07-01
Release date:2006-01-01
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystal structure of a probable GTP-binding protein engB
To be Published
2DBY
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CRYSTAL STRUCTURE OF THE GTP-BINDING PROTEIN YCHF IN COMPLEXED WITH GDP
Descriptor:GTP-binding protein, GUANOSINE-5'-DIPHOSPHATE, FORMIC ACID
Authors:Kukimoto-Niino, M., Murayama, K., Shirouzu, M., Kuramitsu, S., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2005-12-16
Release date:2006-06-16
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.76 Å)
Cite:Crystal structure of the GTP-binding protein YchF in complexed with GDP
To be Published
2DWB
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AURORA-A KINASE COMPLEXED WITH AMPPNP
Descriptor:Serine/threonine-protein kinase 6, SULFATE ION, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
Authors:Kukimoto-Niino, M., Murayama, K., Shirouzu, S., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2006-08-10
Release date:2007-07-31
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Aurora-A kinase complexed with AMPPNP
To be Published
2DWG
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RUN DOMAIN OF RAP2 INTERACTING PROTEIN X, CRYSTALLIZED IN P2(1)2(1)2(1) SPACE GROUP
Descriptor:Protein RUFY3
Authors:Kukimoto-Niino, M., Murayama, K., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2006-08-11
Release date:2006-10-24
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (3.22 Å)
Cite:Crystal Structure of the RUN Domain of the RAP2-interacting Protein x
J.Biol.Chem., 281, 2006
2DWK
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CRYSTAL STRUCTURE OF THE RUN DOMAIN OF MOUSE RAP2 INTERACTING PROTEIN X
Descriptor:Protein RUFY3
Authors:Kukimoto-Niino, M., Murayama, K., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2006-08-15
Release date:2006-08-29
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal Structure of the RUN Domain of the RAP2-interacting Protein x
J.Biol.Chem., 281, 2006
2DWQ
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THERMUS THERMOPHILUS YCHF GTP-BINDING PROTEIN
Descriptor:GTP-binding protein
Authors:Kukimoto-Niino, M., Murayama, K., Shorouzu, M., Kuramitsu, S., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2006-08-16
Release date:2007-02-16
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.95 Å)
Cite:Thermus thermophilus YchF GTP-binding protein
To be Published
2DYL
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CRYSTAL STRUCTURE OF HUMAN MITOGEN-ACTIVATED PROTEIN KINASE KINASE 7 ACTIVATED MUTANT (S287D, T291D)
Descriptor:Dual specificity mitogen-activated protein kinase kinase 7
Authors:Kukimoto-Niino, M., Takagi, T., Kaminishi, T., Uchikubo-Kamo, T., Terada, T., Matsuzaki, O., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2006-09-15
Release date:2007-08-28
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.45 Å)
Cite:Crystal structure of human mitogen-activated protein kinase kinase 7 activated mutant (S287D, T291D)
To be Published
2E87
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CRYSTAL STRUCTURE OF HYPOTHETICAL GTP-BINDING PROTEIN PH1320 FROM PYROCOCCUS HORIKOSHII OT3, IN COMPLEX WITH GDP
Descriptor:Hypothetical protein PH1320, SULFATE ION, GUANOSINE-5'-DIPHOSPHATE
Authors:Kukimoto-Niino, M., Bessho, Y., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-01-19
Release date:2007-07-24
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:Crystal structure of hypothetical GTP-binding protein PH1320 from Pyrococcus horikoshii OT3, in complex with GDP
To be Published
6AJ4
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CRYSTAL STRUCTURE OF THE DHR-2 DOMAIN OF DOCK7 IN COMPLEX WITH CDC42
Descriptor:Dedicator of cytokinesis protein 7, Cell division control protein 42 homolog
Authors:Kukimoto-Niino, M., Shirouzu, M.
Deposit date:2018-08-27
Release date:2019-03-20
Last modified:2019-04-03
Method:X-RAY DIFFRACTION (3.256 Å)
Cite:Structural Basis for the Dual Substrate Specificity of DOCK7 Guanine Nucleotide Exchange Factor.
Structure, 2019
6AJL
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DOCK7 MUTANT I1836Y COMPLEXED WITH CDC42
Descriptor:Dedicator of cytokinesis protein 7, Cell division control protein 42 homolog
Authors:Kukimoto-Niino, M., Shirouzu, M.
Deposit date:2018-08-28
Release date:2019-03-20
Last modified:2019-04-03
Method:X-RAY DIFFRACTION (3.23 Å)
Cite:Structural Basis for the Dual Substrate Specificity of DOCK7 Guanine Nucleotide Exchange Factor.
Structure, 2019
2ZDX
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INHIBITOR-BOUND STRUCTURES OF HUMAN PYRUVATE DEHYDROGENASE KINASE 4
Descriptor:Pyruvate dehydrogenase kinase isozyme 4, 4-[4-(4-methoxyphenyl)-5-methyl-1H-pyrazol-3-yl]benzene-1,3-diol
Authors:Kawamoto, M., Shiromizu, I., Kukimoto-niino, M., Tokmakov, A., Terada, T., Shirouzu, M., Matsusue, T., Yokoyama, S.
Deposit date:2007-11-30
Release date:2008-12-09
Last modified:2011-11-23
Method:X-RAY DIFFRACTION (2.54 Å)
Cite:Inhibitor-bound structures of human pyruvate dehydrogenase kinase 4.
Acta Crystallogr.,Sect.D, 67, 2011
2ZDY
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INHIBITOR-BOUND STRUCTURES OF HUMAN PYRUVATE DEHYDROGENASE KINASE 4
Descriptor:Pyruvate dehydrogenase kinase isozyme 4, MAGNESIUM ION, ADENOSINE-5'-DIPHOSPHATE, ...
Authors:Kawamoto, M., Shiromizu, I., Kukimoto-Niino, M., Tokmakov, A., Terada, T., Shirouzu, M., Matsusue, T., Yokoyama, S.
Deposit date:2007-12-01
Release date:2008-12-09
Last modified:2017-10-11
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Inhibitor-bound structures of human pyruvate dehydrogenase kinase 4.
Acta Crystallogr.,Sect.D, 67, 2011
2ZV2
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CRYSTAL STRUCTURE OF HUMAN CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE 2, BETA, CAMKK2 KINASE DOMAIN IN COMPLEX WITH STO-609
Descriptor:Calcium/calmodulin-dependent protein kinase kinase 2, 7-oxo-7H-benzimidazo[2,1-a]benz[de]isoquinoline-3-carboxylic acid
Authors:Yoshikawa, S., Kukimoto-niino, M., Shirouzu, M., Suzuki, A., Lee, S., Minokoshi, Y., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2008-10-31
Release date:2009-11-03
Last modified:2013-11-20
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Crystal structure of the Ca2+/calmodulin-dependent protein kinase kinase in complex with the inhibitor STO-609
J.Biol.Chem., 286, 2011
1WD5
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CRYSTAL STRUCTURE OF TT1426 FROM THERMUS THERMOPHILUS HB8
Descriptor:hypothetical protein TT1426, 2-(N-MORPHOLINO)-ETHANESULFONIC ACID
Authors:Shibata, R., Kukimoto-Niino, M., Murayama, K., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2004-05-11
Release date:2004-11-11
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of a predicted phosphoribosyltransferase (TT1426) from Thermus thermophilus HB8 at 2.01 A resolution
Protein Sci., 14, 2005
3AB3
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CRYSTAL STRUCTURE OF P115RHOGEF RGS DOMAIN IN COMPLEX WITH G ALPHA 13
Descriptor:Guanine nucleotide-binding protein G(k) subunit alpha, Guanine nucleotide-binding protein subunit alpha-13, Rho guanine nucleotide exchange factor 1, ...
Authors:Kukimoto-Niino, M., Mishima, C., Shirouzu, M., Kozasa, T., Yokoyama, S.
Deposit date:2009-11-30
Release date:2010-12-29
Last modified:2017-08-23
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Identification of critical residues in G(alpha)13 for stimulation of p115RhoGEF activity and the structure of the G(alpha)13-p115RhoGEF regulator of G protein signaling homology (RH) domain complex.
J.Biol.Chem., 286, 2011
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