Author results

1SK5
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THE ULTRA-HIGH RESOLUTION STRUCTURE OF D(CTTTTAAAAG)2: MODULATION OF BENDING BY T-A STEPS AND ITS ROLE IN DNA RECOGNITION
Descriptor:5'-D(*CP*TP*TP*TP*TP*AP*AP*AP*AP*G)-3', CALCIUM ION
Authors:Han, G.W., Langs, D., Kopka, M.L., Dickerson, R.E.
Deposit date:2004-03-04
Release date:2005-06-21
Last modified:2018-02-14
Method:X-RAY DIFFRACTION (0.89 Å)
Cite:The ultra-high resolution structure of d(CTTTTAAAAG)2: modulation of bending by T-A steps and its role in DNA recognition
To be Published
1PJO
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CRYSTAL STRUCTURE OF AN RNA/DNA HYBRID OF HIV-1 PPT
Descriptor:5'-R(*CP*AP*AP*AP*GP*AP*AP*AP*AP*G)-3', 5'-D(*CP*TP*TP*TP*TP*CP*TP*TP*TP*G)-3', MAGNESIUM ION
Authors:Kopka, M.L., Lavelle, L., Han, G.W., Ng, H.-L., Dickerson, R.E.
Deposit date:2003-06-03
Release date:2003-12-09
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.1 Å)
Cite:An Unusual Sugar Conformation in the Structure of an RNA/DNA Decamer of the Polypurine Tract May Affect Recognition by RNase H
J.Mol.Biol., 334, 2003
1G4Q
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RNA/DNA HYBRID DECAMER OF CAAAGAAAAG/CTTTTCTTTG
Descriptor:5'-R(*CP*AP*AP*AP*GP*AP*AP*AP*AP*G)-3', 5'-D(*CP*TP*TP*TP*TP*CP*TP*TP*TP*G)-3', CALCIUM ION, ...
Authors:Han, G.W.
Deposit date:2000-10-27
Release date:2003-07-08
Last modified:2017-10-04
Method:X-RAY DIFFRACTION (1.15 Å)
Cite:Direct-methods determination of an RNA/DNA hybrid decamer at 1.15 A resolution.
Acta Crystallogr.,Sect.D, 57, 2001
1PJG
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RNA/DNA HYBRID DECAMER OF CAAAGAAAAG/CTTTTCTTTG
Descriptor:5'-R(*CP*AP*AP*AP*GP*AP*AP*AP*AP*G)-3', 5'-D(*CP*TP*TP*TP*TP*CP*TP*TP*TP*G)-3', CALCIUM ION
Authors:Kopka, M.L., Lavelle, L., Han, G.W., Ng, H.-L., Dickerson, R.E.
Deposit date:2003-06-02
Release date:2003-12-09
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.15 Å)
Cite:An unusual sugar conformation in the structure of an RNA/DNA decamer of the polypurine tract may affect recognition by RNase H.
J.Mol.Biol., 334, 2003
1D61
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THE STRUCTURE OF THE B-DNA DECAMER C-C-A-A-C-I-T-T-G-G: MONOCLINIC FORM
Descriptor:DNA (5'-D(*CP*CP*AP*AP*CP*IP*TP*TP*GP*G)-3'), CACODYLATE ION, CALCIUM ION
Authors:Lipanov, A., Kopka, M.L., Kaczor-Grzeskowiak, M., Quintana, J., Dickerson, R.E.
Deposit date:1992-02-26
Release date:1993-04-15
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Structure of the B-DNA decamer C-C-A-A-C-I-T-T-G-G in two different space groups: conformational flexibility of B-DNA.
Biochemistry, 32, 1993
1DC0
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CRYSTAL STRUCTURE OF AN A/B-DNA INTERMEDIATE CATGGGCCCATG
Descriptor:DNA (5'-D(*CP*AP*TP*GP*GP*GP*CP*CP*CP*AP*TP*G)-3')
Authors:Ng, H.L., Kopka, M.L., Dickerson, R.E.
Deposit date:1999-11-03
Release date:2000-03-06
Last modified:2017-02-01
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:The structure of a stable intermediate in the A ;-> B DNA helix transition
Proc.Natl.Acad.Sci.USA, 97, 2000
1FK5
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STRUCTURAL BASIS OF NON-SPECIFIC LIPID BINDING IN MAIZE LIPID-TRANSFER PROTEIN COMPLEXES WITH OLEIC ACID REVEALED BY HIGH-RESOLUTION X-RAY CRYSTALLOGRAPHY
Descriptor:NONSPECIFIC LIPID-TRANSFER PROTEIN, OLEIC ACID, FORMIC ACID
Authors:Han, G.W., Lee, J.Y., Song, H.K., Shin, D.H., Suh, S.W.
Deposit date:2000-08-09
Release date:2001-06-06
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Structural basis of non-specific lipid binding in maize lipid-transfer protein complexes revealed by high-resolution X-ray crystallography.
J.Mol.Biol., 308, 2001
3DNB
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HELIX GEOMETRY, HYDRATION, AND G.A MISMATCH IN A B-DNA DECAMER
Descriptor:DNA (5'-D(*CP*CP*AP*AP*GP*AP*TP*TP*GP*G)-3'), MAGNESIUM ION
Authors:Prive, G.G., Dickerson, R.E.
Deposit date:1988-03-18
Release date:1989-01-09
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Structure of the B-DNA decamer C-C-A-A-C-G-T-T-G-G and comparison with isomorphous decamers C-C-A-A-G-A-T-T-G-G and C-C-A-G-G-C-C-T-G-G.
J.Mol.Biol., 217, 1991
3SSF
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CRYSTAL STRUCTURE OF RNA:DNA DODECAMER CORRESPONDING TO HIV-1 POLYPURINE TRACT, AT 1.6 A RESOLUTION.
Descriptor:5'-R(*UP*AP*AP*AP*AP*GP*AP*AP*AP*AP*GP*G)-3', 5'-D(*CP*CP*TP*TP*TP*TP*CP*TP*TP*TP*TP*A)-3', MAGNESIUM ION
Authors:Drozdzal, P., Michalska, K., Kierzek, R., Lomozik, L., Jaskolski, M.
Deposit date:2011-07-08
Release date:2012-02-08
Last modified:2012-03-28
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Structure of an RNA/DNA dodecamer corresponding to the HIV-1 polypurine tract at 1.6 Angstrom resolution
Acta Crystallogr.,Sect.D, 68, 2012
1FK0
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STRUCTURAL BASIS OF NON-SPECIFIC LIPID BINDING IN MAIZE LIPID-TRANSFER PROTEIN COMPLEXES WITH CAPRIC ACID REVEALED BY HIGH-RESOLUTION X-RAY CRYSTALLOGRAPHY
Descriptor:NONSPECIFIC LIPID-TRANSFER PROTEIN, DECANOIC ACID, FORMIC ACID
Authors:Han, G.W., Lee, J.Y., Song, H.K., Shin, D.H., Suh, S.W.
Deposit date:2000-08-08
Release date:2001-06-06
Last modified:2017-10-04
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural basis of non-specific lipid binding in maize lipid-transfer protein complexes revealed by high-resolution X-ray crystallography.
J.Mol.Biol., 308, 2001
1FK1
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STRUCTURAL BASIS OF NON-SPECIFIC LIPID BINDING IN MAIZE LIPID-TRANSFER PROTEIN COMPLEXES WITH LAURIC ACID REVEALED BY HIGH-RESOLUTION X-RAY CRYSTALLOGRAPHY
Descriptor:NON-SPECIFIC LIPID TRANSFER PROTEIN, LAURIC ACID, FORMIC ACID
Authors:Han, G.W., Lee, J.Y., Song, H.K., Shin, D.H., Suh, S.W.
Deposit date:2000-08-09
Release date:2001-06-06
Last modified:2017-10-04
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural basis of non-specific lipid binding in maize lipid-transfer protein complexes revealed by high-resolution X-ray crystallography.
J.Mol.Biol., 308, 2001
1FK2
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STRUCTURAL BASIS OF NON-SPECIFIC LIPID BINDING IN MAIZE LIPID-TRANSFER PROTEIN COMPLEXES WITH MYRISTIC ACID REVEALED BY HIGH-RESOLUTION X-RAY CRYSTALLOGRAPHY
Descriptor:NONSPECIFIC LIPID-TRANSFER PROTEIN, MYRISTIC ACID, FORMIC ACID
Authors:Han, G.W., Lee, J.Y., Song, H.K., Shin, D.H., Suh, S.W.
Deposit date:2000-08-09
Release date:2001-06-06
Last modified:2017-10-04
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural basis of non-specific lipid binding in maize lipid-transfer protein complexes revealed by high-resolution X-ray crystallography.
J.Mol.Biol., 308, 2001
1FK3
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STRUCTURAL BASIS OF NON-SPECIFIC LIPID BINDING IN MAIZE LIPID-TRANSFER PROTEIN COMPLEXES WITH PALMITOLEIC ACID REVEALED BY HIGH-RESOLUTION X-RAY CRYSTALLOGRAPHY
Descriptor:NONSPECIFIC LIPID-TRANSFER PROTEIN, PALMITOLEIC ACID, FORMIC ACID
Authors:Han, G.W., Lee, J.Y., Song, H.K., Shin, D.H., Suh, S.W.
Deposit date:2000-08-09
Release date:2001-06-06
Last modified:2017-10-04
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural basis of non-specific lipid binding in maize lipid-transfer protein complexes revealed by high-resolution X-ray crystallography.
J.Mol.Biol., 308, 2001
1FK4
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STRUCTURAL BASIS OF NON-SPECIFIC LIPID BINDING IN MAIZE LIPID-TRANSFER PROTEIN COMPLEXES WITH STEARIC ACID REVEALED BY HIGH-RESOLUTION X-RAY CRYSTALLOGRAPHY
Descriptor:NONSPECIFIC LIPID-TRANSFER PROTEIN, STEARIC ACID, FORMIC ACID
Authors:Han, G.W., Lee, J.Y., Song, H.K., Shin, D.H., Suh, S.W.
Deposit date:2000-08-09
Release date:2001-06-06
Last modified:2017-10-04
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural basis of non-specific lipid binding in maize lipid-transfer protein complexes revealed by high-resolution X-ray crystallography.
J.Mol.Biol., 308, 2001
334D
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DEFINING GC-SPECIFICITY IN THE MINOR GROOVE: SIDE-BY-SIDE BINDING OF THE DI-IMIDAZOLE LEXITROPSIN TO C-A-T-G-G-C-C-A-T-G
Descriptor:DNA (5'-D(*CP*AP*TP*GP*GP*CP*CP*AP*TP*G)-3'), DIIMIDAZOLE LEXITROPSIN, CALCIUM ION
Authors:Kopka, M.L., Goodsell, D.S., Dickerson, R.E.
Deposit date:1997-05-22
Release date:1997-08-29
Last modified:2018-04-04
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Defining GC-specificity in the minor groove: side-by-side binding of the di-imidazole lexitropsin to C-A-T-G-G-C-C-A-T-G.
Structure, 5, 1997
307D
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STRUCTURE OF A DNA ANALOG OF THE PRIMER FOR HIV-1 RT SECOND STRAND SYNTHESIS
Descriptor:DNA (5'-D(*CP*AP*AP*AP*GP*AP*AP*AP*AP*G)-3'), DNA (5'-D(*CP*TP*TP*TP*TP*CP*TP*TP*TP*G)-3')
Authors:Han, G.W., Kopka, M.L., Cascio, D., Grzeskowiak, K., Dickerson, R.E.
Deposit date:1997-01-07
Release date:1997-01-27
Last modified:2018-04-04
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Structure of a DNA analog of the primer for HIV-1 RT second strand synthesis.
J.Mol.Biol., 269, 1997
1FK6
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STRUCTURAL BASIS OF NON-SPECIFIC LIPID BINDING IN MAIZE LIPID-TRANSFER PROTEIN COMPLEXES WITH ALPHA-LINOLENIC ACID REVEALED BY HIGH-RESOLUTION X-RAY CRYSTALLOGRAPHY
Descriptor:NON-SPECIFIC LIPID TRANSFER PROTEIN, ALPHA-LINOLENIC ACID, FORMIC ACID
Authors:Han, G.W., Lee, J.Y., Song, H.K., Shin, D.H., Suh, S.W.
Deposit date:2000-08-09
Release date:2001-06-06
Last modified:2017-10-04
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structural basis of non-specific lipid binding in maize lipid-transfer protein complexes revealed by high-resolution X-ray crystallography.
J.Mol.Biol., 308, 2001
1FK7
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STRUCTURAL BASIS OF NON-SPECIFIC LIPID BINDING IN MAIZE LIPID-TRANSFER PROTEIN COMPLEXES WITH RICINOLEIC ACID REVEALED BY HIGH-RESOLUTION X-RAY CRYSTALLOGRAPHY
Descriptor:NON-SPECIFIC LIPID TRANSFER PROTEIN, RICINOLEIC ACID, FORMIC ACID
Authors:Han, G.W., Lee, J.Y., Song, H.K., Shin, D.H., Suh, S.W.
Deposit date:2000-08-09
Release date:2001-06-06
Last modified:2017-10-04
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structural basis of non-specific lipid binding in maize lipid-transfer protein complexes revealed by high-resolution X-ray crystallography.
J.Mol.Biol., 308, 2001
9BNA
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RE-REFINEMENT OF THE B-DODECAMER D(CGCGAATTCGCG) WITH A COMPARATIVE ANALYSIS OF THE SOLVENT IN IT AND IN THE Z-HEXAMER D(5BRCG5BRCG5BRCG)
Descriptor:DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3')
Authors:Westhof, E.
Deposit date:1990-02-01
Release date:1991-04-15
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Re-refinement of the B-dodecamer d(CGCGAATTCGCG) with a comparative analysis of the solvent in it and in the Z-hexamer d(5BrCG5BrCG5BrCG).
J.Biomol.Struct.Dyn., 5, 1987
126D
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CRYSTAL STRUCTURE OF CATGGCCATG AND ITS IMPLICATIONS FOR A-TRACT BENDING MODELS
Descriptor:DNA (5'-D(*CP*AP*TP*GP*GP*CP*CP*AP*TP*G)-3')
Authors:Goodsell, D.S., Kopka, M.L., Cascio, D., Dickerson, R.E.
Deposit date:1993-06-14
Release date:1993-10-15
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of CATGGCCATG and its implications for A-tract bending models.
Proc.Natl.Acad.Sci.USA, 90, 1993
1D62
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THE STRUCTURE OF A /B-DNA$ DECAMER WITH AN I(SLASH)*A MISMATCH AND COMPARISON WITH THE G(SLASH)*A MISMATCH
Descriptor:5'-D(*CP*CP*AP*AP*IP*AP*TP*TP*GP*G)-3'
Authors:Lipanov, A., Kopka, M.L., Kaczor-Grzeskowiak, M., Dickerson, R.E.
Deposit date:1992-03-01
Release date:1993-07-15
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structure of the B-DNA decamer C-C-A-A-C-I-T-T-G-G in two different space groups: conformational flexibility of B-DNA.
Biochemistry, 32, 1993
1JE8
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TWO-COMPONENT RESPONSE REGULATOR NARL/DNA COMPLEX: DNA BENDING FOUND IN A HIGH AFFINITY SITE
Descriptor:5'-D(*CP*GP*TP*AP*CP*CP*CP*AP*TP*TP*AP*AP*TP*GP*GP*GP*TP*AP*CP*G)-3', Nitrate/Nitrite Response Regulator Protein NARL, SULFATE ION
Authors:Maris, A.E., Sawaya, M.R., Kaczor-Grzeskowiak, M., Jarvis, M.R., Bearson, S.M.D., Kopka, M.L., Schroder, I., Gunsalus, R.P., Dickerson, R.E.
Deposit date:2001-06-15
Release date:2002-09-27
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.12 Å)
Cite:Dimerization allows DNA target site recognition by the NarL response regulator.
Nat.Struct.Biol., 9, 2002
1D60
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THE STRUCTURE OF THE B-DNA DECAMER C-C-A-A-C-I-T-T-G-G: TRIGONAL FORM
Descriptor:DNA (5'-D(*CP*CP*AP*AP*CP*IP*TP*TP*GP*G)-3'), MAGNESIUM ION
Authors:Lipanov, A., Kopka, M.L., Kaczor-Grzeskowiak, M., Quintana, J., Dickerson, R.E.
Deposit date:1992-02-26
Release date:1993-04-15
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structure of the B-DNA decamer C-C-A-A-C-I-T-T-G-G in two different space groups: conformational flexibility of B-DNA.
Biochemistry, 32, 1993
8BNA
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BINDING OF HOECHST 33258 TO THE MINOR GROOVE OF B-DNA
Descriptor:DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3'), 2'-(4-HYDROXYPHENYL)-5-(4-METHYL-1-PIPERAZINYL)-2,5'-BI-BENZIMIDAZOLE, MAGNESIUM ION
Authors:Pjura, P.E., Grzeskowiak, K., Dickerson, R.E.
Deposit date:1986-08-29
Release date:1987-01-15
Last modified:2014-07-02
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Binding of Hoechst 33258 to the minor groove of B-DNA.
J.Mol.Biol., 197, 1987
6BNA
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BINDING OF AN ANTITUMOR DRUG TO DNA. NETROPSIN AND C-G-C-G-A-A-T-T-BRC-G-C-G
Descriptor:DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*(CBR)P*GP*CP*G)-3'), NETROPSIN
Authors:Kopka, M.L., Yoon, C., Goodsell, D., Pjura, P., Dickerson, R.E.
Deposit date:1984-08-30
Release date:1984-10-29
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.21 Å)
Cite:Binding of an antitumor drug to DNA, Netropsin and C-G-C-G-A-A-T-T-BrC-G-C-G.
J.Mol.Biol., 183, 1985
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