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1ROP
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BU of 1rop by Molmil
STRUCTURE OF THE COL*E1 ROP PROTEIN AT 1.7 ANGSTROMS RESOLUTION
Descriptor: ROP PROTEIN
Authors:Kokkinidis, M, Banner, D.W, Tsernoglou, D.
Deposit date:1991-04-02
Release date:1992-07-15
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structure of the ColE1 rop protein at 1.7 A resolution
J.Mol.Biol., 196, 1987
1B6Q
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BU of 1b6q by Molmil
ALANINE 31 PROLINE MUTANT OF ROP PROTEIN
Descriptor: ROP
Authors:Glykos, N, Cesareni, G, Kokkinidis, M.
Deposit date:1999-01-16
Release date:1999-07-09
Last modified:2023-08-02
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Protein plasticity to the extreme: changing the topology of a 4-alpha-helical bundle with a single amino acid substitution.
Structure Fold.Des., 7, 1999
5O6Y
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BU of 5o6y by Molmil
Crystal structure of the Bc1960 peptidoglycan N-acetylglucosamine deacetylase in complex with 4-naphthalen-1-yl-~{N}-oxidanyl-benzamide
Descriptor: 2-(2-METHOXYETHOXY)ETHANOL, 3,6,9,12,15,18,21,24,27,30,33,36,39-TRIDECAOXAHENTETRACONTANE-1,41-DIOL, 4-naphthalen-1-yl-~{N}-oxidanyl-benzamide, ...
Authors:Fadouloglou, V.E, Kotsifaki, D, Kokkinidis, M.
Deposit date:2017-06-07
Release date:2018-06-20
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.498 Å)
Cite:Crystal structure of the Bc1960 peptidoglycan N-acetylglucosamine deacetylase in complex with 4-naphthalen-1-yl-~{N}-oxidanyl-benzamide
To Be Published
4DO2
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BU of 4do2 by Molmil
Crystal Structure of the Rop protein mutant D30P/A31G at resolution 1.4 resolution.
Descriptor: Regulatory protein rop
Authors:Amprazi, M, Kapetaniou, E.G, Kokkinidis, M.
Deposit date:2012-02-09
Release date:2013-02-13
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.401 Å)
Cite:Structural plasticity of 4-alpha-helical bundles exemplified by the puzzle-like molecular assembly of the Rop protein.
Proc.Natl.Acad.Sci.USA, 111, 2014
1NKD
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BU of 1nkd by Molmil
ATOMIC RESOLUTION (1.07 ANGSTROMS) STRUCTURE OF THE ROP MUTANT <2AA>
Descriptor: ROP
Authors:Vlassi, M, Kokkinidis, M.
Deposit date:1997-09-23
Release date:1999-03-23
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.09 Å)
Cite:Structural parameters for proteins derived from the atomic resolution (1.09 A) structure of a designed variant of the ColE1 ROP protein.
Acta Crystallogr.,Sect.D, 54, 1998
3KSK
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BU of 3ksk by Molmil
Crystal Structure of single chain PvuII
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, SULFATE ION, ...
Authors:Meramveliotaki, C, Hountas, A, Eliopoulos, E, Kokkinidis, M.
Deposit date:2009-11-23
Release date:2010-04-14
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:Crystal Structure of single chain PvuII
To be Published
1GMG
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BU of 1gmg by Molmil
ALANINE 31 PROLINE MUTANT OF ROP PROTEIN, MONOCLINIC FORM
Descriptor: REGULATORY PROTEIN ROP
Authors:Glykos, N.M, Kokkinidis, M.
Deposit date:2001-09-13
Release date:2002-09-12
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structure Determination of a Small Protein Through a 23-Dimensional Molecular-Replacement Search.
Acta Crystallogr.,Sect.D, 59, 2003
2IXD
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BU of 2ixd by Molmil
Crystal structure of the putative deacetylase BC1534 from Bacillus cereus
Descriptor: ACETATE ION, LMBE-RELATED PROTEIN, ZINC ION
Authors:Fadouloglou, V.E, Bouriotis, V, Kokkinidis, M.
Deposit date:2006-07-07
Release date:2007-07-17
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal Structure of the Bczbp, a Zinc-Binding Protein from Bacillus Cereus
FEBS J., 274, 2007
1H56
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BU of 1h56 by Molmil
Structural and biochemical characterization of a new magnesium ion binding site near Tyr94 in the restriction endonuclease PvuII
Descriptor: MAGNESIUM ION, TYPE II RESTRICTION ENZYME PVUII
Authors:Spyrida, A, Matzen, C, Lanio, T, Jeltsch, A, Simoncsits, A, Athanasiadis, A, Scheuring-Vanamee, E, Kokkinidis, M, Pingoud, A.
Deposit date:2001-05-20
Release date:2003-08-07
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (3 Å)
Cite:Structural and Biochemical Characterization of a New Mg(2+) Binding Site Near Tyr94 in the Restriction Endonuclease PvuII.
J.Mol.Biol., 331, 2003
7BKF
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BU of 7bkf by Molmil
Crystal structure of WT BA3943, a CE4 family pseudoenzyme from Bacillus Anthracis
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, Putative polysaccharide deacetylase, SULFATE ION
Authors:Molfetas, A, Kokkinidis, M.
Deposit date:2021-01-15
Release date:2021-05-19
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.139 Å)
Cite:The resurrection of a dead enzyme
To Be Published
6G2U
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BU of 6g2u by Molmil
Crystal structure of the human glutamate dehydrogenase 2 (hGDH2)
Descriptor: CHLORIDE ION, Glutamate dehydrogenase 2, mitochondrial, ...
Authors:Fadouloglou, V.F, Dimovasili, C, Providaki, M, Kotsifaki, D, Sarrou, I, Plaitakis, A, Zaganas, I, Kokkinidis, M.
Deposit date:2018-03-23
Release date:2019-04-10
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.934287 Å)
Cite:Crystal structure of glutamate dehydrogenase 2, a positively selected novel human enzyme involved in brain biology and cancer pathophysiology.
J.Neurochem., 2021
6HM9
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BU of 6hm9 by Molmil
Crystal structure of a BA3943 mutant,a CE4 family pseudoenzyme with restored enzymatic activity.
Descriptor: ACETATE ION, Putative polysaccharide deacetylase, SULFATE ION
Authors:Molfetas, A, Tomatsidou, A, Kokkinidis, M.
Deposit date:2018-09-12
Release date:2019-10-09
Method:X-RAY DIFFRACTION (1.71311 Å)
Cite:The resurrection of a dead enzyme.
To Be Published
7QW5
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BU of 7qw5 by Molmil
Adenine-specific DNA methyltransferase M.BseCI complexed with AdoHcy and cognate unmethylated DNA duplex
Descriptor: Modification methylase BseCI, S-ADENOSYL-L-HOMOCYSTEINE, Unmethylated DNA duplex
Authors:Mitsikas, D.A, Kouyianou, K, Kotsifaki, D, Providaki, M, Bouriotis, V, Glykos, N.M, Kokkinidis, M.
Deposit date:2022-01-24
Release date:2023-01-25
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structure of M.BseCI DNA methyltransferase from Geobacillus stearothermophilus.
To Be Published
7QW7
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BU of 7qw7 by Molmil
Adenine-specific DNA methyltransferase M.BseCI complexed with AdoHcy and cognate fully methylated DNA duplex
Descriptor: Fully methylated DNA duplex, Modification methylase BseCI, S-ADENOSYL-L-HOMOCYSTEINE
Authors:Mitsikas, D.A, Kouyianou, K, Kotsifaki, D, Providaki, M, Bouriotis, V, Glykos, N.M, Kokkinidis, M.
Deposit date:2022-01-24
Release date:2023-01-25
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structure of M.BseCI DNA methyltransferase from Geobacillus stearothermophilus.
To Be Published
7QW6
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BU of 7qw6 by Molmil
Adenine-specific DNA methyltransferase M.BseCI complexed with AdoHcy and cognate hemimethylated DNA duplex
Descriptor: Hemimethylated DNA duplex, Modification methylase BseCI, S-ADENOSYL-L-HOMOCYSTEINE
Authors:Mitsikas, D.A, Kouyianou, K, Kotsifaki, D, Providaki, M, Bouriotis, V, Glykos, N.M, Kokkinidis, M.
Deposit date:2022-01-24
Release date:2023-01-25
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structure of M.BseCI DNA methyltransferase from Geobacillus stearothermophilus.
To Be Published
7QW8
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BU of 7qw8 by Molmil
Adenine-specific DNA methyltransferase M.BseCI
Descriptor: Modification methylase BseCI
Authors:Mitsikas, D.A, Kouyianou, K, Kotsifaki, D, Providaki, M, Bouriotis, V, Glykos, N.M, Kokkinidis, M.
Deposit date:2022-01-24
Release date:2023-01-25
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structure of M.BseCI DNA methyltransferase from Geobacillus stearothermophilus.
To Be Published
4L1G
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BU of 4l1g by Molmil
Crystal structure of the Bc1960 peptidoglycan N-acetylglucosamine deacetylase from Bacillus cereus
Descriptor: ACETATE ION, Peptidoglycan N-acetylglucosamine deacetylase, SULFATE ION
Authors:Tsalafouta, A, Fadouloglou, V.E, Kokkinidis, M.
Deposit date:2013-06-03
Release date:2014-06-04
Last modified:2023-12-06
Method:X-RAY DIFFRACTION (2.336 Å)
Cite:Unusual alpha-Carbon Hydroxylation of Proline Promotes Active-Site Maturation.
J.Am.Chem.Soc., 139, 2017
1RPO
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BU of 1rpo by Molmil
RESTORED HEPTAD PATTERN CONTINUITY DOES NOT ALTER THE FOLDING OF A 4-ALPHA-HELICAL BUNDLE
Descriptor: ROP PROTEIN
Authors:Vlassi, M, Kokkinidis, M.
Deposit date:1994-08-25
Release date:1995-02-14
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Restored heptad pattern continuity does not alter the folding of a four-alpha-helix bundle.
Nat.Struct.Biol., 1, 1994
4HD5
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BU of 4hd5 by Molmil
Crystal Structure of BC0361, a polysaccharide deacetylase from Bacillus cereus
Descriptor: ACETATE ION, Polysaccharide deacetylase, ZINC ION
Authors:Fadouloglou, V.E, Kokkinidis, M, Glykos, N.M.
Deposit date:2012-10-02
Release date:2012-10-10
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structure determination through homology modelling and torsion-angle simulated annealing: application to a polysaccharide deacetylase from Bacillus cereus.
Acta Crystallogr.,Sect.D, 69, 2013
6HPA
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BU of 6hpa by Molmil
Crystal structure of a BA3943 mutant,a CE4 family pseudoenzyme
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, Putative polysaccharide deacetylase, SULFATE ION
Authors:Molfetas, A, Tomatsidou, N, Kokkinidis, M.
Deposit date:2018-09-20
Release date:2019-10-09
Method:X-RAY DIFFRACTION (1.554 Å)
Cite:The resurrection of a dean enzyme
To Be Published
1PD5
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BU of 1pd5 by Molmil
Crystal structure of E.coli chloramphenicol acetyltransferase type I at 2.5 Angstrom resolution
Descriptor: Chloramphenicol acetyltransferase
Authors:Roidis, A, Kokkinidis, M.
Deposit date:2003-05-19
Release date:2004-06-01
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal structure of E.coli chloramphenicol acetyltransferase type I at 2.5 Angstrom resolution
To be Published
1NI0
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BU of 1ni0 by Molmil
Structure of the Y94F mutant of the restriction endonuclease PvuII
Descriptor: Type II restriction enzyme PvuII
Authors:Tucker, P.A, Kokkinidis, M, Nicolaki, S, Kotsifaki, D.
Deposit date:2002-12-20
Release date:2003-02-04
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structure of the Y94F mutant of the restriction endonuclease PvuII
To be Published
1O9Y
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BU of 1o9y by Molmil
Crystal structure of the C-terminal domain of the HrcQb protein from Pseudomonas syringae pv. phaseolicola
Descriptor: HRCQ2
Authors:Fadouloglou, V.E, Kokkinidis, M.
Deposit date:2002-12-20
Release date:2003-12-04
Last modified:2018-01-31
Method:X-RAY DIFFRACTION (2.29 Å)
Cite:Structure of Hrcqb-C, a Conserved Component of the Bacterial Type III Secretion Systems.
Proc.Natl.Acad.Sci.USA, 101, 2004
1QX8
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BU of 1qx8 by Molmil
Crystal structure of a five-residue deletion mutant of the Rop protein
Descriptor: Regulatory protein ROP
Authors:Glykos, N.M, Vlassi, M, Papanikolaou, Y, Kotsifaki, D, Cesareni, G, Kokkinidis, M.
Deposit date:2003-09-04
Release date:2004-09-28
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (2.02 Å)
Cite:Loopless Rop: structure and dynamics of an engineered homotetrameric variant of the repressor of primer protein.
Biochemistry, 45, 2006
1K0Z
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BU of 1k0z by Molmil
Crystal Structure of the PvuII endonuclease with Pr3+ and SO4 ions bound in the active site at 2.05A.
Descriptor: PRASEODYMIUM ION, SULFATE ION, Type II restriction enzyme PvuII
Authors:Spyridaki, A, Athanasiadis, A, Matzen, C, Lanio, T, Jeltsch, A, Simoncsits, A, Scheuring-Vanamee, E, Kokkinidis, M, Pingoud, A.
Deposit date:2001-09-21
Release date:2003-06-17
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:

 

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