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3AI1
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THE CRYSTAL STRUCTURE OF L-SORBOSE REDUCTASE FROM GLUCONOBACTER FRATEURII COMPLEXED WITH NADPH AND L-SORBOSE REVEALS THE STRUCTURE BASES OF ITS CATALYTIC MECHANISM AND HIGH SUBSTRATE SELECTIVITY
Descriptor:NADPH-sorbose reductase
Authors:Kubota, K., Nagata, K., Okai, M., Miyazono, K., Tanokura, M.
Deposit date:2010-05-06
Release date:2011-02-09
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.38 Å)
Cite:The Crystal Structure of l-Sorbose Reductase from Gluconobacter frateurii Complexed with NADPH and l-Sorbose
J.Mol.Biol., 407, 2011
3AI2
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THE CRYSTAL STRUCTURE OF L-SORBOSE REDUCTASE FROM GLUCONOBACTER FRATEURII COMPLEXED WITH NADPH
Descriptor:NADPH-sorbose reductase, NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
Authors:Kubota, K., Nagata, K., Okai, M., Miyazono, K., Tanokura, M.
Deposit date:2010-05-07
Release date:2011-02-09
Last modified:2013-11-20
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:The Crystal Structure of l-Sorbose Reductase from Gluconobacter frateurii Complexed with NADPH and l-Sorbose
J.Mol.Biol., 407, 2011
3AI3
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THE CRYSTAL STRUCTURE OF L-SORBOSE REDUCTASE FROM GLUCONOBACTER FRATEURII COMPLEXED WITH NADPH AND L-SORBOSE
Descriptor:NADPH-sorbose reductase, NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, L-sorbose, ...
Authors:Kubota, K., Nagata, K., Okai, M., Miyazono, K., Tanokura, M.
Deposit date:2010-05-07
Release date:2011-02-09
Last modified:2013-11-20
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:The Crystal Structure of l-Sorbose Reductase from Gluconobacter frateurii Complexed with NADPH and l-Sorbose
J.Mol.Biol., 407, 2011
3B2E
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CRYSTAL STRUCTURE OF S. CEREVISIAE GET3 IN THE OPEN CONFORMATION IN COMPLEX WITH GET1 CYTOSOLIC DOMAIN
Descriptor:ATPase GET3, Golgi to ER traffic protein 1, ADENOSINE-5'-DIPHOSPHATE
Authors:Kubota, K., Yamagata, A., Fukai, S.
Deposit date:2011-07-30
Release date:2012-06-27
Last modified:2013-06-19
Method:X-RAY DIFFRACTION (3 Å)
Cite:Get1 stabilizes an open dimer conformation of get3 ATPase by binding two distinct interfaces
J.Mol.Biol., 422, 2012
3VLC
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CRYSTAL STRUCTURE OF S. CEREVISIAE GET3 IN THE SEMI OPEN CONFORMATION IN COMPLEX WITH GET1 CYTOSOLIC DOMAIN AT 4.5 ANGSTROM RESOLUTION
Descriptor:ATPase GET3, Golgi to ER traffic protein 1, ADENOSINE-5'-DIPHOSPHATE
Authors:Kubota, K., Yamagata, A., Fukai, S.
Deposit date:2011-11-30
Release date:2012-06-20
Last modified:2013-06-19
Method:X-RAY DIFFRACTION (4.5 Å)
Cite:Get1 stabilizes an open dimer conformation of get3 ATPase by binding two distinct interfaces
J.Mol.Biol., 422, 2012
1ZOV
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CRYSTAL STRUCTURE OF MONOMERIC SARCOSINE OXIDASE FROM BACILLUS SP. NS-129
Descriptor:Monomeric sarcosine oxidase, CHLORIDE ION, FLAVIN-ADENINE DINUCLEOTIDE
Authors:Nagata, K., Sasaki, H., Ohtsuka, J., Hua, M., Okai, M., Kubota, K., Kamo, M., Ito, K., Ichikawa, T., Koyama, Y., Tanokura, M.
Deposit date:2005-05-14
Release date:2006-05-23
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.86 Å)
Cite:Crystal structure of monomeric sarcosine oxidase from Bacillus sp. NS-129 reveals multiple conformations at the active-site loop
PROC.JPN.ACAD.,SER.B, 81, 2005
3JRQ
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CRYSTAL STRUCTURE OF (+)-ABA-BOUND PYL1 IN COMPLEX WITH ABI1
Descriptor:Protein phosphatase 2C 56, Putative uncharacterized protein At5g46790, (2Z,4E)-5-[(1S)-1-hydroxy-2,6,6-trimethyl-4-oxocyclohex-2-en-1-yl]-3-methylpenta-2,4-dienoic acid
Authors:Miyazono, K., Miyakawa, T., Sawano, Y., Kubota, K., Tanokura, M.
Deposit date:2009-09-08
Release date:2009-11-03
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structural basis of abscisic acid signalling
Nature, 462, 2009
3JRS
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CRYSTAL STRUCTURE OF (+)-ABA-BOUND PYL1
Descriptor:Putative uncharacterized protein At5g46790, (2Z,4E)-5-[(1S)-1-hydroxy-2,6,6-trimethyl-4-oxocyclohex-2-en-1-yl]-3-methylpenta-2,4-dienoic acid
Authors:Miyazono, K., Miyakawa, T., Sawano, Y., Kubota, K., Tanokura, M.
Deposit date:2009-09-08
Release date:2009-11-03
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Structural basis of abscisic acid signalling
Nature, 462, 2009
1Y43
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CRYSTAL STRUCTURE OF ASPERGILLOGLUTAMIC PEPTIDASE FROM ASPERGILLUS NIGER
Descriptor:Aspergillopepsin II light chain, Aspergillopepsin II heavy chain, SULFATE ION
Authors:Sasaki, H., Nakagawa, A., Iwata, S., Muramatsu, T., Suganuma, M., Sawano, Y., Kojima, M., Kubota, K., Takahashi, K.
Deposit date:2004-11-30
Release date:2005-12-13
Last modified:2013-02-27
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:The three-dimensional structure of aspergilloglutamic peptidase from Aspergillus niger
Proc.Jpn.Acad.,Ser.B, 80, 2004
3A76
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THE CRYSTAL STRUCTURE OF LINA
Descriptor:Gamma-hexachlorocyclohexane dehydrochlorinase, SPERMIDINE, GLYCEROL
Authors:Okai, M., Kubota, K., Fukuda, M., Nagata, Y., Nagata, K., Tanokura, M.
Deposit date:2009-09-15
Release date:2010-09-15
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Crystal structure of g-hexachlorocyclohexane dehydrochlorinase LinA from Sphingobium japonicum UT26
J.Mol.Biol., 2010
3ORY
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CRYSTAL STRUCTURE OF FLAP ENDONUCLEASE 1 FROM HYPERTHERMOPHILIC ARCHAEON DESULFUROCOCCUS AMYLOLYTICUS
Descriptor:flap endonuclease 1, PHOSPHATE ION
Authors:Mase, T., Kubota, K., Miyazono, K., Kawarabayashii, Y., Tanokura, M.
Deposit date:2010-09-08
Release date:2011-02-09
Last modified:2011-07-27
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structure of flap endonuclease 1 from the hyperthermophilic archaeon Desulfurococcus amylolyticus
Acta Crystallogr.,Sect.F, 67, 2011
3TRS
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THE CRYSTAL STRUCTURE OF ASPERGILLOGLUTAMIC PEPTIDASE FROM ASPERGILLUS NIGER
Descriptor:Aspergillopepsin-2 light chain, Aspergillopepsin-2 heavy chain, DIMETHYL SULFOXIDE
Authors:Sasaki, H., Kubota, K., Lee, W.C., Ohtsuka, J., Kojima, M., Takahashi, K., Tanokura, M.
Deposit date:2011-09-10
Release date:2012-08-22
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:The crystal structure of an intermediate dimer of aspergilloglutamic peptidase that mimics the enzyme-activation product complex produced upon autoproteolysis.
J.Biochem., 152, 2012
3LQB
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CRYSTAL STRUCTURE OF THE HATCHING ENZYME ZHE1 FROM THE ZEBRAFISH DANIO RERIO
Descriptor:LOC792177 protein, SULFATE ION, ZINC ION, ...
Authors:Tanokura, M., Okada, A., Nagata, K., Yasumasu, S., Ohtsuka, J., Iuchi, I.
Deposit date:2010-02-08
Release date:2010-09-08
Last modified:2014-03-05
Method:X-RAY DIFFRACTION (1.1 Å)
Cite:Crystal structure of zebrafish hatching enzyme 1 from the zebrafish Danio rerio
J.Mol.Biol., 402, 2010
2ZO4
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CRYSTAL STRUCTURE OF METALLO-BETA-LACTAMASE FAMILY PROTEIN TTHA1429 FROM THERMUS THERMOPHILUS HB8
Descriptor:Metallo-beta-lactamase family protein, ZINC ION
Authors:Yamamura, A., Nagata, K., Agari, Y., Ebihara, A., Nakagawa, N., Yokoyama, S., Kuramitsu, S., Tanokura, M.
Deposit date:2008-05-05
Release date:2009-03-17
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal structure of TTHA1429, a novel metallo-beta-lactamase superfamily protein from Thermus thermophilus HB8.
Proteins, 73, 2008
2ZTS
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CRYSTAL STRUCTURE OF KAIC-LIKE PROTEIN PH0186 FROM HYPERTHERMOPHILIC ARCHAEA PYROCOCCUS HORIKOSHII OT3
Descriptor:Putative uncharacterized protein PH0186, ADENOSINE-5'-DIPHOSPHATE, MAGNESIUM ION
Authors:Ming, H., Miyazono, K., Tanokura, M.
Deposit date:2008-10-08
Release date:2009-03-24
Last modified:2017-10-11
Method:X-RAY DIFFRACTION (2.07 Å)
Cite:Crystal structure of KaiC-like protein PH0186 from hyperthermophilic archaea Pyrococcus horikoshii OT3
Proteins, 75, 2009
3VON
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CRYSTALSTRUCTURE OF THE UBIQUITIN PROTEASE
Descriptor:Ubiquitin thioesterase OTUB1, Ubiquitin-conjugating enzyme E2 variant 2, Ubiquitin-conjugating enzyme E2 N
Authors:Sato, Y., Fukai, S.
Deposit date:2012-01-30
Release date:2012-05-30
Method:X-RAY DIFFRACTION (3.15 Å)
Cite:Molecular basis of K63-linked polyubiquitination inhibition by the interaction between human deubiquitinating enzyme OTUB1 and ubiquitin-conjugating enzyme UBC13
To be Published
2RTX
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SOLUTION STRUCTURE OF THE GGQ DOMAIN OF YAEJ PROTEIN FROM ESCHERICHIA COLI
Descriptor:Peptidyl-tRNA hydrolase YaeJ
Authors:Nameki, N., Enomoto, M., Kogure, H., Tochio, N., Guntert, P.
Deposit date:2013-09-21
Release date:2013-12-25
Last modified:2014-03-26
Method:SOLUTION NMR
Cite:Identification of residues required for stalled-ribosome rescue in the codon-independent release factor YaeJ
Nucleic Acids Res., 42, 2014
3WXE
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CRYSTAL STRUCTURE OF CYLD USP DOMAIN (C596S) IN COMPLEX WITH MET1-LINKED DIUBIQUITIN
Descriptor:Uncharacterized protein, Ubiquitin
Authors:Sato, Y., Fukai, S.
Deposit date:2014-07-30
Release date:2015-02-11
Last modified:2017-08-16
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structures of CYLD USP with Met1- or Lys63-linked diubiquitin reveal mechanisms for dual specificity
Nat.Struct.Mol.Biol., 2015
3WXF
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CRYSTAL STRUCTURE OF CYLD USP DOMAIN (C596S E674Q) IN COMPLEX WITH MET1-LINKED DIUBIQUITIN
Descriptor:Uncharacterized protein, Ubiquitin, SULFATE ION
Authors:Sato, Y., Fukai, S.
Deposit date:2014-07-30
Release date:2015-02-11
Last modified:2017-08-16
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structures of CYLD USP with Met1- or Lys63-linked diubiquitin reveal mechanisms for dual specificity
Nat.Struct.Mol.Biol., 2015
3WXG
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CRYSTAL STRUCTURE OF CYLD USP DOMAIN (C596A) IN COMPLEX WITH LYS63-LINKED DIUBIQUITIN
Descriptor:Uncharacterized protein, Ubiquitin
Authors:Sato, Y., Fukai, S.
Deposit date:2014-07-30
Release date:2015-02-11
Last modified:2017-08-16
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Structures of CYLD USP with Met1- or Lys63-linked diubiquitin reveal mechanisms for dual specificity
Nat.Struct.Mol.Biol., 2015
5H11
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CRYSTAL STRUCTURE OF ZEBRAFISH SEC10
Descriptor:Uncharacterized protein, BROMIDE ION
Authors:Chen, J., Yamagata, A., Fukai, S.
Deposit date:2016-10-07
Release date:2017-02-01
Method:X-RAY DIFFRACTION (2.732 Å)
Cite:Crystal structure of Sec10, a subunit of the exocyst complex
Sci Rep, 7, 2017
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