Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
1C4L
DownloadVisualize
BU of 1c4l by Molmil
SOLUTION STRUCTURE OF AN RNA DUPLEX INCLUDING A C-U BASE-PAIR
Descriptor: RNA (5'-R(*CP*CP*UP*GP*CP*GP*UP*CP*G)-3'), RNA (5'-R(*CP*GP*AP*CP*UP*CP*AP*GP*G)-3')
Authors:Tanaka, Y, Kojima, C, Yamazaki, T, Kodama, T.S, Yasuno, K, Miyashita, S, Ono, A.M, Ono, A.S, Kainosho, M, Kyogoku, Y.
Deposit date:1999-08-30
Release date:2000-08-09
Last modified:2023-12-27
Method:SOLUTION NMR
Cite:Solution structure of an RNA duplex including a C-U base pair.
Biochemistry, 39, 2000
4U5X
DownloadVisualize
BU of 4u5x by Molmil
Structure of plant small GTPase OsRac1 complexed with the non-hydrolyzable GTP analog GMPPNP
Descriptor: GLYCEROL, MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER, ...
Authors:Ohki, I, Kosami, K, Fujiwara, T, Nakagawa, A, Shimamoto, K, Kojima, C.
Deposit date:2014-07-25
Release date:2014-08-20
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:The Crystal Structure of the Plant Small GTPase OsRac1 Reveals Its Mode of Binding to NADPH Oxidase
J.Biol.Chem., 289, 2014
3AXY
DownloadVisualize
BU of 3axy by Molmil
Structure of Florigen Activation Complex Consisting of Rice Florigen Hd3a, 14-3-3 Protein GF14 and Rice FD Homolog OsFD1
Descriptor: 14-3-3-like protein GF14-C, Protein HEADING DATE 3A, Rice FD homolog OsFD1
Authors:Ohki, I, Furuita, K, Hayashi, K, Taoka, K, Tsuji, H, Nakagawa, A, Shimamoto, K, Kojima, C.
Deposit date:2011-04-19
Release date:2011-08-03
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:14-3-3 proteins act as intracellular receptors for rice Hd3a florigen
Nature, 476, 2011
1DHH
DownloadVisualize
BU of 1dhh by Molmil
NMR SOLUTION STRUCTURE OF THE DNA DUPLEX CONTAINING DNA/RNA HYBRID REGION, D(GG)R(AGAU)D(GAC)/D(GTCATCTCC)
Descriptor: DNA (5'-D(*GP*TP*CP*AP*TP*CP*TP*CP*C)-3'), DNA/RNA (5'-D(*GP*G)-R(P*AP*GP*AP*U)-D(P*GP*AP*C)-3')
Authors:Nishizaki, T, Iwai, S, Ohkubo, T, Kojima, C, Nakamura, H, Kyogoku, Y, Ohtsuka, E.
Deposit date:1995-10-18
Release date:1996-04-03
Last modified:2022-02-16
Method:SOLUTION NMR
Cite:Solution Strucutres of DNA duplexes containing a DNA x RNA hybrid region, d(GG)r(AGAU)d(GAC) x d(GTCATCTCC) and d(GGAGA)r(UGAC) x d(GTCATCTCC).
Biochemistry, 35, 1996
1DRN
DownloadVisualize
BU of 1drn by Molmil
NMR SOLUTION STRUCTURE OF THE DNA DUPLEX CONTAINING DNA/RNA HYBRID REGION, D(GGAGA)R(UGAC)/D(GTCATCTCC)
Descriptor: DNA (5'-D(*GP*TP*CP*AP*TP*CP*TP*CP*C)-3'), DNA/RNA (5'-D(*GP*GP*AP*GP*A)-R(P*UP*GP*AP*C)-3')
Authors:Nishizaki, T, Iwai, S, Ohkubo, T, Kojima, C, Nakamura, H, Kyogoku, Y, Ohtsuka, E.
Deposit date:1995-11-15
Release date:1996-04-03
Last modified:2022-02-16
Method:SOLUTION NMR
Cite:Solution Strucutres of DNA duplexes containing a DNA x RNA hybrid region, d(GG)r(AGAU)d(GAC) x d(GTCATCTCC) and d(GGAGA)r(UGAC) x d(GTCATCTCC).
Biochemistry, 35, 1996
2E30
DownloadVisualize
BU of 2e30 by Molmil
Solution structure of the cytoplasmic region of Na+/H+ exchanger 1 complexed with essential cofactor calcineurin B homologous protein 1
Descriptor: CALCIUM ION, Calcium-binding protein p22, Sodium/hydrogen exchanger 1
Authors:Mishima, M, Wakabayashi, S, Kojima, C.
Deposit date:2006-11-19
Release date:2006-12-19
Last modified:2022-03-09
Method:SOLUTION NMR
Cite:Solution structure of the cytoplasmic region of Na+/H+ exchanger 1 complexed with essential cofactor calcineurin B homologous protein 1
J.Biol.Chem., 282, 2007
3A8R
DownloadVisualize
BU of 3a8r by Molmil
The structure of the N-terminal regulatory domain of a plant NADPH oxidase
Descriptor: CALCIUM ION, Putative uncharacterized protein
Authors:Oda, T, Hashimoto, H, Kuwabara, N, Akashi, S, Hayashi, K, Kojima, C, Wong, H.L, Kawasaki, T, Shimamoto, K, Sato, M, Shimizu, T.
Deposit date:2009-10-07
Release date:2009-10-27
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:The structure of the N-terminal regulatory domain of a plant NADPH oxidase and its functional implications
J.Biol.Chem., 285, 2010
8HEW
DownloadVisualize
BU of 8hew by Molmil
Potato 14-3-3 St14f
Descriptor: 14-3-3 protein, StFDL1 peptide
Authors:Taoka, K, Kawahara, I, Shinya, S, Harada, K, Muranaka, T, Furuita, K, Nakagawa, A, Fujiwara, T, Tsuji, H, Kojima, C.
Deposit date:2022-11-08
Release date:2023-09-20
Method:X-RAY DIFFRACTION (2.59 Å)
Cite:Multifunctional chemical inhibitors of the florigen activation complex discovered by structure-based high-throughput screening.
Plant J., 112, 2022
5GIW
DownloadVisualize
BU of 5giw by Molmil
Solution NMR structure of Humanin containing a D-isomerized serine residue
Descriptor: Humanin
Authors:Furuita, K, Sugiki, T, Alsanousi, N, Fujiwara, T, Kojima, C.
Deposit date:2016-06-25
Release date:2016-07-20
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Solution NMR structure and inhibitory effect against amyloid-beta fibrillation of Humanin containing a d-isomerized serine residue
Biochem.Biophys.Res.Commun., 477, 2016
1UEL
DownloadVisualize
BU of 1uel by Molmil
Solution structure of ubiquitin-like domain of hHR23B complexed with ubiquitin-interacting motif of proteasome subunit S5a
Descriptor: 26S proteasome non-ATPase regulatory subunit 4, UV excision repair protein RAD23 homolog B
Authors:Fujiwara, K, Tenno, T, Jee, J.G, Sugasawa, K, Ohki, I, Kojima, C, Tochio, H, Hiroaki, H, Hanaoka, H, Shirakawa, M, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2003-05-19
Release date:2004-02-10
Last modified:2023-12-27
Method:SOLUTION NMR
Cite:Structure of the Ubiquitin-interacting Motif of S5a Bound to the Ubiquitin-like Domain of HR23B
J.Biol.Chem., 279, 2004
1UGL
DownloadVisualize
BU of 1ugl by Molmil
Solution structure of S8-SP11
Descriptor: S-locus pollen protein
Authors:Mishima, M, Takayama, S, Sasaki, K, Jee, J.G, Kojima, C, Isogai, A, Shirakawa, M, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2003-06-16
Release date:2003-09-30
Last modified:2023-12-27
Method:SOLUTION NMR
Cite:Structure of the Male Determinant Factor for Brassica Self-incompatibility
J.Biol.Chem., 278, 2003
1X60
DownloadVisualize
BU of 1x60 by Molmil
Solution structure of the peptidoglycan binding domain of B. subtilis cell wall lytic enzyme CwlC
Descriptor: Sporulation-specific N-acetylmuramoyl-L-alanine amidase
Authors:Mishima, M, Shida, T, Yabuki, K, Kato, K, Sekiguchi, J, Kojima, C.
Deposit date:2005-05-17
Release date:2005-08-09
Last modified:2022-03-02
Method:SOLUTION NMR
Cite:Solution Structure of the Peptidoglycan Binding Domain of Bacillus subtilis Cell Wall Lytic Enzyme CwlC: Characterization of the Sporulation-Related Repeats by NMR(,)
Biochemistry, 44, 2005
1X26
DownloadVisualize
BU of 1x26 by Molmil
Solution structure of the AA-mismatch DNA complexed with naphthyridine-azaquinolone
Descriptor: 5'-D(*CP*AP*TP*TP*CP*AP*GP*TP*TP*AP*G)-3', 5'-D(*CP*TP*AP*AP*CP*AP*GP*AP*AP*TP*G)-3', N~3~-{3-[(7-METHYL-1,8-NAPHTHYRIDIN-2-YL)AMINO]-3-OXOPROPYL}-N~1~-[(7-OXO-7,8-DIHYDRO-1,8-NAPHTHYRIDIN-2-YL)METHYL]-BET A-ALANINAMIDE
Authors:Nakatani, K, Hagihara, S, Goto, Y, Kobori, A, Hagihara, M, Hayashi, G, Kyo, M, Nomura, M, Mishima, M, Kojima, C.
Deposit date:2005-04-20
Release date:2006-04-04
Last modified:2022-03-02
Method:SOLUTION NMR
Cite:Small-molecule ligand induces nucleotide flipping in (CAG)n trinucleotide repeats
Nat.Chem.Biol., 1, 2005
7XBQ
DownloadVisualize
BU of 7xbq by Molmil
Crystal structure of potato 14-3-3 protein St14f
Descriptor: Putative 14-3-3 protein
Authors:Harada, K, Kojima, C, Yamashita, E, Nakagawa, A.
Deposit date:2022-03-21
Release date:2022-07-20
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.45 Å)
Cite:Crystal structure of potato 14-3-3 protein St14f revealed the importance of helix I in StFDL1 recognition.
Sci Rep, 12, 2022
7X8V
DownloadVisualize
BU of 7x8v by Molmil
Cooperative regulation of PBI1 and MAPKs controls WRKY45 transcription factor in rice immunity
Descriptor: Os01g0156300 protein
Authors:Ichimaru, K, Harada, K, Yamaguchi, K, Shigeta, S, Shimada, K, Ishikawa, K, Inoue, K, Nishio, Y, Yoshimura, S, Inoue, H, Yamashita, E, Fujiwara, T, Nakagawa, A, Kojima, C, Kawasaki, T.
Deposit date:2022-03-15
Release date:2022-04-06
Last modified:2022-06-01
Method:X-RAY DIFFRACTION (1.84 Å)
Cite:Cooperative regulation of PBI1 and MAPKs controls WRKY45 transcription factor in rice immunity.
Nat Commun, 13, 2022
7YVW
DownloadVisualize
BU of 7yvw by Molmil
NMR determination of the 2:1 binding motif structure involving cytosine flipping out for the recognition of the CGG/CGG triad DNA
Descriptor: 3-[3-[(7-methyl-1,8-naphthyridin-2-yl)carbamoyloxy]propylamino]propyl ~{N}-(7-methyl-1,8-naphthyridin-2-yl)carbamate, DNA (5'-D(*CP*AP*TP*TP*CP*GP*GP*TP*TP*AP*G)-3'), DNA (5'-D(*CP*TP*AP*AP*CP*GP*GP*AP*AP*TP*G)-3')
Authors:Furuita, K, Yamada, T, Sakurabayashi, S, Nomura, M, Kojima, C, Nakatani, K.
Deposit date:2022-08-19
Release date:2023-06-14
Method:SOLUTION NMR
Cite:NMR determination of the 2:1 binding complex of naphthyridine carbamate dimer (NCD) and CGG/CGG triad in double-stranded DNA.
Nucleic Acids Res., 50, 2022
2ND5
DownloadVisualize
BU of 2nd5 by Molmil
Lysine dimethylated FKBP12
Descriptor: Peptidyl-prolyl cis-trans isomerase FKBP1A
Authors:Hattori, Y, Sebera, J, Sychrovsky, V, Furuita, K, Sugiki, T, Ohki, I, Ikegami, T, Kobayashi, N, Tanaka, Y, Fujiwara, T, Kojima, C.
Deposit date:2016-05-05
Release date:2017-05-17
Method:SOLUTION NMR
Cite:NMR Observation of Protein Surface Salt Bridges at Neutral pH
To be Published
2RRR
DownloadVisualize
BU of 2rrr by Molmil
DNA oligomer containing ethylene cross-linked cyclic 2'-deoxyuridylate dimer
Descriptor: DNA (5'-D(*CP*CP*TP*TP*CP*AP*TP*TP*AP*CP*AP*TP*CP*C)-3'), DNA (5'-D(*GP*GP*AP*TP*GP*TP*AP*AP*TP*GP*AP*AP*GP*G)-3')
Authors:Furuita, K, Murata, S, Jee, J.G, Ichikawa, S, Matsuda, A, Kojima, C.
Deposit date:2011-03-24
Release date:2011-06-08
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Structural Feature of Bent DNA Recognized by HMGB1
J.Am.Chem.Soc., 133, 2011
2RUJ
DownloadVisualize
BU of 2ruj by Molmil
Solution structure of MTSL spin-labeled Schizosaccharomyces pombe Sin1 CRIM domain
Descriptor: Stress-activated map kinase-interacting protein 1
Authors:Furuita, K, Kataoka, S, Sugiki, T, Kobayashi, N, Ikegami, T, Shiozaki, K, Fujiwara, T, Kojima, C.
Deposit date:2014-07-24
Release date:2015-07-29
Method:SOLUTION NMR
Cite:Utilization of paramagnetic relaxation enhancements for high-resolution NMR structure determination of a soluble loop-rich protein with sparse NOE distance restraints
J.Biomol.Nmr, 61, 2015
2RR3
DownloadVisualize
BU of 2rr3 by Molmil
Solution structure of the complex between human VAP-A MSP domain and human OSBP FFAT motif
Descriptor: Oxysterol-binding protein 1, Vesicle-associated membrane protein-associated protein A
Authors:Furuita, K, Jee, J, Fukada, H, Mishima, M, Kojima, C.
Deposit date:2010-03-09
Release date:2010-03-23
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Electrostatic interaction between oxysterol-binding protein and VAMP-associated protein A revealed by NMR and mutagenesis studies
J.Biol.Chem., 285, 2010
2RRQ
DownloadVisualize
BU of 2rrq by Molmil
DNA oligomer containing propylene cross-linked cyclic 2'-deoxyuridylate dimer
Descriptor: DNA (5'-D(*CP*CP*TP*TP*CP*AP*(JDT)P*TP*AP*CP*AP*TP*CP*C)-3'), DNA (5'-D(*GP*GP*AP*TP*GP*TP*AP*AP*TP*GP*AP*AP*GP*G)-3')
Authors:Furuita, K, Murata, S, Jee, J.G, Ichikawa, S, Matsuda, A, Kojima, C.
Deposit date:2011-03-24
Release date:2011-06-08
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Structural Feature of Bent DNA Recognized by HMGB1
J.Am.Chem.Soc., 133, 2011
2RT8
DownloadVisualize
BU of 2rt8 by Molmil
Structure of metallo-dna in solution
Descriptor: DNA (5'-D(*CP*GP*CP*GP*TP*TP*GP*TP*CP*C)-3'), DNA (5'-D(*GP*GP*AP*CP*TP*TP*CP*GP*CP*G)-3'), MERCURY (II) ION
Authors:Yamaguchi, H, Sebera, J, Kondo, J, Oda, S, Komuro, T, Kawamura, T, Dairaku, T, Kondo, Y, Okamoto, I, Ono, A, Burda, J.V, Kojima, C, Sychrovsky, V, Tanaka, Y.
Deposit date:2013-06-18
Release date:2014-03-05
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:The structure of metallo-DNA with consecutive thymine-HgII-thymine base pairs explains positive entropy for the metallo base pair formation.
Nucleic Acids Res., 42, 2014
2RVK
DownloadVisualize
BU of 2rvk by Molmil
Refined solution structure of Schizosaccharomyces pombe Sin1 CRIM domain
Descriptor: Stress-activated map kinase-interacting protein 1
Authors:Furuita, K, Kataoka, S, Shiozaki, K, Kojima, C.
Deposit date:2015-12-10
Release date:2017-01-25
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Substrate specificity of TOR complex 2 is determined by a ubiquitin-fold domain of the Sin1 subunit.
Elife, 6, 2017
2RM8
DownloadVisualize
BU of 2rm8 by Molmil
The solution structure of phototactic transducer protein HtrII linker region from Natronomonas pharaonis
Descriptor: Sensory rhodopsin II transducer
Authors:Hayashi, K, Sudo, Y, Jee, J, Mishima, M, Hara, H, Kamo, N, Kojima, C.
Deposit date:2007-10-15
Release date:2007-12-04
Last modified:2022-03-16
Method:SOLUTION NMR
Cite:Structural Analysis of the Phototactic Transducer Protein HtrII Linker Region from Natronomonas pharaonis
Biochemistry, 46, 2007
2RVP
DownloadVisualize
BU of 2rvp by Molmil
Solution structure of DNA Containing Metallo-Base-Pair
Descriptor: DNA (5'-D(*TP*AP*AP*TP*AP*TP*AP*CP*TP*TP*AP*AP*TP*TP*A)-3'), DNA (5'-D(*TP*AP*AP*TP*TP*AP*AP*CP*TP*AP*TP*AP*TP*TP*A)-3'), SILVER ION
Authors:Dairaku, T, Furuita, K, Sato, H, Sebera, J, Nakashima, K, Kondo, J, Yamanaka, D, Kondo, Y, Okamoto, I, Ono, A, Sychrovsky, V, Kojima, C, Tanaka, Y.
Deposit date:2016-03-22
Release date:2016-08-31
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Structure Determination of an Ag(I) -Mediated Cytosine-Cytosine Base Pair within DNA Duplex in Solution with (1) H/(15) N/(109) Ag NMR Spectroscopy.
Chemistry, 22, 2016

 

12>

217705

PDB entries from 2024-03-27

PDB statisticsPDBj update infoContact PDBjnumon