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3SSF
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CRYSTAL STRUCTURE OF RNA:DNA DODECAMER CORRESPONDING TO HIV-1 POLYPURINE TRACT, AT 1.6 A RESOLUTION.
Descriptor:5'-R(*UP*AP*AP*AP*AP*GP*AP*AP*AP*AP*GP*G)-3', 5'-D(*CP*CP*TP*TP*TP*TP*CP*TP*TP*TP*TP*A)-3', MAGNESIUM ION
Authors:Drozdzal, P., Michalska, K., Kierzek, R., Lomozik, L., Jaskolski, M.
Deposit date:2011-07-08
Release date:2012-02-08
Last modified:2012-03-28
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Structure of an RNA/DNA dodecamer corresponding to the HIV-1 polypurine tract at 1.6 Angstrom resolution
Acta Crystallogr.,Sect.D, 68, 2012
1VTJ
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MOLECULAR STRUCTURE OF THE NETROPSIN-D(CGCGATATCGCG) COMPLEX: DNA CONFORMATION IN AN ALTERNATING AT SEGMENT; CONFORMATION 1
Descriptor:DNA (5'-D(*CP*GP*CP*GP*AP*TP*AP*TP*CP*GP*CP*G)-3'), NETROPSIN
Authors:Coll, M., Aymami, J., Van Der Marel, G.A., Van Boom, J.H., Rich, A., Wang, A.H.-J.
Deposit date:1999-09-14
Release date:2011-07-13
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Molecular Structure of the Netropsin-d(CGCGATATCGCG) Complex: DNA Conformation in an Alternating AT Segment
Biochemistry, 28, 1989
1ZG1
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NARL COMPLEXED TO NIRB PROMOTER NON-PALINDROMIC TAIL-TO-TAIL DNA SITE
Descriptor:5'-D(*CP*GP*TP*AP*CP*TP*CP*CP*TP*TP*AP*AP*TP*GP*GP*GP*TP*AP*CP*G)-3', 5'-D(*CP*GP*TP*AP*CP*CP*CP*AP*TP*TP*AP*AP*GP*GP*AP*GP*TP*AP*CP*G)-3', Nitrate/nitrite response regulator protein narL, ...
Authors:Maris, A.E., Kaczor-Grzeskowiak, M., Ma, Z., Kopka, M.L., Gunsalus, R.P., Dickerson, R.E.
Deposit date:2005-04-20
Release date:2005-11-22
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Primary and Secondary Modes of DNA Recognition by the NarL Two-Component Response Regulator.
Biochemistry, 44, 2005
1ZG5
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NARL COMPLEXED TO NARG-89 PROMOTER PALINDROMIC TAIL-TO-TAIL DNA SITE
Descriptor:5'-D(*CP*GP*TP*AP*CP*CP*CP*CP*TP*AP*TP*AP*GP*GP*GP*GP*TP*AP*CP*G)-3', Nitrate/nitrite response regulator protein narL, SULFATE ION
Authors:Maris, A.E., Kaczor-Grzeskowiak, M., Ma, Z., Kopka, M.L., Gunsalus, R.P., Dickerson, R.E.
Deposit date:2005-04-20
Release date:2005-11-22
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Primary and Secondary Modes of DNA Recognition by the NarL Two-Component Response Regulator.
Biochemistry, 44, 2005
1SK5
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THE ULTRA-HIGH RESOLUTION STRUCTURE OF D(CTTTTAAAAG)2: MODULATION OF BENDING BY T-A STEPS AND ITS ROLE IN DNA RECOGNITION
Descriptor:5'-D(*CP*TP*TP*TP*TP*AP*AP*AP*AP*G)-3', CALCIUM ION
Authors:Han, G.W., Langs, D., Kopka, M.L., Dickerson, R.E.
Deposit date:2004-03-04
Release date:2005-06-21
Last modified:2018-02-14
Method:X-RAY DIFFRACTION (0.89 Å)
Cite:The ultra-high resolution structure of d(CTTTTAAAAG)2: modulation of bending by T-A steps and its role in DNA recognition
To be Published
1PJG
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RNA/DNA HYBRID DECAMER OF CAAAGAAAAG/CTTTTCTTTG
Descriptor:5'-R(*CP*AP*AP*AP*GP*AP*AP*AP*AP*G)-3', 5'-D(*CP*TP*TP*TP*TP*CP*TP*TP*TP*G)-3', CALCIUM ION
Authors:Kopka, M.L., Lavelle, L., Han, G.W., Ng, H.-L., Dickerson, R.E.
Deposit date:2003-06-02
Release date:2003-12-09
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.15 Å)
Cite:An unusual sugar conformation in the structure of an RNA/DNA decamer of the polypurine tract may affect recognition by RNase H.
J.Mol.Biol., 334, 2003
1PJO
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CRYSTAL STRUCTURE OF AN RNA/DNA HYBRID OF HIV-1 PPT
Descriptor:5'-R(*CP*AP*AP*AP*GP*AP*AP*AP*AP*G)-3', 5'-D(*CP*TP*TP*TP*TP*CP*TP*TP*TP*G)-3', MAGNESIUM ION
Authors:Kopka, M.L., Lavelle, L., Han, G.W., Ng, H.-L., Dickerson, R.E.
Deposit date:2003-06-03
Release date:2003-12-09
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.1 Å)
Cite:An Unusual Sugar Conformation in the Structure of an RNA/DNA Decamer of the Polypurine Tract May Affect Recognition by RNase H
J.Mol.Biol., 334, 2003
1G4Q
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RNA/DNA HYBRID DECAMER OF CAAAGAAAAG/CTTTTCTTTG
Descriptor:5'-R(*CP*AP*AP*AP*GP*AP*AP*AP*AP*G)-3', 5'-D(*CP*TP*TP*TP*TP*CP*TP*TP*TP*G)-3', CALCIUM ION, ...
Authors:Han, G.W.
Deposit date:2000-10-27
Release date:2003-07-08
Last modified:2017-10-04
Method:X-RAY DIFFRACTION (1.15 Å)
Cite:Direct-methods determination of an RNA/DNA hybrid decamer at 1.15 A resolution.
Acta Crystallogr.,Sect.D, 57, 2001
1JB8
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THE CRYSTAL STRUCTURE OF AN RNA/DNA HYBRID REVEALS NOVEL INTERMOLECULAR INTERCALATION
Descriptor:5'-R(*CP*AP*AP*AP*GP*AP*AP*AP*AP*G)-3', 5'-D(*CP*TP*TP*TP*TP*CP*TP*TP*TP*G)-3'
Authors:Han, G.W., Kopka, M.L., Langs, D., Dickerson, R.E.
Deposit date:2001-06-02
Release date:2003-07-01
Last modified:2017-10-04
Method:X-RAY DIFFRACTION (2.38 Å)
Cite:Crystal structure of an RNADNA hybrid reveals intermolecular intercalation: Dimer formation by base-pair swapping
Proc.Natl.Acad.Sci.USA, 100, 2003
1JE8
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TWO-COMPONENT RESPONSE REGULATOR NARL/DNA COMPLEX: DNA BENDING FOUND IN A HIGH AFFINITY SITE
Descriptor:5'-D(*CP*GP*TP*AP*CP*CP*CP*AP*TP*TP*AP*AP*TP*GP*GP*GP*TP*AP*CP*G)-3', Nitrate/Nitrite Response Regulator Protein NARL, SULFATE ION
Authors:Maris, A.E., Sawaya, M.R., Kaczor-Grzeskowiak, M., Jarvis, M.R., Bearson, S.M.D., Kopka, M.L., Schroder, I., Gunsalus, R.P., Dickerson, R.E.
Deposit date:2001-06-15
Release date:2002-09-27
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.12 Å)
Cite:Dimerization allows DNA target site recognition by the NarL response regulator.
Nat.Struct.Biol., 9, 2002
1FK0
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STRUCTURAL BASIS OF NON-SPECIFIC LIPID BINDING IN MAIZE LIPID-TRANSFER PROTEIN COMPLEXES WITH CAPRIC ACID REVEALED BY HIGH-RESOLUTION X-RAY CRYSTALLOGRAPHY
Descriptor:NONSPECIFIC LIPID-TRANSFER PROTEIN, DECANOIC ACID, FORMIC ACID
Authors:Han, G.W., Lee, J.Y., Song, H.K., Shin, D.H., Suh, S.W.
Deposit date:2000-08-08
Release date:2001-06-06
Last modified:2017-10-04
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural basis of non-specific lipid binding in maize lipid-transfer protein complexes revealed by high-resolution X-ray crystallography.
J.Mol.Biol., 308, 2001
1FK1
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STRUCTURAL BASIS OF NON-SPECIFIC LIPID BINDING IN MAIZE LIPID-TRANSFER PROTEIN COMPLEXES WITH LAURIC ACID REVEALED BY HIGH-RESOLUTION X-RAY CRYSTALLOGRAPHY
Descriptor:NON-SPECIFIC LIPID TRANSFER PROTEIN, LAURIC ACID, FORMIC ACID
Authors:Han, G.W., Lee, J.Y., Song, H.K., Shin, D.H., Suh, S.W.
Deposit date:2000-08-09
Release date:2001-06-06
Last modified:2017-10-04
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural basis of non-specific lipid binding in maize lipid-transfer protein complexes revealed by high-resolution X-ray crystallography.
J.Mol.Biol., 308, 2001
1FK2
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STRUCTURAL BASIS OF NON-SPECIFIC LIPID BINDING IN MAIZE LIPID-TRANSFER PROTEIN COMPLEXES WITH MYRISTIC ACID REVEALED BY HIGH-RESOLUTION X-RAY CRYSTALLOGRAPHY
Descriptor:NONSPECIFIC LIPID-TRANSFER PROTEIN, MYRISTIC ACID, FORMIC ACID
Authors:Han, G.W., Lee, J.Y., Song, H.K., Shin, D.H., Suh, S.W.
Deposit date:2000-08-09
Release date:2001-06-06
Last modified:2017-10-04
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural basis of non-specific lipid binding in maize lipid-transfer protein complexes revealed by high-resolution X-ray crystallography.
J.Mol.Biol., 308, 2001
1FK3
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STRUCTURAL BASIS OF NON-SPECIFIC LIPID BINDING IN MAIZE LIPID-TRANSFER PROTEIN COMPLEXES WITH PALMITOLEIC ACID REVEALED BY HIGH-RESOLUTION X-RAY CRYSTALLOGRAPHY
Descriptor:NONSPECIFIC LIPID-TRANSFER PROTEIN, PALMITOLEIC ACID, FORMIC ACID
Authors:Han, G.W., Lee, J.Y., Song, H.K., Shin, D.H., Suh, S.W.
Deposit date:2000-08-09
Release date:2001-06-06
Last modified:2017-10-04
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural basis of non-specific lipid binding in maize lipid-transfer protein complexes revealed by high-resolution X-ray crystallography.
J.Mol.Biol., 308, 2001
1FK4
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STRUCTURAL BASIS OF NON-SPECIFIC LIPID BINDING IN MAIZE LIPID-TRANSFER PROTEIN COMPLEXES WITH STEARIC ACID REVEALED BY HIGH-RESOLUTION X-RAY CRYSTALLOGRAPHY
Descriptor:NONSPECIFIC LIPID-TRANSFER PROTEIN, STEARIC ACID, FORMIC ACID
Authors:Han, G.W., Lee, J.Y., Song, H.K., Shin, D.H., Suh, S.W.
Deposit date:2000-08-09
Release date:2001-06-06
Last modified:2017-10-04
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural basis of non-specific lipid binding in maize lipid-transfer protein complexes revealed by high-resolution X-ray crystallography.
J.Mol.Biol., 308, 2001
1FK5
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STRUCTURAL BASIS OF NON-SPECIFIC LIPID BINDING IN MAIZE LIPID-TRANSFER PROTEIN COMPLEXES WITH OLEIC ACID REVEALED BY HIGH-RESOLUTION X-RAY CRYSTALLOGRAPHY
Descriptor:NONSPECIFIC LIPID-TRANSFER PROTEIN, OLEIC ACID, FORMIC ACID
Authors:Han, G.W., Lee, J.Y., Song, H.K., Shin, D.H., Suh, S.W.
Deposit date:2000-08-09
Release date:2001-06-06
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Structural basis of non-specific lipid binding in maize lipid-transfer protein complexes revealed by high-resolution X-ray crystallography.
J.Mol.Biol., 308, 2001
1FK6
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STRUCTURAL BASIS OF NON-SPECIFIC LIPID BINDING IN MAIZE LIPID-TRANSFER PROTEIN COMPLEXES WITH ALPHA-LINOLENIC ACID REVEALED BY HIGH-RESOLUTION X-RAY CRYSTALLOGRAPHY
Descriptor:NON-SPECIFIC LIPID TRANSFER PROTEIN, ALPHA-LINOLENIC ACID, FORMIC ACID
Authors:Han, G.W., Lee, J.Y., Song, H.K., Shin, D.H., Suh, S.W.
Deposit date:2000-08-09
Release date:2001-06-06
Last modified:2017-10-04
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structural basis of non-specific lipid binding in maize lipid-transfer protein complexes revealed by high-resolution X-ray crystallography.
J.Mol.Biol., 308, 2001
1FK7
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STRUCTURAL BASIS OF NON-SPECIFIC LIPID BINDING IN MAIZE LIPID-TRANSFER PROTEIN COMPLEXES WITH RICINOLEIC ACID REVEALED BY HIGH-RESOLUTION X-RAY CRYSTALLOGRAPHY
Descriptor:NON-SPECIFIC LIPID TRANSFER PROTEIN, RICINOLEIC ACID, FORMIC ACID
Authors:Han, G.W., Lee, J.Y., Song, H.K., Shin, D.H., Suh, S.W.
Deposit date:2000-08-09
Release date:2001-06-06
Last modified:2017-10-04
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structural basis of non-specific lipid binding in maize lipid-transfer protein complexes revealed by high-resolution X-ray crystallography.
J.Mol.Biol., 308, 2001
1DC0
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CRYSTAL STRUCTURE OF AN A/B-DNA INTERMEDIATE CATGGGCCCATG
Descriptor:DNA (5'-D(*CP*AP*TP*GP*GP*GP*CP*CP*CP*AP*TP*G)-3')
Authors:Ng, H.L., Kopka, M.L., Dickerson, R.E.
Deposit date:1999-11-03
Release date:2000-03-06
Last modified:2017-02-01
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:The structure of a stable intermediate in the A ;-> B DNA helix transition
Proc.Natl.Acad.Sci.USA, 97, 2000
334D
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DEFINING GC-SPECIFICITY IN THE MINOR GROOVE: SIDE-BY-SIDE BINDING OF THE DI-IMIDAZOLE LEXITROPSIN TO C-A-T-G-G-C-C-A-T-G
Descriptor:DNA (5'-D(*CP*AP*TP*GP*GP*CP*CP*AP*TP*G)-3'), DIIMIDAZOLE LEXITROPSIN, CALCIUM ION
Authors:Kopka, M.L., Goodsell, D.S., Dickerson, R.E.
Deposit date:1997-05-22
Release date:1997-08-29
Last modified:2018-04-04
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Defining GC-specificity in the minor groove: side-by-side binding of the di-imidazole lexitropsin to C-A-T-G-G-C-C-A-T-G.
Structure, 5, 1997
307D
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STRUCTURE OF A DNA ANALOG OF THE PRIMER FOR HIV-1 RT SECOND STRAND SYNTHESIS
Descriptor:DNA (5'-D(*CP*AP*AP*AP*GP*AP*AP*AP*AP*G)-3'), DNA (5'-D(*CP*TP*TP*TP*TP*CP*TP*TP*TP*G)-3')
Authors:Han, G.W., Kopka, M.L., Cascio, D., Grzeskowiak, K., Dickerson, R.E.
Deposit date:1997-01-07
Release date:1997-01-27
Last modified:2018-04-04
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Structure of a DNA analog of the primer for HIV-1 RT second strand synthesis.
J.Mol.Biol., 269, 1997
1LEX
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STRUCTURE OF A DICATIONIC MONOIMIDAZOLE LEXITROPSIN BOUND TO DNA (ORIENTATION 1)
Descriptor:DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3'), MONOIMIDAZOLE LEXITROPSIN
Authors:Goodsell, D.S., Ng, H.L., Kopka, M.L., Lown, J.W., Dickerson, R.E.
Deposit date:1995-10-10
Release date:1996-04-03
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Structure of a dicationic monoimidazole lexitropsin bound to DNA.
Biochemistry, 34, 1995
1LEY
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STRUCTURE OF A DICATIONIC MONOIMIDAZOLE LEXITROPSIN BOUND TO DNA (ORIENTATION 2)
Descriptor:DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3'), MONOIMIDAZOLE LEXITROPSIN
Authors:Goodsell, D.S., Ng, H.L., Kopka, M.L., Lown, J.W., Dickerson, R.E.
Deposit date:1995-10-10
Release date:1996-04-03
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Structure of a dicationic monoimidazole lexitropsin bound to DNA.
Biochemistry, 34, 1995
101D
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REFINEMENT OF NETROPSIN BOUND TO DNA: BIAS AND FEEDBACK IN ELECTRON DENSITY MAP INTERPRETATION
Descriptor:DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*(CBR)P*GP*CP*G)-3'), MAGNESIUM ION, NETROPSIN
Authors:Goodsell, D.S., Kopka, M.L., Dickerson, R.E.
Deposit date:1994-12-14
Release date:1995-02-27
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Refinement of netropsin bound to DNA: bias and feedback in electron density map interpretation.
Biochemistry, 34, 1995
274D
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CRYSTAL STRUCTURE OF A COVALENT DNA-DRUG ADDUCT: ANTHRAMYCIN BOUND TO C-C-A-A-C-G-T-T-G-G, AND A MOLECULAR EXPLANATION OF SPECIFICITY
Descriptor:DNA (5'-D(*CP*CP*AP*AP*CP*GP*TP*TP*(DRUG)GP*G)-3'), ANTHRAMYCIN
Authors:Kopka, M.L., Goodsell, D.S., Baikalov, I., Grzeskowiak, K., Cascio, D., Dickerson, R.E.
Deposit date:1994-04-28
Release date:1994-10-21
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structure of a covalent DNA-drug adduct: anthramycin bound to C-C-A-A-C-G-T-T-G-G and a molecular explanation of specificity.
Biochemistry, 33, 1994
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