Author results

5XHU
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CRYSTAL STRUCTURE OF YCGT FROM BACILLUS SUBTILIS
Descriptor:Ferredoxin--NADP reductase, FLAVIN-ADENINE DINUCLEOTIDE
Authors:Komori, H.
Deposit date:2017-04-24
Release date:2018-05-02
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal structure of ycgT from bacillus subtilis
To Be Published
5B7M
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STRUCTURE OF PERDEUTERATED CUEO - THE SIGNAL PEPTIDE WAS TRUNCATED BY HRV3C PROTEASE
Descriptor:Blue copper oxidase CueO, COPPER (II) ION
Authors:Akter, M., Higuchi, Y., Shibata, N.
Deposit date:2016-06-07
Release date:2016-10-19
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Biochemical, spectroscopic and X-ray structural analysis of deuterated multicopper oxidase CueO prepared from a new expression construct for neutron crystallography
Acta Crystallogr.,Sect.F, 72, 2016
5B7F
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STRUCTURE OF CUEO - THE SIGNAL PEPTIDE WAS TRUNCATED BY HRV3C PROTEASE
Descriptor:Blue copper oxidase CueO, COPPER (II) ION, 1,2-ETHANEDIOL, ...
Authors:Akter, M., Higuchi, Y., Shibata, N.
Deposit date:2016-06-07
Release date:2016-10-19
Last modified:2018-02-07
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Biochemical, spectroscopic and X-ray structural analysis of deuterated multicopper oxidase CueO prepared from a new expression construct for neutron crystallography
Acta Crystallogr.,Sect.F, 72, 2016
5B7E
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STRUCTURE OF PERDEUTERATED CUEO
Descriptor:Blue copper oxidase CueO, COPPER (II) ION, CU-O-CU LINKAGE, ...
Authors:Akter, M., Higuchi, Y., Shibata, N.
Deposit date:2016-06-07
Release date:2016-10-19
Last modified:2018-01-24
Method:X-RAY DIFFRACTION (1.42 Å)
Cite:Biochemical, spectroscopic and X-ray structural analysis of deuterated multicopper oxidase CueO prepared from a new expression construct for neutron crystallography
Acta Crystallogr.,Sect.F, 72, 2016
5AWE
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CRYSTAL STRUCTURE OF A HYPOTHETICAL PROTEIN, TTHA0829 FROM THERMUS THERMOPHILUS HB8, COMPOSED OF CYSTATHIONINE-BETA-SYNTHASE (CBS) AND ASPARTATE-KINASE CHORISMATE-MUTASE TYRA (ACT) DOMAINS
Descriptor:Putative acetoin utilization protein, acetoin dehydrogenase
Authors:Nakabayashi, M., Shibata, N., Kanagawa, M., Nakagawa, N., Kuramitsu, S., Higuchi, Y.
Deposit date:2015-07-03
Release date:2016-05-18
Last modified:2016-09-28
Method:X-RAY DIFFRACTION (2.45 Å)
Cite:Crystal structure of a hypothetical protein, TTHA0829 from Thermus thermophilus HB8, composed of cystathionine-beta-synthase (CBS) and aspartate-kinase chorismate-mutase tyrA (ACT) domains.
Extremophiles, 20, 2016
5AUS
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HYDROGENOBACTER THERMOPHILUS CYTOCHROME C552 DIMER FORMED BY DOMAIN SWAPPING AT C-TERMINAL REGION
Descriptor:Cytochrome c-552, HEME C
Authors:Ren, C., Nagao, S., Yamanaka, M., Komori, H., Shomura, Y., Higuchi, Y., Hirota, S.
Deposit date:2015-06-08
Release date:2015-10-21
Last modified:2015-11-25
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Oligomerization enhancement and two domain swapping mode detection for thermostable cytochrome c552via the elongation of the major hinge loop.
Mol Biosyst, 11, 2015
5AUR
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HYDROGENOBACTER THERMOPHILUS CYTOCHROME C552 DIMER FORMED BY DOMAIN SWAPPING AT N-TERMINAL REGION
Descriptor:Cytochrome c-552, HEME C, IODIDE ION
Authors:Ren, C., Nagao, S., Yamanaka, M., Kamikubo, H., Komori, H., Shomura, Y., Higuchi, Y., Hirota, S.
Deposit date:2015-06-08
Release date:2015-10-21
Last modified:2015-11-25
Method:X-RAY DIFFRACTION (1.26 Å)
Cite:Oligomerization enhancement and two domain swapping mode detection for thermostable cytochrome c552via the elongation of the major hinge loop.
Mol Biosyst, 11, 2015
4ZID
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DIMERIC HYDROGENOBACTER THERMOPHILUS CYTOCHROME C552 OBTAINED FROM ESCHERICHIA COLI
Descriptor:Cytochrome c-552, HEME C
Authors:Hayashi, Y., Yamanaka, M., Nagao, S., Komori, H., Higuchi, Y., Hirota, S.
Deposit date:2015-04-28
Release date:2016-02-10
Last modified:2016-02-24
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Domain swapping oligomerization of thermostable c-type cytochrome in E. coli cells
Sci Rep, 6, 2016
4NER
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MULTICOPPER OXIDASE CUEO (DATA1)
Descriptor:Blue copper oxidase CueO, COPPER (II) ION, HYDROXIDE ION, ...
Authors:Komori, H., Kataoka, K., Sakurai, T., Higuchi, Y.
Deposit date:2013-10-30
Release date:2014-03-12
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:New insights into the catalytic active-site structure of multicopper oxidases
Acta Crystallogr.,Sect.D, 70, 2014
4HAL
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MULTICOPPER OXIDASE CUEO MUTANT E506I
Descriptor:Blue copper oxidase CueO, COPPER (II) ION, HYDROXIDE ION, ...
Authors:Komori, H., Kataoka, K., Sakurai, T., Higuchi, Y.
Deposit date:2012-09-26
Release date:2013-10-30
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Multicopper Oxidase CueO mutant E506I
TO BE PUBLISHED
4HAK
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MULTICOPPER OXIDASE CUEO MUTANT E506A
Descriptor:Blue copper oxidase CueO, COPPER (II) ION, HYDROXIDE ION, ...
Authors:Komori, H., Kataoka, K., Sakurai, T., Higuchi, Y.
Deposit date:2012-09-26
Release date:2013-10-30
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Multicopper Oxidase CueO mutant E506A
TO BE PUBLISHED
4EF3
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MULTICOPPER OXIDASE CUEO (CITRATE BUFFER)
Descriptor:Blue copper oxidase CueO, COPPER (II) ION, HYDROXIDE ION, ...
Authors:Komori, H., Kataoka, K., Sakurai, T., Higuchi, Y.
Deposit date:2012-03-29
Release date:2013-05-22
Last modified:2016-08-03
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Exogenous acetate ion reaches the type II copper centre in CueO through the water-excretion channel and potentially affects the enzymatic activity.
Acta Crystallogr.,Sect.F, 72, 2016
4E9Y
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MULTICOPPER OXIDASE MGLAC (DATA4)
Descriptor:Multicopper oxidase, COPPER (II) ION, OXYGEN MOLECULE, ...
Authors:Komori, H., Miyazaki, K., Higuchi, Y.
Deposit date:2012-03-21
Release date:2013-03-27
Last modified:2014-03-12
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:New insights into the catalytic active-site structure of multicopper oxidases
Acta Crystallogr.,Sect.D, 70, 2014
4E9X
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MULTICOPPER OXIDASE MGLAC (DATA3)
Descriptor:Multicopper oxidase, COPPER (II) ION, OXYGEN MOLECULE, ...
Authors:Komori, H., Miyazaki, K., Higuchi, Y.
Deposit date:2012-03-21
Release date:2013-03-27
Last modified:2014-03-12
Method:X-RAY DIFFRACTION (1.14 Å)
Cite:New insights into the catalytic active-site structure of multicopper oxidases
Acta Crystallogr.,Sect.D, 70, 2014
4E9W
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MULTICOPPER OXIDASE MGLAC (DATA2)
Descriptor:Multicopper oxidase, COPPER (II) ION, OXYGEN MOLECULE, ...
Authors:Komori, H., Miyazaki, K., Higuchi, Y.
Deposit date:2012-03-21
Release date:2013-03-27
Last modified:2014-03-12
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:New insights into the catalytic active-site structure of multicopper oxidases
Acta Crystallogr.,Sect.D, 70, 2014
4E9V
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MULTICOPPER OXIDASE MGLAC (DATA1)
Descriptor:Multicopper oxidase, COPPER (II) ION, OXYGEN ATOM, ...
Authors:Komori, H., Miyazaki, K., Higuchi, Y.
Deposit date:2012-03-21
Release date:2013-03-27
Last modified:2014-03-12
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:New insights into the catalytic active-site structure of multicopper oxidases
Acta Crystallogr.,Sect.D, 70, 2014
4E9T
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MULTICOPPER OXIDASE CUEO (DATA6)
Descriptor:Blue copper oxidase CueO, COPPER (II) ION, ACETATE ION
Authors:Komori, H., Kataoka, K., Sakurai, T., Higuchi, Y.
Deposit date:2012-03-21
Release date:2013-05-01
Last modified:2013-07-24
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Structure and function of the engineered multicopper oxidase CueO from Escherichia coli--deletion of the methionine-rich helical region covering the substrate-binding site.
J.Mol.Biol., 373, 2007
4E9S
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MULTICOPPER OXIDASE CUEO (DATA5)
Descriptor:Blue copper oxidase CueO, COPPER (II) ION, ACETATE ION
Authors:Komori, H., Kataoka, K., Sakurai, T., Higuchi, Y.
Deposit date:2012-03-21
Release date:2013-05-01
Last modified:2013-07-24
Method:X-RAY DIFFRACTION (1.06 Å)
Cite:Structure and function of the engineered multicopper oxidase CueO from Escherichia coli--deletion of the methionine-rich helical region covering the substrate-binding site.
J.Mol.Biol., 373, 2007
4E9R
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MULTICOPPER OXIDASE CUEO (DATA4)
Descriptor:Blue copper oxidase CueO, COPPER (II) ION, ACETATE ION
Authors:Komori, H., Kataoka, K., Sakurai, T., Higuchi, Y.
Deposit date:2012-03-21
Release date:2013-05-01
Last modified:2013-07-24
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Structure and function of the engineered multicopper oxidase CueO from Escherichia coli--deletion of the methionine-rich helical region covering the substrate-binding site.
J.Mol.Biol., 373, 2007
4E9Q
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MULTICOPPER OXIDASE CUEO (DATA2)
Descriptor:Blue copper oxidase CueO, COPPER (II) ION, ACETATE ION
Authors:Komori, H., Kataoka, K., Sakurai, T., Higuchi, Y.
Deposit date:2012-03-21
Release date:2013-05-01
Last modified:2013-07-24
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Structure and function of the engineered multicopper oxidase CueO from Escherichia coli--deletion of the methionine-rich helical region covering the substrate-binding site.
J.Mol.Biol., 373, 2007
4E1O
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HUMAN HISTIDINE DECARBOXYLASE COMPLEX WITH HISTIDINE METHYL ESTER (HME)
Descriptor:Histidine decarboxylase, PYRIDOXAL-5'-PHOSPHATE, HISTIDINE-METHYL-ESTER
Authors:Komori, H., Nitta, Y., Ueno, H., Higuchi, Y.
Deposit date:2012-03-06
Release date:2012-07-18
Last modified:2013-07-17
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural study reveals that Ser-354 determines substrate specificity on human histidine decarboxylase
J.Biol.Chem., 287, 2012
3X39
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DOMAIN-SWAPPED DIMER OF PSEUDOMONAS AERUGINOSA CYTOCHROME C551
Descriptor:Cytochrome c-551, PROTOPORPHYRIN IX CONTAINING FE
Authors:Nagao, S., Ueda, M., Osuka, H., Komori, H., Kamikubo, H., Kataoka, M., Higuchi, Y., Hirota, S.
Deposit date:2015-01-16
Release date:2015-04-22
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Domain-Swapped Dimer of Pseudomonas aeruginosa Cytochrome c551: Structural Insights into Domain Swapping of Cytochrome c Family Proteins
Plos One, 10, 2015
3X15
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DIMERIC AQUIFEX AEOLICUS CYTOCHROME C555
Descriptor:Cytochrome c552, HEME C
Authors:Yamanaka, M., Nagao, S., Komori, H., Higuchi, Y., Hirota, S.
Deposit date:2014-10-29
Release date:2015-01-28
Last modified:2015-03-04
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Change in structure and ligand binding properties of hyperstable cytochrome c555 from Aquifex aeolicus by domain swapping
Protein Sci., 24, 2015
3WUI
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DIMERIC HORSE CYTOCHROME C FORMED BY REFOLDING FROM MOLTEN GLOBULE STATE
Descriptor:Cytochrome c, PROTOPORPHYRIN IX CONTAINING FE, TETRAETHYLENE GLYCOL, ...
Authors:Deshpande, M.S., Parui, P.P., Kamikubo, H., Yamanaka, M., Nagao, S., Komori, H., Kataoka, M., Higuchi, Y., Hirota, S.
Deposit date:2014-04-25
Release date:2014-07-16
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Formation of Domain-Swapped Oligomer of Cytochrome c from Its Molten Globule State Oligomer
Biochemistry, 2014
3WC8
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DIMERIC HORSE CYTOCHROME C OBTAINED BY REFOLDING WITH DESALTING METHOD
Descriptor:Cytochrome c, PROTOPORPHYRIN IX CONTAINING FE, PHOSPHATE ION, ...
Authors:Parui, P.P., Deshpande, M.S., Nagao, S., Kamikubo, H., Komori, H., Higuchi, Y., Kataoka, M., Hirota, S.
Deposit date:2013-05-25
Release date:2013-12-11
Last modified:2013-12-18
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Formation of Oligomeric Cytochrome c during Folding by Intermolecular Hydrophobic Interaction between N- and C-Terminal alpha-Helices
Biochemistry, 52, 2013
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