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8BDU
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BU of 8bdu by Molmil
H33 variant of DoBi scaffold based on PIH1D1 N-terminal domain
Descriptor: PIH1 domain-containing protein 1
Authors:Kolenko, P, Mikulecky, P, Pham, P.N, Schneider, B.
Deposit date:2022-10-20
Release date:2023-08-16
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (2.471 Å)
Cite:Diffraction anisotropy and paired refinement: crystal structure of H33, a protein binder to interleukin 10.
J.Appl.Crystallogr., 56, 2023
2RGS
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BU of 2rgs by Molmil
FC-fragment of monoclonal antibody IGG2B from Mus musculus
Descriptor: Ig gamma-2B heavy chain, beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-6)-[2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-3)]alpha-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose
Authors:Kolenko, P, Duskova, J, Skalova, T, Dohnalek, J, Hasek, J.
Deposit date:2007-10-05
Release date:2008-10-07
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.13 Å)
Cite:New insights into intra- and intermolecular interactions of immunoglobulins: crystal structure of mouse IgG2b-Fc at 2.1-A resolution
Immunology, 126, 2008
3HUP
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BU of 3hup by Molmil
High-resolution structure of the extracellular domain of human CD69
Descriptor: CHLORIDE ION, Early activation antigen CD69, SODIUM ION
Authors:Kolenko, P, Dohnalek, J, Skalova, T, Hasek, J, Duskova, J, Vanek, O, Bezouska, K.
Deposit date:2009-06-15
Release date:2009-12-15
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.371 Å)
Cite:The high-resolution structure of the extracellular domain of human CD69 using a novel polymer
Acta Crystallogr.,Sect.F, 65, 2009
3M9Z
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BU of 3m9z by Molmil
Crystal Structure of extracellular domain of mouse NKR-P1A
Descriptor: Killer cell lectin-like receptor subfamily B member 1A, PHOSPHATE ION
Authors:Kolenko, P, Rozbesky, D, Bezouska, K, Hasek, J, Dohnalek, J.
Deposit date:2010-03-23
Release date:2011-04-06
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Molecular architecture of mouse activating NKR-P1 receptors.
J.Struct.Biol., 175, 2011
6ROR
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BU of 6ror by Molmil
REP related 18-mer DNA
Descriptor: REP related 18-mer DNA from C. hominis, STRONTIUM ION
Authors:Kolenko, P, Svoboda, J, Schneider, B.
Deposit date:2019-05-13
Release date:2020-07-08
Last modified:2021-01-20
Method:X-RAY DIFFRACTION (2.601 Å)
Cite:Structural variability of CG-rich DNA 18-mers accommodating double T-T mismatches.
Acta Crystallogr D Struct Biol, 76, 2020
6ROS
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BU of 6ros by Molmil
REP related 18-mer DNA
Descriptor: REP related 18-mer DNA from C. hominis, STRONTIUM ION
Authors:Kolenko, P, Svoboda, J, Schneider, B.
Deposit date:2019-05-13
Release date:2020-07-08
Last modified:2021-01-20
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structural variability of CG-rich DNA 18-mers accommodating double T-T mismatches.
Acta Crystallogr D Struct Biol, 76, 2020
6ROU
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BU of 6rou by Molmil
REP related 18-mer DNA
Descriptor: REP related 18-mer DNA from H. parasuis, STRONTIUM ION
Authors:Kolenko, P, Svoboda, J, Schneider, B.
Deposit date:2019-05-13
Release date:2020-07-08
Last modified:2021-01-20
Method:X-RAY DIFFRACTION (2.902 Å)
Cite:Structural variability of CG-rich DNA 18-mers accommodating double T-T mismatches.
Acta Crystallogr D Struct Biol, 76, 2020
3T3A
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BU of 3t3a by Molmil
Crystal structure of H107R mutant of extracellular domain of mouse receptor NKR-P1A
Descriptor: Killer cell lectin-like receptor subfamily B member 1A, PHOSPHATE ION
Authors:Kolenko, P, Rozbesky, D, Bezouska, K, Hasek, J, Dohnalek, J.
Deposit date:2011-07-25
Release date:2011-08-10
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structure of the H107R variant of the extracellular domain of mouse NKR-P1A at 2.3 A resolution.
Acta Crystallogr.,Sect.F, 67, 2011
4FWU
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BU of 4fwu by Molmil
Crystal structure of glutaminyl cyclase from drosophila melanogaster in space group I4
Descriptor: 1,2-ETHANEDIOL, CG32412, SULFATE ION, ...
Authors:Kolenko, P, Koch, B, Stubbs, M.T.
Deposit date:2012-07-02
Release date:2012-09-05
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structure of glutaminyl cyclase from Drosophila melanogaster in space group I4.
Acta Crystallogr.,Sect.F, 69, 2013
6F1E
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BU of 6f1e by Molmil
Crystal structure of olive flounder [Paralichthys olivaceus] interferon gamma at 2.3 Angstrom resolution
Descriptor: Interferon gamma
Authors:Kolenko, P, Kolarova, L, Zahradnik, J, Schneider, B.
Deposit date:2017-11-21
Release date:2018-05-23
Last modified:2018-05-30
Method:X-RAY DIFFRACTION (2.296 Å)
Cite:Interferons type II and their receptors R1 and R2 in fish species: Evolution, structure, and function.
Fish Shellfish Immunol., 79, 2018
6GG1
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BU of 6gg1 by Molmil
Structure of PROSS-edited human interleukin 24
Descriptor: Interleukin-24, NICKEL (II) ION, SULFATE ION
Authors:Kolenko, P, Zahradnik, J, Kolarova, L, Schneider, B.
Deposit date:2018-05-02
Release date:2019-05-15
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Flexible regions govern promiscuous binding of IL-24 to receptors IL-20R1 and IL-22R1.
Febs J., 286, 2019
7AVC
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BU of 7avc by Molmil
DoBi scaffold based on PIH1D1 N-terminal domain
Descriptor: GLYCEROL, PIH1 domain-containing protein 1, SODIUM ION
Authors:Kolenko, P, Pham, N.P, Pavlicek, J, Mikulecky, P, Schneider, B.
Deposit date:2020-11-05
Release date:2021-02-10
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.2 Å)
Cite:Protein Binder (ProBi) as a New Class of Structurally Robust Non-Antibody Protein Scaffold for Directed Evolution.
Viruses, 13, 2021
5EH1
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BU of 5eh1 by Molmil
Crystal structure of the extracellular part of receptor 2 of human interferon gamma
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, CYSTEINE, GLYCEROL, ...
Authors:Kolenko, P, Mikulecky, P, Zahradnik, J, Dohnalek, J, Koval, T, Cerny, J, Necasova, I, Schneider, B.
Deposit date:2015-10-27
Release date:2016-08-17
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structure of human interferon-gamma receptor 2 reveals the structural basis for receptor specificity.
Acta Crystallogr D Struct Biol, 72, 2016
5EPD
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BU of 5epd by Molmil
Crystal structure of Glycerol Trinitrate Reductase XdpB from Agrobacterium sp. R89-1 (Apo form)
Descriptor: Glycerol trinitrate reductase
Authors:Kolenko, P, Zahradnik, J, Zuskova, I, Cerny, J, Palyzova, A, Kyslikova, E, Schneider, B.
Deposit date:2015-11-11
Release date:2016-11-23
Last modified:2019-02-27
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:The crystal structure of XdpB, the bacterial old yellow enzyme, in an FMN-free form.
PLoS ONE, 13, 2018
4FAI
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BU of 4fai by Molmil
Crystal structure of mitochondrial isoform of glutaminyl cyclase from Drosophila melanogaster
Descriptor: 1-(3,4-dimethoxyphenyl)-3-[3-(1H-imidazol-1-yl)propyl]thiourea, CG5976, isoform B, ...
Authors:Kolenko, P, Koch, B, Ruiz-Carilo, D, Stubbs, M.T.
Deposit date:2012-05-22
Release date:2012-08-29
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Crystal Structures of Glutaminyl Cyclases (QCs) from Drosophila melanogaster Reveal Active Site Conservation between Insect and Mammalian QCs.
Biochemistry, 51, 2012
4FBE
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BU of 4fbe by Molmil
Crystal structure of the C136A/C164A variant of mitochondrial isoform of glutaminyl cyclase from Drosophila melanogaster
Descriptor: 1-(3,4-dimethoxyphenyl)-3-[3-(1H-imidazol-1-yl)propyl]thiourea, CG5976, isoform B, ...
Authors:Kolenko, P, Koch, B, Ruiz-Carilo, D, Stubbs, M.T.
Deposit date:2012-05-23
Release date:2012-08-29
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.88 Å)
Cite:Crystal Structures of Glutaminyl Cyclases (QCs) from Drosophila melanogaster Reveal Active Site Conservation between Insect and Mammalian QCs.
Biochemistry, 51, 2012
4F9U
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BU of 4f9u by Molmil
Structure of glycosylated glutaminyl cyclase from Drosophila melanogaster
Descriptor: 1-(3,4-dimethoxyphenyl)-3-[3-(1H-imidazol-1-yl)propyl]thiourea, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, CG32412, ...
Authors:Kolenko, P, Koch, B, Ruiz-Carilo, D, Stubbs, M.T.
Deposit date:2012-05-21
Release date:2012-08-29
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal Structures of Glutaminyl Cyclases (QCs) from Drosophila melanogaster Reveal Active Site Conservation between Insect and Mammalian QCs.
Biochemistry, 51, 2012
4F9V
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BU of 4f9v by Molmil
Structure of C113A/C136A mutant variant of glycosylated glutaminyl cyclase from Drosophila melanogaster
Descriptor: 1-(3,4-dimethoxyphenyl)-3-[3-(1H-imidazol-1-yl)propyl]thiourea, CG32412, DI(HYDROXYETHYL)ETHER, ...
Authors:Kolenko, P, Koch, B, Ruiz-Carilo, D, Stubbs, M.T.
Deposit date:2012-05-21
Release date:2012-08-29
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal Structures of Glutaminyl Cyclases (QCs) from Drosophila melanogaster Reveal Active Site Conservation between Insect and Mammalian QCs.
Biochemistry, 51, 2012
3CG8
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BU of 3cg8 by Molmil
Laccase from Streptomyces coelicolor
Descriptor: COPPER (II) ION, OXYGEN ATOM, TETRAETHYLENE GLYCOL, ...
Authors:Skalova, T, Dohnalek, J, Ostergaard, L.H, Ostergaard, P.R, Kolenko, P, Duskova, J, Hasek, J.
Deposit date:2008-03-05
Release date:2009-01-06
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.679 Å)
Cite:The Structure of the Small Laccase from Streptomyces coelicolor Reveals a Link between Laccases and Nitrite Reductases.
J.Mol.Biol., 385, 2009
8AQ8
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BU of 8aq8 by Molmil
FAD-dependent monooxygenase from Stenotrophomonas maltophilia
Descriptor: 1,2-ETHANEDIOL, CHLORIDE ION, DI(HYDROXYETHYL)ETHER, ...
Authors:Maly, M, Kolenko, P, Duskova, J, Skalova, T, Dohnalek, J.
Deposit date:2022-08-11
Release date:2023-07-12
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Tetracycline-modifying enzyme SmTetX from Stenotrophomonas maltophilia.
Acta Crystallogr.,Sect.F, 79, 2023
7QTA
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BU of 7qta by Molmil
S1 nuclease from Aspergillus oryzae in complex with uridine
Descriptor: 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose, Nuclease S1, ...
Authors:Adamkova, K, Koval, T, Kolenko, P, Oestergaard, L.H, Dohnalek, J.
Deposit date:2022-01-14
Release date:2022-11-09
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.06 Å)
Cite:Atomic resolution studies of S1 nuclease complexes reveal details of RNA interaction with the enzyme despite multiple lattice-translocation defects.
Acta Crystallogr D Struct Biol, 78, 2022
7QTB
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BU of 7qtb by Molmil
S1 nuclease from Aspergillus oryzae in complex with cytidine-5'-monophosphate
Descriptor: 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, ...
Authors:Adamkova, K, Koval, T, Kolenko, P, Oestergaard, L.H, Dohnalek, J.
Deposit date:2022-01-14
Release date:2022-11-09
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.04 Å)
Cite:Atomic resolution studies of S1 nuclease complexes reveal details of RNA interaction with the enzyme despite multiple lattice-translocation defects.
Acta Crystallogr D Struct Biol, 78, 2022
3KW8
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BU of 3kw8 by Molmil
Two-domain laccase from Streptomyces coelicolor at 2.3 A resolution
Descriptor: COPPER (II) ION, FE (III) ION, Putative copper oxidase, ...
Authors:Skalova, T, Dohnalek, J, Kolenko, P, Duskova, J, Stepankova, A, Hasek, J, Ostergaard, L.H, Ostergaard, P.R.
Deposit date:2009-12-01
Release date:2010-12-08
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.29 Å)
Cite:Structure of laccase from Streptomyces coelicolor after soaking with potassium hexacyanoferrate and at an improved resolution of 2.3 A
Acta Crystallogr.,Sect.F, 67, 2011
5OHF
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BU of 5ohf by Molmil
Globin sensor domain of AfGcHK (FeIII form) in complex with cyanide, partially reduced
Descriptor: CHLORIDE ION, CYANIDE ION, Globin-coupled histidine kinase, ...
Authors:Skalova, T, Kolenko, P, Dohnalek, J, Stranava, M, Martinkova, M.
Deposit date:2017-07-16
Release date:2017-11-08
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Coordination and redox state-dependent structural changes of the heme-based oxygen sensor AfGcHK associated with intraprotein signal transduction.
J. Biol. Chem., 292, 2017
5OHE
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BU of 5ohe by Molmil
Globin sensor domain of AfGcHK (FeIII form) in complex with cyanide
Descriptor: CHLORIDE ION, CYANIDE ION, Globin-coupled histidine kinase, ...
Authors:Skalova, T, Kolenko, P, Dohnalek, J, Stranava, M, Martinkova, M.
Deposit date:2017-07-16
Release date:2017-11-08
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Coordination and redox state-dependent structural changes of the heme-based oxygen sensor AfGcHK associated with intraprotein signal transduction.
J. Biol. Chem., 292, 2017

 

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