Author results

2ZVY
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STRUCTURE OF THE PERIPLASMIC DOMAIN OF MOTB FROM SALMONELLA (CRYSTAL FORM II)
Descriptor:Chemotaxis protein motB
Authors:Kojima, S., Homma, M., Namba, K., Imada, K.
Deposit date:2008-11-26
Release date:2009-09-01
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Stator assembly and activation mechanism of the flagellar motor by the periplasmic region of MotB
Mol.Microbiol., 73, 2009
2ZVZ
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STRUCTURE OF THE PERIPLASMIC DOMAIN OF MOTB FROM SALMONELLA (CRYSTAL FORM III)
Descriptor:Chemotaxis protein motB
Authors:Imada, K., Kojima, S., Namba, K., Homma, S.
Deposit date:2008-11-26
Release date:2009-09-01
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Stator assembly and activation mechanism of the flagellar motor by the periplasmic region of MotB
Mol.Microbiol., 73, 2009
2ZOV
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STRUCTURE OF THE PERIPLASMIC DOMAIN OF MOTB FROM SALMONELLA (CRYSTAL FORM I)
Descriptor:Chemotaxis protein motB
Authors:Imada, K., Kojima, S., Namba, K., Homma, M.
Deposit date:2008-06-09
Release date:2009-06-09
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Stator assembly and activation mechanism of the flagellar motor by the periplasmic region of MotB
Mol.Microbiol., 73, 2009
5Y3Z
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STRUCTURE OF THE PERIPLASMIC DOMAIN OF THE MOTB L119P MUTANT FROM SALMONELLA (CRYSTAL FORM 1)
Descriptor:Motility protein B, ARGININE, IMIDAZOLE, ...
Authors:Takao, M., Kojima, S., Sakuma, M., Homma, M., Imada, K.
Deposit date:2017-07-31
Release date:2018-04-11
Last modified:2018-04-18
Method:X-RAY DIFFRACTION (2 Å)
Cite:The Helix Rearrangement in the Periplasmic Domain of the Flagellar Stator B Subunit Activates Peptidoglycan Binding and Ion Influx.
Structure, 26, 2018
5Y40
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STRUCTURE OF THE PERIPLASMIC DOMAIN OF THE MOTB L119P MUTANT FROM SALMONELLA (CRYSTAL FORM 2)
Descriptor:Motility protein B
Authors:Takao, M., Kojima, S., Sakuma, M., Homma, M., Imada, K.
Deposit date:2017-07-31
Release date:2018-04-11
Last modified:2018-04-18
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:The Helix Rearrangement in the Periplasmic Domain of the Flagellar Stator B Subunit Activates Peptidoglycan Binding and Ion Influx.
Structure, 26, 2018
2ZF8
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CRYSTAL STRUCTURE OF MOTY
Descriptor:Component of sodium-driven polar flagellar motor
Authors:Imada, K., Kojima, S., Namba, K., Homma, M.
Deposit date:2007-12-25
Release date:2008-07-08
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.85 Å)
Cite:Insights into the stator assembly of the Vibrio flagellar motor from the crystal structure of MotY
Proc.Natl.Acad.Sci.Usa, 105, 2008
1ITP
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SOLUTION STRUCTURE OF POIA1
Descriptor:proteinase A inhibitor 1
Authors:Sasakawa, H., Yoshinaga, S., Kojima, S., Tamura, A.
Deposit date:2002-01-23
Release date:2002-02-13
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Structure of POIA1, a homologous protein to the propeptide of subtilisin: implication for protein foldability and the function as an intramolecular chaperone.
J.Mol.Biol., 317, 2002
3WPW
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STRUCTURE OF POMBC5, A PERIPLASMIC FRAGMENT OF POMB FROM VIBRIO
Descriptor:PomB, ACETATE ION
Authors:Takao, M., Sakuma, M., Zhu, S., Homma, M., Kojima, S., Imada, K.
Deposit date:2014-01-17
Release date:2014-09-10
Last modified:2017-09-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Conformational change in the periplasmic region of the flagellar stator coupled with the assembly around the rotor
Proc. Natl. Acad. Sci. U.S.A., 111, 2014
3WPX
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STRUCTURE OF POMBC4, A PERIPLASMIC FRAGMENT OF POMB FROM VIBRIO ALGINOLYTICUS
Descriptor:PomB
Authors:Takao, M., Sakuma, M., Zhu, S., Homma, M., Kojima, S., Imada, K.
Deposit date:2014-01-17
Release date:2014-09-10
Last modified:2017-09-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Conformational change in the periplasmic region of the flagellar stator coupled with the assembly around the rotor
Proc. Natl. Acad. Sci. U.S.A., 111, 2014
6IF6
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STRUCTURE OF THE PERIPLASMIC DOMAIN OF SFLA
Descriptor:Protein SflA, GLYCEROL, PHOSPHATE ION
Authors:Nishikawa, S., Sakuma, M., Kojima, S., Homma, M., Imada, K.
Deposit date:2018-09-18
Release date:2019-05-01
Last modified:2019-05-15
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structure of the periplasmic domain of SflA involved in spatial regulation of the flagellar biogenesis of Vibrio reveals a TPR/SLR -like fold.
J. Biochem., 2019
6AHP
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STRUCTURE OF THE 58-167 FRAGMENT OF FLIL
Descriptor:Flagellar protein FliL
Authors:Takekawa, N., Isumi, M., Sakuma, M., Kojima, S., Homma, M., Imada, K.
Deposit date:2018-08-20
Release date:2019-03-06
Last modified:2019-04-03
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structure ofVibrioFliL, a New Stomatin-like Protein That Assists the Bacterial Flagellar Motor Function.
MBio, 10, 2019
6AHQ
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STRUCTURE OF THE 40-167 FRAGMENT OF FLIL
Descriptor:Flagellar protein FliL
Authors:Takekawa, N., Isumi, M., Sakuma, M., Kojima, S., Homma, M., Imada, K.
Deposit date:2018-08-20
Release date:2019-03-06
Last modified:2019-04-03
Method:X-RAY DIFFRACTION (3.398 Å)
Cite:Structure ofVibrioFliL, a New Stomatin-like Protein That Assists the Bacterial Flagellar Motor Function.
MBio, 10, 2019
1IY5
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SOLUTION STRUCTURE OF WILD TYPE OMSVP3
Descriptor:OMSVP3
Authors:Hemmi, H., Kumazaki, T., Yamazaki, T., Kojima, S., Yoshida, T., Kyogoku, Y., Katsu, M., Yokosawa, H., Miura, K., Kobayashi, Y.
Deposit date:2002-07-23
Release date:2003-03-11
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Inhibitory Specificity Change of Ovomucoid Third Domain of the Silver Pheasant upon Introduction of an Engineered Cys14-Cys39 Bond
BIOCHEMISTRY, 42, 2003
1IY6
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SOLUTION STRUCTURE OF OMSVP3 VARIANT, P14C/N39C
Descriptor:OMSVP3
Authors:Hemmi, H., Kumazaki, T., Yamazaki, T., Kojima, S., Yoshida, T., Kyogoku, Y., Katsu, M., Yokosawa, H., Miura, K., Kobayashi, Y.
Deposit date:2002-07-23
Release date:2003-03-11
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Inhibitory Specificity Change of Ovomucoid Third Domain of the Silver Pheasant upon Introduction of an Engineered Cys14-Cys39 Bond
BIOCHEMISTRY, 42, 2003
1V5I
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CRYSTAL STRUCTURE OF SERINE PROTEASE INHIBITOR POIA1 IN COMPLEX WITH SUBTILISIN BPN'
Descriptor:Subtilisin BPN', IA-1=serine proteinase inhibitor, SULFATE ION, ...
Authors:Lee, W.C., Kikkawa, M., Kojima, S., Miura, K., Tanokura, M.
Deposit date:2003-11-24
Release date:2005-03-08
Last modified:2014-11-12
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Crystal structure of serine protease inhibitor POIA1 in complex with subtilisin BPN'
To be Published
3WNZ
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CRYSTAL STRUCTURE OF BACILLUS SUBTILIS YWFE, AN L-AMINO ACID LIGASE, WITH BOUND ADP-MG-PI
Descriptor:Alanine-anticapsin ligase BacD, ADENOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, ...
Authors:Tsuda, T., Kojima, S.
Deposit date:2013-12-19
Release date:2014-05-14
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Single Mutation Alters the Substrate Specificity of l-Amino Acid Ligase
Biochemistry, 53, 2014
3WO0
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CRYSTAL STRUCTURE OF BACILLUS SUBTILIS YWFE, AN L-AMINO ACID LIGASE, WITH BOUND ADP-MG-ALA
Descriptor:Alanine-anticapsin ligase BacD, ADENOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, ...
Authors:Tsuda, T., Kojima, S.
Deposit date:2013-12-19
Release date:2014-05-14
Method:X-RAY DIFFRACTION (2 Å)
Cite:Single Mutation Alters the Substrate Specificity of l-Amino Acid Ligase
Biochemistry, 53, 2014
3WO1
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CRYSTAL STRUCTURE OF TRP332ALA MUTANT YWFE, AN L-AMINO ACID LIGASE, WITH BOUND ADP-MG-ALA
Descriptor:Alanine-anticapsin ligase BacD, ADENOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, ...
Authors:Tsuda, T., Kojima, S.
Deposit date:2013-12-19
Release date:2014-05-14
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Single Mutation Alters the Substrate Specificity of l-Amino Acid Ligase
Biochemistry, 53, 2014
3SSI
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PROTEINASE INHIBITOR SSI (STREPTOMYCES SUBTILISIN, INHIBITOR) FROM STREPTOMYCES ALBOGRISEOLUS
Descriptor:STREPTOMYCES SUBTILISIN INHIBITOR
Authors:Suzuki, T., Nonaka, T., Mitsui, Y.
Deposit date:1996-03-01
Release date:1996-08-17
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structural Modulation of the Protein Proteinase Inhibitor Ssi (Streptomyces Subtilisin Inhibitor)
To be Published
1AHK
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DER F 2, THE MAJOR MITE ALLERGEN FROM DERMATOPHAGOIDES FARINAE, NMR, MINIMIZED AVERAGE STRUCTURE
Descriptor:DER F 2
Authors:Ichikawa, S., Hatanaka, H., Yuuki, T., Iwamoto, N., Ogura, K., Okumura, Y., Inagaki, F.
Deposit date:1997-04-07
Release date:1998-04-08
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution structure of Der f 2, the major mite allergen for atopic diseases.
J.Biol.Chem., 273, 1998
1AHM
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DER F 2, THE MAJOR MITE ALLERGEN FROM DERMATOPHAGOIDES FARINAE, NMR, 10 STRUCTURES
Descriptor:DER F 2
Authors:Ichikawa, S., Hatanaka, H., Yuuki, T., Iwamoto, N., Ogura, K., Okumura, Y., Inagaki, F.
Deposit date:1997-04-07
Release date:1998-04-08
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution structure of Der f 2, the major mite allergen for atopic diseases.
J.Biol.Chem., 273, 1998
3SIC
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MOLECULAR RECOGNITION AT THE ACTIVE SITE OF SUBTILISIN BPN': CRYSTALLOGRAPHIC STUDIES USING GENETICALLY ENGINEERED PROTEINACEOUS INHIBITOR SSI (STREPTOMYCES SUBTILISIN INHIBITOR)
Descriptor:SUBTILISIN BPN', STREPTOMYCES SUBTILISIN INHIBITOR (SSI), CALCIUM ION
Authors:Mitsui, Y., Takeuchi, Y., Nakamura, K.T.
Deposit date:1991-08-30
Release date:1994-01-31
Last modified:2017-11-29
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Molecular recognition at the active site of subtilisin BPN': crystallographic studies using genetically engineered proteinaceous inhibitor SSI (Streptomyces subtilisin inhibitor).
Protein Eng., 4, 1991
5SIC
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MOLECULAR RECOGNITION AT THE ACTIVE SITE OF SUBTILISIN BPN': CRYSTALLOGRAPHIC STUDIES USING GENETICALLY ENGINEERED PROTEINACEOUS INHIBITOR SSI (STREPTOMYCES SUBTILISIN INHIBITOR)
Descriptor:SUBTILISIN BPN', SUBTILISIN INHIBITOR (SSI), CALCIUM ION
Authors:Mitsui, Y., Takeuchi, Y., Nakamura, K.T.
Deposit date:1991-11-18
Release date:1994-01-31
Last modified:2017-11-29
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Molecular recognition at the active site of subtilisin BPN': crystallographic studies using genetically engineered proteinaceous inhibitor SSI (Streptomyces subtilisin inhibitor).
Protein Eng., 4, 1991
2TLD
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CRYSTAL STRUCTURE OF AN ENGINEERED SUBTILISIN INHIBITOR COMPLEXED WITH BOVINE TRYPSIN
Descriptor:TRYPSIN, STREPTOMYCES SUBTILISIN INHIBITOR (SSI)
Authors:Mitsui, Y., Takeuchi, Y., Nonaka, T., Nakamura, K.T.
Deposit date:1991-09-16
Release date:1992-07-15
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Crystal structure of an engineered subtilisin inhibitor complexed with bovine trypsin.
Proc.Natl.Acad.Sci.USA, 89, 1992
3W1E
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STRUCTURE OF FLGT, A FLAGELLAR BASAL BODY COMPONENT PROTEIN
Descriptor:Flagella basal-body protein
Authors:Terashima, H., Sakuma, M., Homma, M., Imada, K.
Deposit date:2012-11-14
Release date:2013-04-03
Last modified:2013-08-14
Method:X-RAY DIFFRACTION (2 Å)
Cite:Insight into the assembly mechanism in the supramolecular rings of the sodium-driven Vibrio flagellar motor from the structure of FlgT
Proc.Natl.Acad.Sci.USA, 110, 2013
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