Author results

6BNA
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BINDING OF AN ANTITUMOR DRUG TO DNA. NETROPSIN AND C-G-C-G-A-A-T-T-BRC-G-C-G
分子名称:DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*(CBR)P*GP*CP*G)-3'), NETROPSIN
著者Kopka, M.L., Yoon, C., Goodsell, D., Pjura, P., Dickerson, R.E.
登録日1984-08-30
公開日1984-10-29
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (2.21 Å)
主引用文献Binding of an antitumor drug to DNA, Netropsin and C-G-C-G-A-A-T-T-BrC-G-C-G.
J.Mol.Biol., 183, 1985
1PJG
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RNA/DNA HYBRID DECAMER OF CAAAGAAAAG/CTTTTCTTTG
分子名称:5'-R(*CP*AP*AP*AP*GP*AP*AP*AP*AP*G)-3', 5'-D(*CP*TP*TP*TP*TP*CP*TP*TP*TP*G)-3', CALCIUM ION
著者Kopka, M.L., Lavelle, L., Han, G.W., Ng, H.-L., Dickerson, R.E.
登録日2003-06-02
公開日2003-12-09
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (1.15 Å)
主引用文献An unusual sugar conformation in the structure of an RNA/DNA decamer of the polypurine tract may affect recognition by RNase H.
J.Mol.Biol., 334, 2003
1PJO
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CRYSTAL STRUCTURE OF AN RNA/DNA HYBRID OF HIV-1 PPT
分子名称:5'-R(*CP*AP*AP*AP*GP*AP*AP*AP*AP*G)-3', 5'-D(*CP*TP*TP*TP*TP*CP*TP*TP*TP*G)-3', MAGNESIUM ION
著者Kopka, M.L., Lavelle, L., Han, G.W., Ng, H.-L., Dickerson, R.E.
登録日2003-06-03
公開日2003-12-09
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (1.1 Å)
主引用文献An Unusual Sugar Conformation in the Structure of an RNA/DNA Decamer of the Polypurine Tract May Affect Recognition by RNase H
J.Mol.Biol., 334, 2003
274D
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CRYSTAL STRUCTURE OF A COVALENT DNA-DRUG ADDUCT: ANTHRAMYCIN BOUND TO C-C-A-A-C-G-T-T-G-G, AND A MOLECULAR EXPLANATION OF SPECIFICITY
分子名称:DNA (5'-D(*CP*CP*AP*AP*CP*GP*TP*TP*(DRUG)GP*G)-3'), ANTHRAMYCIN
著者Kopka, M.L., Goodsell, D.S., Baikalov, I., Grzeskowiak, K., Cascio, D., Dickerson, R.E.
登録日1994-04-28
公開日1994-10-21
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Crystal structure of a covalent DNA-drug adduct: anthramycin bound to C-C-A-A-C-G-T-T-G-G and a molecular explanation of specificity.
Biochemistry, 33, 1994
334D
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DEFINING GC-SPECIFICITY IN THE MINOR GROOVE: SIDE-BY-SIDE BINDING OF THE DI-IMIDAZOLE LEXITROPSIN TO C-A-T-G-G-C-C-A-T-G
分子名称:DNA (5'-D(*CP*AP*TP*GP*GP*CP*CP*AP*TP*G)-3'), DIIMIDAZOLE LEXITROPSIN, CALCIUM ION
著者Kopka, M.L., Goodsell, D.S., Dickerson, R.E.
登録日1997-05-22
公開日1997-08-29
最終更新日2018-04-04
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Defining GC-specificity in the minor groove: side-by-side binding of the di-imidazole lexitropsin to C-A-T-G-G-C-C-A-T-G.
Structure, 5, 1997
3BNA
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REVERSIBLE BENDING AND HELIX GEOMETRY IN A B-DNA DODECAMER: CGCGAATTBRCGCG
分子名称:DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*(CBR)P*GP*CP*G)-3')
著者Kopka, M.L., Fratini, A.V., Dickerson, R.E.
登録日1982-02-16
公開日1982-04-15
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献Reversible bending and helix geometry in a B-DNA dodecamer: CGCGAATTBrCGCG.
J.Biol.Chem., 257, 1982
4BNA
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REVERSIBLE BENDING AND HELIX GEOMETRY IN A B-DNA DODECAMER: CGCGAATTBRCGCG
分子名称:DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*(CBR)P*GP*CP*G)-3')
著者Kopka, M.L., Fratini, A.V., Dickerson, R.E.
登録日1982-02-16
公開日1982-04-15
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Reversible bending and helix geometry in a B-DNA dodecamer: CGCGAATTBrCGCG.
J.Biol.Chem., 257, 1982
1SK5
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THE ULTRA-HIGH RESOLUTION STRUCTURE OF D(CTTTTAAAAG)2: MODULATION OF BENDING BY T-A STEPS AND ITS ROLE IN DNA RECOGNITION
分子名称:5'-D(*CP*TP*TP*TP*TP*AP*AP*AP*AP*G)-3', CALCIUM ION
著者Han, G.W., Langs, D., Kopka, M.L., Dickerson, R.E.
登録日2004-03-04
公開日2005-06-21
最終更新日2018-02-14
実験手法X-RAY DIFFRACTION (0.89 Å)
主引用文献The ultra-high resolution structure of d(CTTTTAAAAG)2: modulation of bending by T-A steps and its role in DNA recognition
To be Published
101D
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REFINEMENT OF NETROPSIN BOUND TO DNA: BIAS AND FEEDBACK IN ELECTRON DENSITY MAP INTERPRETATION
分子名称:DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*(CBR)P*GP*CP*G)-3'), MAGNESIUM ION, NETROPSIN
著者Goodsell, D.S., Kopka, M.L., Dickerson, R.E.
登録日1994-12-14
公開日1995-02-27
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (2.25 Å)
主引用文献Refinement of netropsin bound to DNA: bias and feedback in electron density map interpretation.
Biochemistry, 34, 1995
1D61
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THE STRUCTURE OF THE B-DNA DECAMER C-C-A-A-C-I-T-T-G-G: MONOCLINIC FORM
分子名称:DNA (5'-D(*CP*CP*AP*AP*CP*IP*TP*TP*GP*G)-3'), CACODYLATE ION, CALCIUM ION
著者Lipanov, A., Kopka, M.L., Kaczor-Grzeskowiak, M., Quintana, J., Dickerson, R.E.
登録日1992-02-26
公開日1993-04-15
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (1.3 Å)
主引用文献Structure of the B-DNA decamer C-C-A-A-C-I-T-T-G-G in two different space groups: conformational flexibility of B-DNA.
Biochemistry, 32, 1993
1D62
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THE STRUCTURE OF A /B-DNA$ DECAMER WITH AN I(SLASH)*A MISMATCH AND COMPARISON WITH THE G(SLASH)*A MISMATCH
分子名称:5'-D(*CP*CP*AP*AP*IP*AP*TP*TP*GP*G)-3'
著者Lipanov, A., Kopka, M.L., Kaczor-Grzeskowiak, M., Dickerson, R.E.
登録日1992-03-01
公開日1993-07-15
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Structure of the B-DNA decamer C-C-A-A-C-I-T-T-G-G in two different space groups: conformational flexibility of B-DNA.
Biochemistry, 32, 1993
1ZG1
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NARL COMPLEXED TO NIRB PROMOTER NON-PALINDROMIC TAIL-TO-TAIL DNA SITE
分子名称:5'-D(*CP*GP*TP*AP*CP*TP*CP*CP*TP*TP*AP*AP*TP*GP*GP*GP*TP*AP*CP*G)-3', 5'-D(*CP*GP*TP*AP*CP*CP*CP*AP*TP*TP*AP*AP*GP*GP*AP*GP*TP*AP*CP*G)-3', Nitrate/nitrite response regulator protein narL, ...
著者Maris, A.E., Kaczor-Grzeskowiak, M., Ma, Z., Kopka, M.L., Gunsalus, R.P., Dickerson, R.E.
登録日2005-04-20
公開日2005-11-22
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Primary and Secondary Modes of DNA Recognition by the NarL Two-Component Response Regulator.
Biochemistry, 44, 2005
1ZG5
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NARL COMPLEXED TO NARG-89 PROMOTER PALINDROMIC TAIL-TO-TAIL DNA SITE
分子名称:5'-D(*CP*GP*TP*AP*CP*CP*CP*CP*TP*AP*TP*AP*GP*GP*GP*GP*TP*AP*CP*G)-3', Nitrate/nitrite response regulator protein narL, SULFATE ION
著者Maris, A.E., Kaczor-Grzeskowiak, M., Ma, Z., Kopka, M.L., Gunsalus, R.P., Dickerson, R.E.
登録日2005-04-20
公開日2005-11-22
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Primary and Secondary Modes of DNA Recognition by the NarL Two-Component Response Regulator.
Biochemistry, 44, 2005
126D
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CRYSTAL STRUCTURE OF CATGGCCATG AND ITS IMPLICATIONS FOR A-TRACT BENDING MODELS
分子名称:DNA (5'-D(*CP*AP*TP*GP*GP*CP*CP*AP*TP*G)-3')
著者Goodsell, D.S., Kopka, M.L., Cascio, D., Dickerson, R.E.
登録日1993-06-14
公開日1993-10-15
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Crystal structure of CATGGCCATG and its implications for A-tract bending models.
Proc.Natl.Acad.Sci.USA, 90, 1993
1D29
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CRYSTAL STRUCTURE ANALYSIS OF THE B-DNA DODECAMER CGTGAATTCACG
分子名称:DNA (5'-D(*CP*GP*TP*GP*AP*AP*TP*TP*CP*AP*CP*G)-3')
著者Larsen, T.A., Kopka, M.L., Dickerson, R.E.
登録日1991-05-23
公開日1992-04-15
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Crystal structure analysis of the B-DNA dodecamer CGTGAATTCACG.
Biochemistry, 30, 1991
1D60
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THE STRUCTURE OF THE B-DNA DECAMER C-C-A-A-C-I-T-T-G-G: TRIGONAL FORM
分子名称:DNA (5'-D(*CP*CP*AP*AP*CP*IP*TP*TP*GP*G)-3'), MAGNESIUM ION
著者Lipanov, A., Kopka, M.L., Kaczor-Grzeskowiak, M., Quintana, J., Dickerson, R.E.
登録日1992-02-26
公開日1993-04-15
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Structure of the B-DNA decamer C-C-A-A-C-I-T-T-G-G in two different space groups: conformational flexibility of B-DNA.
Biochemistry, 32, 1993
1DC0
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CRYSTAL STRUCTURE OF AN A/B-DNA INTERMEDIATE CATGGGCCCATG
分子名称:DNA (5'-D(*CP*AP*TP*GP*GP*GP*CP*CP*CP*AP*TP*G)-3')
著者Ng, H.L., Kopka, M.L., Dickerson, R.E.
登録日1999-11-03
公開日2000-03-06
最終更新日2017-02-01
実験手法X-RAY DIFFRACTION (1.3 Å)
主引用文献The structure of a stable intermediate in the A ;-> B DNA helix transition
Proc.Natl.Acad.Sci.USA, 97, 2000
1JB8
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THE CRYSTAL STRUCTURE OF AN RNA/DNA HYBRID REVEALS NOVEL INTERMOLECULAR INTERCALATION
分子名称:5'-R(*CP*AP*AP*AP*GP*AP*AP*AP*AP*G)-3', 5'-D(*CP*TP*TP*TP*TP*CP*TP*TP*TP*G)-3'
著者Han, G.W., Kopka, M.L., Langs, D., Dickerson, R.E.
登録日2001-06-02
公開日2003-07-01
最終更新日2017-10-04
実験手法X-RAY DIFFRACTION (2.38 Å)
主引用文献Crystal structure of an RNADNA hybrid reveals intermolecular intercalation: Dimer formation by base-pair swapping
Proc.Natl.Acad.Sci.USA, 100, 2003
1JE8
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TWO-COMPONENT RESPONSE REGULATOR NARL/DNA COMPLEX: DNA BENDING FOUND IN A HIGH AFFINITY SITE
分子名称:5'-D(*CP*GP*TP*AP*CP*CP*CP*AP*TP*TP*AP*AP*TP*GP*GP*GP*TP*AP*CP*G)-3', Nitrate/Nitrite Response Regulator Protein NARL, SULFATE ION
著者Maris, A.E., Sawaya, M.R., Kaczor-Grzeskowiak, M., Jarvis, M.R., Bearson, S.M.D., Kopka, M.L., Schroder, I., Gunsalus, R.P., Dickerson, R.E.
登録日2001-06-15
公開日2002-09-27
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (2.12 Å)
主引用文献Dimerization allows DNA target site recognition by the NarL response regulator.
Nat.Struct.Biol., 9, 2002
1LEX
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STRUCTURE OF A DICATIONIC MONOIMIDAZOLE LEXITROPSIN BOUND TO DNA (ORIENTATION 1)
分子名称:DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3'), MONOIMIDAZOLE LEXITROPSIN
著者Goodsell, D.S., Ng, H.L., Kopka, M.L., Lown, J.W., Dickerson, R.E.
登録日1995-10-10
公開日1996-04-03
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (2.25 Å)
主引用文献Structure of a dicationic monoimidazole lexitropsin bound to DNA.
Biochemistry, 34, 1995
1LEY
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STRUCTURE OF A DICATIONIC MONOIMIDAZOLE LEXITROPSIN BOUND TO DNA (ORIENTATION 2)
分子名称:DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3'), MONOIMIDAZOLE LEXITROPSIN
著者Goodsell, D.S., Ng, H.L., Kopka, M.L., Lown, J.W., Dickerson, R.E.
登録日1995-10-10
公開日1996-04-03
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (2.25 Å)
主引用文献Structure of a dicationic monoimidazole lexitropsin bound to DNA.
Biochemistry, 34, 1995
307D
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STRUCTURE OF A DNA ANALOG OF THE PRIMER FOR HIV-1 RT SECOND STRAND SYNTHESIS
分子名称:DNA (5'-D(*CP*AP*AP*AP*GP*AP*AP*AP*AP*G)-3'), DNA (5'-D(*CP*TP*TP*TP*TP*CP*TP*TP*TP*G)-3')
著者Han, G.W., Kopka, M.L., Cascio, D., Grzeskowiak, K., Dickerson, R.E.
登録日1997-01-07
公開日1997-01-27
最終更新日2018-04-04
実験手法X-RAY DIFFRACTION (1.85 Å)
主引用文献Structure of a DNA analog of the primer for HIV-1 RT second strand synthesis.
J.Mol.Biol., 269, 1997
5BNA
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THE PRIMARY MODE OF BINDING OF CISPLATIN TO A B-DNA DODECAMER: C-G-C-G-A-A-T-T-C-G-C-G
分子名称:DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3'), PLATINUM TRIAMINE ION
著者Wing, R.M., Pjura, P., Drew, H.R., Dickerson, R.E.
登録日1983-08-22
公開日1983-11-02
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献The primary mode of binding of cisplatin to a B-DNA dodecamer: C-G-C-G-A-A-T-T-C-G-C-G
EMBO J., 3, 1984
8BNA
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BINDING OF HOECHST 33258 TO THE MINOR GROOVE OF B-DNA
分子名称:DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3'), 2'-(4-HYDROXYPHENYL)-5-(4-METHYL-1-PIPERAZINYL)-2,5'-BI-BENZIMIDAZOLE, MAGNESIUM ION
著者Pjura, P.E., Grzeskowiak, K., Dickerson, R.E.
登録日1986-08-29
公開日1987-01-15
最終更新日2014-07-02
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Binding of Hoechst 33258 to the minor groove of B-DNA.
J.Mol.Biol., 197, 1987
1FK0
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STRUCTURAL BASIS OF NON-SPECIFIC LIPID BINDING IN MAIZE LIPID-TRANSFER PROTEIN COMPLEXES WITH CAPRIC ACID REVEALED BY HIGH-RESOLUTION X-RAY CRYSTALLOGRAPHY
分子名称:NONSPECIFIC LIPID-TRANSFER PROTEIN, DECANOIC ACID, FORMIC ACID
著者Han, G.W., Lee, J.Y., Song, H.K., Shin, D.H., Suh, S.W.
登録日2000-08-08
公開日2001-06-06
最終更新日2017-10-04
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Structural basis of non-specific lipid binding in maize lipid-transfer protein complexes revealed by high-resolution X-ray crystallography.
J.Mol.Biol., 308, 2001
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