Author results

3VN3
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FUNGAL ANTIFREEZE PROTEIN EXERTS HYPERACTIVITY BY CONSTRUCTING AN INEQUABLE BETA-HELIX
Descriptor:Antifreeze protein, 1,2-ETHANEDIOL
Authors:Kondo, H., Xiao, N., Hanada, Y., Sugimoto, H., Hoshino, T., Garnham, C.P., Davies, P.L., Tsuda, S.
Deposit date:2011-12-21
Release date:2012-06-06
Last modified:2013-07-17
Method:X-RAY DIFFRACTION (0.95 Å)
Cite:Ice-binding site of snow mold fungus antifreeze protein deviates from structural regularity and high conservation
Proc.Natl.Acad.Sci.USA, 109, 2012
1J05
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THE CRYSTAL STRUCTURE OF ANTI-CARCINOEMBRYONIC ANTIGEN MONOCLONAL ANTIBODY T84.66 FV FRAGMENT
Descriptor:anti-CEA mAb T84.66, light chain, heavy chain, ...
Authors:Kondo, H., Nishimura, Y., Shiroishi, M., Asano, R., Noro, N., Tsumoto, K., Kumagai, I.
Deposit date:2002-11-01
Release date:2003-12-16
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:The crystal structure of anti-carcinoembryonic antigen monoclonal antibody T84.66 Fv fragment
To be Published
2DHT
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CRYSTAL STRUCTURE OF ISOCITRATE DEHYDROGENASE FROM SULFOLOBUS TOKODAII STRAIN7
Descriptor:409aa long hypothetical NADP-dependent isocitrate dehydrogenase
Authors:Kondo, H., Murakami, M., Ihara, K., Suzuki, S., Kouyama, T.
Deposit date:2006-03-25
Release date:2007-03-27
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal structure of isocitrate dehydrogenase of Sulfolobus tokodaii strain7
To be Published
2YQU
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CRYSTAL STRUCTURES AND EVOLUTIONARY RELATIONSHIP OF TWO DIFFERENT LIPOAMIDE DEHYDROGENASE(E3S) FROM THERMUS THERMOPHILUS
Descriptor:2-oxoglutarate dehydrogenase E3 component, CARBONATE ION, FLAVIN-ADENINE DINUCLEOTIDE, ...
Authors:Kondo, H., Hossain, M.T., Adachi, W., Nakai, T., Kamiya, N., Kuramitsu, K.
Deposit date:2007-03-31
Release date:2008-04-01
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystal structures and evolutionary relationship of two different lipoamide dehydrogenase(E3s) from Thermus thermophilus
To be Published
6A8K
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CRYSTAL STRUCTURE OF ICE-BINDING PROTEIN FROM A SEA-ICE MICROALGA
Descriptor:Ice binding protein 1, GLYCEROL
Authors:Kondo, H., Bayer-Giraldi, M.
Deposit date:2018-07-09
Release date:2018-11-07
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Multiple binding modes of a moderate ice-binding protein from a polar microalga
Phys Chem Chem Phys, 20, 2018
1C08
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CRYSTAL STRUCTURE OF HYHEL-10 FV-HEN LYSOZYME COMPLEX
Descriptor:ANTI-HEN EGG WHITE LYSOZYME ANTIBODY (HYHEL-10), LYSOZYME
Authors:Shiroishi, M., Kondo, H., Matsushima, M., Tsumoto, K., Kumagai, I.
Deposit date:1999-07-15
Release date:2000-07-19
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structure of anti-Hen egg white lysozyme antibody (HyHEL-10) Fv-antigen complex. Local structural changes in the protein antigen and water-mediated interactions of Fv-antigen and light chain-heavy chain interfaces.
J.Biol.Chem., 274, 1999
2DCY
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CRYSTAL STRUCTURE OF BACILLUS SUBTILIS FAMILY-11 XYLANASE
Descriptor:Endo-1,4-beta-xylanase A, 1,4-DIETHYLENE DIOXIDE, L(+)-TARTARIC ACID, ...
Authors:Kondo, H., Miyazaki, K., Takenouchi, M., Noro, N., Suzuki, M., Tsuda, S.
Deposit date:2006-01-18
Release date:2006-02-07
Last modified:2019-07-10
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Thermal Stabilization of Bacillus subtilis Family-11 Xylanase by Directed Evolution
J.Biol.Chem., 281, 2006
2DCZ
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THERMAL STABILIZATION OF BACILLUS SUBTILIS FAMILY-11 XYLANASE BY DIRECTED EVOLUTION
Descriptor:Endo-1,4-beta-xylanase A, SULFATE ION, 1,4-DIETHYLENE DIOXIDE
Authors:Kondo, H., Miyazaki, K., Takenouchi, M., Noro, N., Suzuki, M., Tsuda, S.
Deposit date:2006-01-18
Release date:2006-02-07
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Thermal Stabilization of Bacillus subtilis Family-11 Xylanase by Directed Evolution
J.Biol.Chem., 281, 2006
2E5M
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CRYSTAL STRUCTURE OF ISOCITRATE DEHYDROGENASE FROM SULFOLOBUS TOKODAII STRAIN 7
Descriptor:409aa long hypothetical NADP-dependent isocitrate dehydrogenase, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
Authors:Kouyama, T., Kondo, H.
Deposit date:2006-12-22
Release date:2008-01-15
Last modified:2019-01-23
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Crystal Structures of the Putative Isocitrate Dehydrogenase from Sulfolobus tokodaii Strain 7 in the Apo and NADP+-Bound Forms
Archaea, 2018, 2018
1ULZ
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CRYSTAL STRUCTURE OF THE BIOTIN CARBOXYLASE SUBUNIT OF PYRUVATE CARBOXYLASE
Descriptor:pyruvate carboxylase n-terminal domain
Authors:Kondo, S., Nakajima, Y., Sugio, S., Yong-Biao, J., Sueda, S., Kondo, H.
Deposit date:2003-09-18
Release date:2004-03-09
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structure of the biotin carboxylase subunit of pyruvate carboxylase from Aquifex aeolicus at 2.2 A resolution.
Acta Crystallogr.,Sect.D, 60, 2004
2DZD
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CRYSTAL STRUCTURE OF THE BIOTIN CARBOXYLASE DOMAIN OF PYRUVATE CARBOXYLASE
Descriptor:pyruvate carboxylase
Authors:Kondo, S., Nakajima, Y., Sugio, S., Sueda, S., Islam, M.N., Kondo, H.
Deposit date:2006-09-27
Release date:2007-09-25
Last modified:2017-10-11
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structure of the biotin carboxylase domain of pyruvate carboxylase from Bacillus thermodenitrificans
ACTA CRYSTALLOGR.,SECT.D, 63, 2007
3W3D
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CRYSTAL STRUCTURE OF SMOOTH MUSCLE G ACTIN DNASE I COMPLEX
Descriptor:Actin, gamma-enteric smooth muscle, Deoxyribonuclease-1, ...
Authors:Sakabe, N., Sakabe, K., Sasaki, K., Kondo, H., Shimomur, M.
Deposit date:2012-12-20
Release date:2013-01-30
Last modified:2017-11-22
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Refined structure and solvent network of chicken gizzard G-actin DNase 1 complex at 1.8A resolution
Acta Crystallogr.,Sect.A, 49, 1993
2EBS
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CRYSTAL STRUCTURE ANAALYSIS OF OLIGOXYLOGLUCAN REDUCING-END-SPECIFIC CELLOBIOHYDROLASE (OXG-RCBH) D465N MUTANT COMPLEXED WITH A XYLOGLUCAN HEPTASACCHARIDE
Descriptor:Oligoxyloglucan reducing end-specific cellobiohydrolase, BETA-D-GLUCOSE, XYLOPYRANOSE
Authors:Yaoi, K., Kondo, H., Hiyoshi, A., Noro, N., Sugimoto, H., Miyazaki, K., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-02-09
Release date:2007-06-26
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:The Structural Basis for the Exo-mode of Action in GH74 Oligoxyloglucan Reducing End-specific Cellobiohydrolase.
J.Mol.Biol., 370, 2007
1JRU
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NMR STRUCTURE OF THE UBX DOMAIN FROM P47 (ENERGY MINIMISED AVERAGE)
Descriptor:p47 protein
Authors:Yuan, X.M., Shaw, A., Zhang, X.D., Kondo, H., Lally, J., Freemont, P.S., Matthews, S.J.
Deposit date:2001-08-15
Release date:2001-08-17
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution structure and interaction surface of the C-terminal domain from p47: a major p97-cofactor involved in SNARE disassembly.
J.Mol.Biol., 311, 2001
1SQJ
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CRYSTAL STRUCTURE ANALYSIS OF OLIGOXYLOGLUCAN REDUCING-END-SPECIFIC CELLOBIOHYDROLASE (OXG-RCBH)
Descriptor:oligoxyloglucan reducing-end-specific cellobiohydrolase
Authors:Yaoi, K., Kondo, H., Noro, N., Suzuki, M., Tsuda, S., Mitsuishi, Y.
Deposit date:2004-03-19
Release date:2004-07-20
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Tandem Repeat of a Seven-Bladed beta-Propeller Domain in Oligoxyloglucan Reducing-End-Specific Cellobiohydrolase
Structure, 12, 2004
2CZQ
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A NOVEL CUTINASE-LIKE PROTEIN FROM CRYPTOCOCCUS SP.
Descriptor:cutinase-like protein, CITRIC ACID, 1,2-ETHANEDIOL
Authors:Masaki, K., Kamini, N.R., Ikeda, H., Iefuji, H., Kondo, H., Suzuki, M., Tsuda, S.
Deposit date:2005-07-14
Release date:2006-07-14
Last modified:2012-06-13
Method:X-RAY DIFFRACTION (1.05 Å)
Cite:Crystal structure and enhanced activity of a cutinase-like enzyme from Cryptococcus sp. strain S-2
Proteins, 77, 2009
2J2M
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CRYSTAL STRUCTURE ANALYSIS OF CATALASE FROM EXIGUOBACTERIUM OXIDOTOLERANS
Descriptor:CATALASE, PROTOPORPHYRIN IX CONTAINING FE
Authors:Hara, I., Ichise, N., Kojima, K., Kondo, H., Ohgiya, S., Matsuyama, H., Yumoto, I.
Deposit date:2006-08-17
Release date:2007-01-16
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Relationship between the Size of the Bottleneck 15 a from Iron in the Main Channel and the Reactivity of Catalase Corresponding to the Molecular Size of Substrates.
Biochemistry, 46, 2007
2ZIB
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CRYSTAL STRUCTURE ANALYSIS OF CALCIUM-INDEPENDENT TYPE II ANTIFREEZE PROTEIN
Descriptor:Type II antifreeze protein, SULFATE ION
Authors:Nishimiya, Y., Sato, R., Kondo, H., Noro, N., Sugimoto, H., Suzuki, M., Tsuda, S.
Deposit date:2008-02-14
Release date:2008-08-19
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.34 Å)
Cite:Crystal structure and mutational analysis of Ca2+-independent type II antifreeze protein from longsnout poacher, Brachyopsis rostratus
J.Mol.Biol., 382, 2008
3A0F
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THE CRYSTAL STRUCTURE OF GEOTRICHUM SP. M128 XYLOGLUCANASE
Descriptor:Xyloglucanase
Authors:Yaoi, K., Kondo, H., Hiyoshi, A., Noro, N., Sugimoto, H., Tsuda, S., Miyazaki, K.
Deposit date:2009-03-16
Release date:2009-09-08
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:The crystal structure of a xyloglucan-specific endo-beta-1,4-glucanase from Geotrichum sp. M128 xyloglucanase reveals a key amino acid residue for substrate specificity
Febs J., 276, 2009
3X0V
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STRUCTURE OF L-LYSINE OXIDASE
Descriptor:L-lysine oxidase, FLAVIN-ADENINE DINUCLEOTIDE, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID
Authors:Sano, T., Uchida, Y., Amano, M., Kawaguchi, T., Kondo, H., Inagaki, K., Imada, K.
Deposit date:2014-10-22
Release date:2015-04-08
Last modified:2015-07-15
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Recombinant expression, molecular characterization and crystal structure of antitumor enzyme, l-lysine alpha-oxidase from Trichoderma viride.
J.Biochem., 157, 2015
1E32
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STRUCTURE OF THE N-TERMINAL DOMAIN AND THE D1 AAA DOMAIN OF MEMBRANE FUSION ATPASE P97
Descriptor:P97, ADENOSINE-5'-DIPHOSPHATE
Authors:Zhang, X., Shaw, A., Bates, P.A., Gorman, M.A., Kondo, H., Dokurno, P., Leonard M, G., Sternberg, J.E., Freemont, P.S.
Deposit date:2000-06-05
Release date:2001-05-31
Last modified:2019-07-24
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Structure of the Aaa ATPase P97
Mol.Cell, 6, 2000
1I42
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NMR STRUCTURE OF THE UBX DOMAIN FROM P47
Descriptor:P47
Authors:Yuan, X., Shaw, A., Zhang, X., Kondo, H., Lally, J., Freemont, P.S., Matthews, S.
Deposit date:2001-02-19
Release date:2001-08-29
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution structure and interaction surface of the C-terminal domain from p47: a major p97-cofactor involved in SNARE disassembly.
J.Mol.Biol., 311, 2001
1IC4
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CRYSTAL STRUCTURE OF HYHEL-10 FV MUTANT(HD32A)-HEN LYSOZYME COMPLEX
Descriptor:LYSOZYME BINDING IG KAPPA CHAIN, IGG1 FAB CHAIN H, LYSOZYME C
Authors:Shiroishi, M., Yokota, A., Tsumoto, K., Kondo, H., Nishimiya, Y., Horii, K., Matsushima, M., Ogasahara, K., Yutani, K., Kumagai, I.
Deposit date:2001-03-30
Release date:2001-07-18
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structural evidence for entropic contribution of salt bridge formation to a protein antigen-antibody interaction: the case of hen lysozyme-HyHEL-10 Fv complex.
J.Biol.Chem., 276, 2001
1IC5
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CRYSTAL STRUCTURE OF HYHEL-10 FV MUTANT(HD99A)-HEN LYSOZYME COMPLEX
Descriptor:LYSOZYME BINDING IG KAPPA CHAIN, IGG1 FAB CHAIN H, LYSOZYME C
Authors:Shiroishi, M., Yokota, A., Tsumoto, K., Kondo, H., Nishimiya, Y., Horii, K., Matsushima, M., Ogasahara, K., Yutani, K., Kumagai, I.
Deposit date:2001-03-30
Release date:2001-07-18
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structural evidence for entropic contribution of salt bridge formation to a protein antigen-antibody interaction: the case of hen lysozyme-HyHEL-10 Fv complex.
J.Biol.Chem., 276, 2001
1IC7
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CRYSTAL STRUCTURE OF HYHEL-10 FV MUTANT(HD32A99A)-HEN LYSOZYME COMPLEX
Descriptor:LYSOZYME BINDING IG KAPPA CHAIN, IGG1 FAB CHAIN H, LYSOZYME C
Authors:Shiroishi, M., Yokota, A., Tsumoto, K., Kondo, H., Nishimiya, Y., Horii, K., Matsushima, M., Ogasahara, K., Yutani, K., Kumagai, I.
Deposit date:2001-03-30
Release date:2001-07-18
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structural evidence for entropic contribution of salt bridge formation to a protein antigen-antibody interaction: the case of hen lysozyme-HyHEL-10 Fv complex.
J.Biol.Chem., 276, 2001
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