6A8K
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3VN3
| Fungal antifreeze protein exerts hyperactivity by constructing an inequable beta-helix | Descriptor: | 1,2-ETHANEDIOL, Antifreeze protein | Authors: | Kondo, H, Xiao, N, Hanada, Y, Sugimoto, H, Hoshino, T, Garnham, C.P, Davies, P.L, Tsuda, S. | Deposit date: | 2011-12-21 | Release date: | 2012-06-06 | Last modified: | 2013-07-17 | Method: | X-RAY DIFFRACTION (0.95 Å) | Cite: | Ice-binding site of snow mold fungus antifreeze protein deviates from structural regularity and high conservation Proc.Natl.Acad.Sci.USA, 109, 2012
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1J05
| The crystal structure of anti-carcinoembryonic antigen monoclonal antibody T84.66 Fv fragment | Descriptor: | GLYCEROL, PHOSPHATE ION, anti-CEA mAb T84.66, ... | Authors: | Kondo, H, Nishimura, Y, Shiroishi, M, Asano, R, Noro, N, Tsumoto, K, Kumagai, I. | Deposit date: | 2002-11-01 | Release date: | 2003-12-16 | Last modified: | 2023-12-27 | Method: | X-RAY DIFFRACTION (1.5 Å) | Cite: | The crystal structure of anti-carcinoembryonic antigen monoclonal antibody T84.66 Fv fragment To be Published
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2YQU
| Crystal structures and evolutionary relationship of two different lipoamide dehydrogenase(E3s) from Thermus thermophilus | Descriptor: | 2-oxoglutarate dehydrogenase E3 component, CARBONATE ION, FLAVIN-ADENINE DINUCLEOTIDE, ... | Authors: | Kondo, H, Hossain, M.T, Adachi, W, Nakai, T, Kamiya, N, Kuramitsu, K. | Deposit date: | 2007-03-31 | Release date: | 2008-04-01 | Last modified: | 2023-10-25 | Method: | X-RAY DIFFRACTION (1.7 Å) | Cite: | Crystal structures and evolutionary relationship of two different lipoamide dehydrogenase(E3s) from Thermus thermophilus To be Published
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7C3H
| Structure of L-lysine oxidase in complex with L-lysine | Descriptor: | 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, FLAVIN-ADENINE DINUCLEOTIDE, GLYCEROL, ... | Authors: | Kondo, H, Kitagawa, M, Sugiyama, S, Imada, K. | Deposit date: | 2020-05-12 | Release date: | 2020-09-23 | Last modified: | 2023-11-29 | Method: | X-RAY DIFFRACTION (1.7 Å) | Cite: | Structural basis of strict substrate recognition of l-lysine alpha-oxidase from Trichoderma viride. Protein Sci., 29, 2020
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2DHT
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1C08
| CRYSTAL STRUCTURE OF HYHEL-10 FV-HEN LYSOZYME COMPLEX | Descriptor: | ANTI-HEN EGG WHITE LYSOZYME ANTIBODY (HYHEL-10), LYSOZYME | Authors: | Shiroishi, M, Kondo, H, Matsushima, M, Tsumoto, K, Kumagai, I. | Deposit date: | 1999-07-15 | Release date: | 2000-07-19 | Last modified: | 2023-05-31 | Method: | X-RAY DIFFRACTION (2.3 Å) | Cite: | Crystal structure of anti-Hen egg white lysozyme antibody (HyHEL-10) Fv-antigen complex. Local structural changes in the protein antigen and water-mediated interactions of Fv-antigen and light chain-heavy chain interfaces. J.Biol.Chem., 274, 1999
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2DCZ
| Thermal Stabilization of Bacillus subtilis Family-11 Xylanase By Directed Evolution | Descriptor: | 1,4-DIETHYLENE DIOXIDE, Endo-1,4-beta-xylanase A, SULFATE ION | Authors: | Kondo, H, Miyazaki, K, Takenouchi, M, Noro, N, Suzuki, M, Tsuda, S. | Deposit date: | 2006-01-18 | Release date: | 2006-02-07 | Last modified: | 2023-10-25 | Method: | X-RAY DIFFRACTION (1.9 Å) | Cite: | Thermal Stabilization of Bacillus subtilis Family-11 Xylanase by Directed Evolution J.Biol.Chem., 281, 2006
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2DCY
| Crystal structure of Bacillus subtilis family-11 xylanase | Descriptor: | 1,4-DIETHYLENE DIOXIDE, D(-)-TARTARIC ACID, Endo-1,4-beta-xylanase A, ... | Authors: | Kondo, H, Miyazaki, K, Takenouchi, M, Noro, N, Suzuki, M, Tsuda, S. | Deposit date: | 2006-01-18 | Release date: | 2006-02-07 | Last modified: | 2023-10-25 | Method: | X-RAY DIFFRACTION (1.4 Å) | Cite: | Thermal Stabilization of Bacillus subtilis Family-11 Xylanase by Directed Evolution J.Biol.Chem., 281, 2006
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2E5M
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1SQJ
| Crystal Structure Analysis of Oligoxyloglucan reducing-end-specific cellobiohydrolase (OXG-RCBH) | Descriptor: | oligoxyloglucan reducing-end-specific cellobiohydrolase | Authors: | Yaoi, K, Kondo, H, Noro, N, Suzuki, M, Tsuda, S, Mitsuishi, Y. | Deposit date: | 2004-03-19 | Release date: | 2004-07-20 | Last modified: | 2011-07-13 | Method: | X-RAY DIFFRACTION (2.2 Å) | Cite: | Tandem Repeat of a Seven-Bladed beta-Propeller Domain in Oligoxyloglucan Reducing-End-Specific Cellobiohydrolase Structure, 12, 2004
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1UAC
| Crystal Structure of HYHEL-10 FV MUTANT SFSF Complexed with TURKEY WHITE LYSOZYME | Descriptor: | Ig VH,anti-lysozyme, Lysozyme C, lysozyme binding Ig kappa chain V23-J2 region | Authors: | Kumagai, I, Nishimiya, Y, Kondo, H, Tsumoto, K. | Deposit date: | 2003-03-08 | Release date: | 2004-03-23 | Last modified: | 2023-12-27 | Method: | X-RAY DIFFRACTION (1.7 Å) | Cite: | Structural consequences of target epitope-directed functional alteration of an antibody. The case of anti-hen lysozyme antibody, HyHEL-10 J.BIOL.CHEM., 278, 2003
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1E32
| Structure of the N-Terminal domain and the D1 AAA domain of membrane fusion ATPase p97 | Descriptor: | ADENOSINE-5'-DIPHOSPHATE, P97 | Authors: | Zhang, X, Shaw, A, Bates, P.A, Gorman, M.A, Kondo, H, Dokurno, P, Leonard M, G, Sternberg, J.E, Freemont, P.S. | Deposit date: | 2000-06-05 | Release date: | 2001-05-31 | Last modified: | 2019-07-24 | Method: | X-RAY DIFFRACTION (2.9 Å) | Cite: | Structure of the Aaa ATPase P97 Mol.Cell, 6, 2000
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1IC4
| CRYSTAL STRUCTURE OF HYHEL-10 FV MUTANT(HD32A)-HEN LYSOZYME COMPLEX | Descriptor: | IGG1 FAB CHAIN H, LYSOZYME BINDING IG KAPPA CHAIN, LYSOZYME C | Authors: | Shiroishi, M, Yokota, A, Tsumoto, K, Kondo, H, Nishimiya, Y, Horii, K, Matsushima, M, Ogasahara, K, Yutani, K, Kumagai, I. | Deposit date: | 2001-03-30 | Release date: | 2001-07-18 | Last modified: | 2021-11-10 | Method: | X-RAY DIFFRACTION (2.5 Å) | Cite: | Structural evidence for entropic contribution of salt bridge formation to a protein antigen-antibody interaction: the case of hen lysozyme-HyHEL-10 Fv complex. J.Biol.Chem., 276, 2001
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1I42
| NMR STRUCTURE OF THE UBX DOMAIN FROM P47 | Descriptor: | P47 | Authors: | Yuan, X, Shaw, A, Zhang, X, Kondo, H, Lally, J, Freemont, P.S, Matthews, S. | Deposit date: | 2001-02-19 | Release date: | 2001-08-29 | Last modified: | 2022-02-23 | Method: | SOLUTION NMR | Cite: | Solution structure and interaction surface of the C-terminal domain from p47: a major p97-cofactor involved in SNARE disassembly. J.Mol.Biol., 311, 2001
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1IC7
| CRYSTAL STRUCTURE OF HYHEL-10 FV MUTANT(HD32A99A)-HEN LYSOZYME COMPLEX | Descriptor: | IGG1 FAB CHAIN H, LYSOZYME BINDING IG KAPPA CHAIN, LYSOZYME C | Authors: | Shiroishi, M, Yokota, A, Tsumoto, K, Kondo, H, Nishimiya, Y, Horii, K, Matsushima, M, Ogasahara, K, Yutani, K, Kumagai, I. | Deposit date: | 2001-03-30 | Release date: | 2001-07-18 | Last modified: | 2021-11-10 | Method: | X-RAY DIFFRACTION (2.1 Å) | Cite: | Structural evidence for entropic contribution of salt bridge formation to a protein antigen-antibody interaction: the case of hen lysozyme-HyHEL-10 Fv complex. J.Biol.Chem., 276, 2001
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1R7R
| The crystal structure of murine p97/VCP at 3.6A | Descriptor: | ADENOSINE-5'-DIPHOSPHATE, Transitional endoplasmic reticulum ATPase | Authors: | Huyton, T, Pye, V.E, Briggs, L.C, Flynn, T.C, Beuron, F, Kondo, H, Ma, J, Zhang, X, Freemont, P.S. | Deposit date: | 2003-10-22 | Release date: | 2003-12-16 | Last modified: | 2023-08-23 | Method: | X-RAY DIFFRACTION (3.6 Å) | Cite: | The crystal structure of murine p97/VCP at 3.6A J.Struct.Biol., 144, 2003
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1S3S
| Crystal structure of AAA ATPase p97/VCP ND1 in complex with p47 C | Descriptor: | ADENOSINE-5'-DIPHOSPHATE, Transitional endoplasmic reticulum ATPase (TER ATPase) (15S Mg(2+)- ATPase p97 subunit) (Valosin containing protein) (VCP) [Contains: Valosin], p47 protein | Authors: | Dreveny, I, Kondo, H, Uchiyama, K, Shaw, A, Zhang, X, Freemont, P.S. | Deposit date: | 2004-01-14 | Release date: | 2004-03-30 | Last modified: | 2023-08-23 | Method: | X-RAY DIFFRACTION (2.9 Å) | Cite: | Structural basis of the interaction between the AAA ATPase p97/VCP and its adaptor protein p47. Embo J., 23, 2004
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2J2M
| Crystal Structure Analysis of Catalase from Exiguobacterium oxidotolerans | Descriptor: | CATALASE, PROTOPORPHYRIN IX CONTAINING FE | Authors: | Hara, I, Ichise, N, Kojima, K, Kondo, H, Ohgiya, S, Matsuyama, H, Yumoto, I. | Deposit date: | 2006-08-17 | Release date: | 2007-01-16 | Last modified: | 2023-12-13 | Method: | X-RAY DIFFRACTION (2.4 Å) | Cite: | Relationship between the Size of the Bottleneck 15 a from Iron in the Main Channel and the Reactivity of Catalase Corresponding to the Molecular Size of Substrates. Biochemistry, 46, 2007
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1ULZ
| Crystal structure of the biotin carboxylase subunit of pyruvate carboxylase | Descriptor: | pyruvate carboxylase n-terminal domain | Authors: | Kondo, S, Nakajima, Y, Sugio, S, Yong-Biao, J, Sueda, S, Kondo, H. | Deposit date: | 2003-09-18 | Release date: | 2004-03-09 | Last modified: | 2023-12-27 | Method: | X-RAY DIFFRACTION (2.2 Å) | Cite: | Structure of the biotin carboxylase subunit of pyruvate carboxylase from Aquifex aeolicus at 2.2 A resolution. Acta Crystallogr.,Sect.D, 60, 2004
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3W3D
| Crystal structure of smooth muscle G actin DNase I complex | Descriptor: | ADENOSINE-5'-TRIPHOSPHATE, Actin, gamma-enteric smooth muscle, ... | Authors: | Sakabe, N, Sakabe, K, Sasaki, K, Kondo, H, Shimomur, M. | Deposit date: | 2012-12-20 | Release date: | 2013-01-30 | Last modified: | 2020-07-29 | Method: | X-RAY DIFFRACTION (1.8 Å) | Cite: | Refined structure and solvent network of chicken gizzard G-actin DNase 1 complex at 1.8A resolution Acta Crystallogr.,Sect.A, 49, 1993
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1J1P
| Crystal structure of HyHEL-10 Fv mutant LS91A complexed with hen egg white lysozyme | Descriptor: | Ig VH,anti-lysozyme, Lysozyme C, lysozyme binding Ig kappa chain V23-J2 region | Authors: | Yokota, A, Tsumoto, K, Shiroishi, M, Kondo, H, Kumagai, I. | Deposit date: | 2002-12-13 | Release date: | 2003-01-14 | Last modified: | 2023-12-27 | Method: | X-RAY DIFFRACTION (1.8 Å) | Cite: | The Role of Hydrogen Bonding via Interfacial Water Molecules in Antigen-Antibody Complexation. THE HyHEL-10-HEL INTERACTION J.BIOL.CHEM., 278, 2003
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1J1O
| Crystal Structure of HyHEL-10 Fv mutant LY50F complexed with hen egg white lysozyme | Descriptor: | Ig VH,anti-lysozyme, Lysozyme C, lysozyme binding Ig kappa chain V23-J2 region | Authors: | Yokota, A, Tsumoto, K, Shiroishi, M, Kondo, H, Kumagai, I. | Deposit date: | 2002-12-13 | Release date: | 2003-01-14 | Last modified: | 2023-12-27 | Method: | X-RAY DIFFRACTION (1.8 Å) | Cite: | The Role of Hydrogen Bonding via Interfacial Water Molecules in Antigen-Antibody Complexation. THE HyHEL-10-HEL INTERACTION J.BIOL.CHEM., 278, 2003
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1J1X
| Crystal Structure of HyHEL-10 Fv mutant LS93A complexed with hen egg white lysozyme | Descriptor: | Ig VH,anti-lysozyme, Lysozyme C, lysozyme binding Ig kappa chain V23-J2 region | Authors: | Yokota, A, Tsumoto, K, Shiroishi, M, Kondo, H, Kumagai, I. | Deposit date: | 2002-12-20 | Release date: | 2003-01-14 | Last modified: | 2023-12-27 | Method: | X-RAY DIFFRACTION (1.8 Å) | Cite: | The Role of Hydrogen Bonding via Interfacial Water Molecules in Antigen-Antibody Complexation. THE HyHEL-10-HEL INTERACTION J.BIOL.CHEM., 278, 2003
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1JRU
| NMR STRUCTURE OF THE UBX DOMAIN FROM P47 (ENERGY MINIMISED AVERAGE) | Descriptor: | p47 protein | Authors: | Yuan, X.M, Shaw, A, Zhang, X.D, Kondo, H, Lally, J, Freemont, P.S, Matthews, S.J. | Deposit date: | 2001-08-15 | Release date: | 2001-08-17 | Last modified: | 2022-02-23 | Method: | SOLUTION NMR | Cite: | Solution structure and interaction surface of the C-terminal domain from p47: a major p97-cofactor involved in SNARE disassembly. J.Mol.Biol., 311, 2001
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