Author results

1C4L
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SOLUTION STRUCTURE OF AN RNA DUPLEX INCLUDING A C-U BASE-PAIR
Descriptor:RNA (5'-R(*CP*GP*AP*CP*UP*CP*AP*GP*G)-3'), RNA (5'-R(*CP*CP*UP*GP*CP*GP*UP*CP*G)-3')
Authors:Tanaka, Y., Kojima, C., Yamazaki, T., Kodama, T.S., Yasuno, K., Miyashita, S., Ono, A.M., Ono, A.S., Kainosho, M., Kyogoku, Y.
Deposit date:1999-08-30
Release date:2000-08-09
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution structure of an RNA duplex including a C-U base pair.
Biochemistry, 39, 2000
3AXY
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STRUCTURE OF FLORIGEN ACTIVATION COMPLEX CONSISTING OF RICE FLORIGEN HD3A, 14-3-3 PROTEIN GF14 AND RICE FD HOMOLOG OSFD1
Descriptor:Protein HEADING DATE 3A, 14-3-3-like protein GF14-C, Rice FD homolog OsFD1
Authors:Ohki, I., Furuita, K., Hayashi, K., Taoka, K., Tsuji, H., Nakagawa, A., Shimamoto, K., Kojima, C.
Deposit date:2011-04-19
Release date:2011-08-03
Last modified:2011-10-12
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:14-3-3 proteins act as intracellular receptors for rice Hd3a florigen
Nature, 476, 2011
1DHH
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NMR SOLUTION STRUCTURE OF THE DNA DUPLEX CONTAINING DNA/RNA HYBRID REGION, D(GG)R(AGAU)D(GAC)/D(GTCATCTCC)
Descriptor:DNA/RNA (5'-D(*GP*G)-R(P*AP*GP*AP*U)-D(P*GP*AP*C)-3'), DNA (5'-D(*GP*TP*CP*AP*TP*CP*TP*CP*C)-3')
Authors:Nishizaki, T., Iwai, S., Ohkubo, T., Kojima, C., Nakamura, H., Kyogoku, Y., Ohtsuka, E.
Deposit date:1995-10-18
Release date:1996-04-03
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution Strucutres of DNA duplexes containing a DNA x RNA hybrid region, d(GG)r(AGAU)d(GAC) x d(GTCATCTCC) and d(GGAGA)r(UGAC) x d(GTCATCTCC).
Biochemistry, 35, 1996
1DRN
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NMR SOLUTION STRUCTURE OF THE DNA DUPLEX CONTAINING DNA/RNA HYBRID REGION, D(GGAGA)R(UGAC)/D(GTCATCTCC)
Descriptor:DNA/RNA (5'-D(*GP*GP*AP*GP*A)-R(P*UP*GP*AP*C)-3'), DNA (5'-D(*GP*TP*CP*AP*TP*CP*TP*CP*C)-3')
Authors:Nishizaki, T., Iwai, S., Ohkubo, T., Kojima, C., Nakamura, H., Kyogoku, Y., Ohtsuka, E.
Deposit date:1995-11-15
Release date:1996-04-03
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution Strucutres of DNA duplexes containing a DNA x RNA hybrid region, d(GG)r(AGAU)d(GAC) x d(GTCATCTCC) and d(GGAGA)r(UGAC) x d(GTCATCTCC).
Biochemistry, 35, 1996
1UEL
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SOLUTION STRUCTURE OF UBIQUITIN-LIKE DOMAIN OF HHR23B COMPLEXED WITH UBIQUITIN-INTERACTING MOTIF OF PROTEASOME SUBUNIT S5A
Descriptor:UV excision repair protein RAD23 homolog B, 26S proteasome non-ATPase regulatory subunit 4
Authors:Fujiwara, K., Tenno, T., Jee, J.G., Sugasawa, K., Ohki, I., Kojima, C., Tochio, H., Hiroaki, H., Hanaoka, H., Shirakawa, M., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2003-05-19
Release date:2004-02-10
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Structure of the Ubiquitin-interacting Motif of S5a Bound to the Ubiquitin-like Domain of HR23B
J.Biol.Chem., 279, 2004
1UGL
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SOLUTION STRUCTURE OF S8-SP11
Descriptor:S-locus pollen protein
Authors:Mishima, M., Takayama, S., Sasaki, K., Jee, J.G., Kojima, C., Isogai, A., Shirakawa, M., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2003-06-16
Release date:2003-09-30
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Structure of the Male Determinant Factor for Brassica Self-incompatibility
J.Biol.Chem., 278, 2003
1X26
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SOLUTION STRUCTURE OF THE AA-MISMATCH DNA COMPLEXED WITH NAPHTHYRIDINE-AZAQUINOLONE
Descriptor:5'-D(*CP*TP*AP*AP*CP*AP*GP*AP*AP*TP*G)-3', 5'-D(*CP*AP*TP*TP*CP*AP*GP*TP*TP*AP*G)-3', N~3~-{3-[(7-METHYL-1,8-NAPHTHYRIDIN-2-YL)AMINO]-3-OXOPROPYL}-N~1~-[(7-OXO-7,8-DIHYDRO-1,8-NAPHTHYRIDIN-2-YL)METHYL]-BETA-ALANINAMIDE
Authors:Nakatani, K., Hagihara, S., Goto, Y., Kobori, A., Hagihara, M., Hayashi, G., Kyo, M., Nomura, M., Mishima, M., Kojima, C.
Deposit date:2005-04-20
Release date:2006-04-04
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Small-molecule ligand induces nucleotide flipping in (CAG)n trinucleotide repeats
Nat.Chem.Biol., 1, 2005
1X60
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SOLUTION STRUCTURE OF THE PEPTIDOGLYCAN BINDING DOMAIN OF B. SUBTILIS CELL WALL LYTIC ENZYME CWLC
Descriptor:Sporulation-specific N-acetylmuramoyl-L-alanine amidase
Authors:Mishima, M., Shida, T., Yabuki, K., Kato, K., Sekiguchi, J., Kojima, C.
Deposit date:2005-05-17
Release date:2005-08-09
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution Structure of the Peptidoglycan Binding Domain of Bacillus subtilis Cell Wall Lytic Enzyme CwlC: Characterization of the Sporulation-Related Repeats by NMR(,)
Biochemistry, 44, 2005
2E30
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SOLUTION STRUCTURE OF THE CYTOPLASMIC REGION OF NA+/H+ EXCHANGER 1 COMPLEXED WITH ESSENTIAL COFACTOR CALCINEURIN B HOMOLOGOUS PROTEIN 1
Descriptor:Calcium-binding protein p22, Sodium/hydrogen exchanger 1, CALCIUM ION
Authors:Mishima, M., Wakabayashi, S., Kojima, C.
Deposit date:2006-11-19
Release date:2006-12-19
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution structure of the cytoplasmic region of Na+/H+ exchanger 1 complexed with essential cofactor calcineurin B homologous protein 1
J.Biol.Chem., 282, 2007
2ND5
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LYSINE DIMETHYLATED FKBP12
Descriptor:Peptidyl-prolyl cis-trans isomerase FKBP1A
Authors:Hattori, Y., Sebera, J., Sychrovsky, V., Furuita, K., Sugiki, T., Ohki, I., Ikegami, T., Kobayashi, N., Tanaka, Y., Fujiwara, T., Kojima, C.
Deposit date:2016-05-05
Release date:2017-05-17
Method:SOLUTION NMR
Cite:NMR Observation of Protein Surface Salt Bridges at Neutral pH
To be Published
2RM8
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THE SOLUTION STRUCTURE OF PHOTOTACTIC TRANSDUCER PROTEIN HTRII LINKER REGION FROM NATRONOMONAS PHARAONIS
Descriptor:Sensory rhodopsin II transducer
Authors:Hayashi, K., Sudo, Y., Jee, J., Mishima, M., Hara, H., Kamo, N., Kojima, C.
Deposit date:2007-10-15
Release date:2007-12-04
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Structural Analysis of the Phototactic Transducer Protein HtrII Linker Region from Natronomonas pharaonis
Biochemistry, 46, 2007
2RR3
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SOLUTION STRUCTURE OF THE COMPLEX BETWEEN HUMAN VAP-A MSP DOMAIN AND HUMAN OSBP FFAT MOTIF
Descriptor:Vesicle-associated membrane protein-associated protein A, Oxysterol-binding protein 1
Authors:Furuita, K., Jee, J., Fukada, H., Mishima, M., Kojima, C.
Deposit date:2010-03-09
Release date:2010-03-23
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Electrostatic interaction between oxysterol-binding protein and VAMP-associated protein A revealed by NMR and mutagenesis studies
J.Biol.Chem., 285, 2010
2RRQ
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DNA OLIGOMER CONTAINING PROPYLENE CROSS-LINKED CYCLIC 2'-DEOXYURIDYLATE DIMER
Descriptor:DNA (5'-D(*CP*CP*TP*TP*CP*AP*(JDT)P*TP*AP*CP*AP*TP*CP*C)-3'), DNA (5'-D(*GP*GP*AP*TP*GP*TP*AP*AP*TP*GP*AP*AP*GP*G)-3')
Authors:Furuita, K., Murata, S., Jee, J.G., Ichikawa, S., Matsuda, A., Kojima, C.
Deposit date:2011-03-24
Release date:2011-06-08
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Structural Feature of Bent DNA Recognized by HMGB1
J.Am.Chem.Soc., 133, 2011
2RRR
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DNA OLIGOMER CONTAINING ETHYLENE CROSS-LINKED CYCLIC 2'-DEOXYURIDYLATE DIMER
Descriptor:DNA (5'-D(*CP*CP*TP*TP*CP*AP*TP*TP*AP*CP*AP*TP*CP*C)-3'), DNA (5'-D(*GP*GP*AP*TP*GP*TP*AP*AP*TP*GP*AP*AP*GP*G)-3')
Authors:Furuita, K., Murata, S., Jee, J.G., Ichikawa, S., Matsuda, A., Kojima, C.
Deposit date:2011-03-24
Release date:2011-06-08
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Structural Feature of Bent DNA Recognized by HMGB1
J.Am.Chem.Soc., 133, 2011
2RT8
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STRUCTURE OF METALLO-DNA IN SOLUTION
Descriptor:DNA (5'-D(*CP*GP*CP*GP*TP*TP*GP*TP*CP*C)-3'), DNA (5'-D(*GP*GP*AP*CP*TP*TP*CP*GP*CP*G)-3'), MERCURY (II) ION
Authors:Yamaguchi, H., Sebera, J., Kondo, J., Oda, S., Komuro, T., Kawamura, T., Dairaku, T., Kondo, Y., Okamoto, I., Ono, A., Burda, J.V., Kojima, C., Sychrovsky, V., Tanaka, Y.
Deposit date:2013-06-18
Release date:2014-03-05
Method:SOLUTION NMR
Cite:The structure of metallo-DNA with consecutive thymine-HgII-thymine base pairs explains positive entropy for the metallo base pair formation.
Nucleic Acids Res., 2013
2RUJ
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SOLUTION STRUCTURE OF MTSL SPIN-LABELED SCHIZOSACCHAROMYCES POMBE SIN1 CRIM DOMAIN
Descriptor:Stress-activated map kinase-interacting protein 1
Authors:Furuita, K., Kataoka, S., Sugiki, T., Kobayashi, N., Ikegami, T., Shiozaki, K., Fujiwara, T., Kojima, C.
Deposit date:2014-07-24
Release date:2015-07-29
Method:SOLUTION NMR
Cite:Utilization of paramagnetic relaxation enhancements for high-resolution NMR structure determination of a soluble loop-rich protein with sparse NOE distance restraints
J.Biomol.Nmr, 61, 2015
2RVK
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REFINED SOLUTION STRUCTURE OF SCHIZOSACCHAROMYCES POMBE SIN1 CRIM DOMAIN
Descriptor:Stress-activated map kinase-interacting protein 1
Authors:Furuita, K., Kataoka, S., Shiozaki, K., Kojima, C.
Deposit date:2015-12-10
Release date:2017-01-25
Last modified:2017-11-15
Method:SOLUTION NMR
Cite:Substrate specificity of TOR complex 2 is determined by a ubiquitin-fold domain of the Sin1 subunit.
Elife, 6, 2017
2RVP
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SOLUTION STRUCTURE OF DNA CONTAINING METALLO-BASE-PAIR
Descriptor:DNA (5'-D(*TP*AP*AP*TP*AP*TP*AP*CP*TP*TP*AP*AP*TP*TP*A)-3'), DNA (5'-D(*TP*AP*AP*TP*TP*AP*AP*CP*TP*AP*TP*AP*TP*TP*A)-3'), SILVER ION
Authors:Dairaku, T., Furuita, K., Sato, H., Sebera, J., Nakashima, K., Kondo, J., Yamanaka, D., Kondo, Y., Okamoto, I., Ono, A., Sychrovsky, V., Kojima, C., Tanaka, Y.
Deposit date:2016-03-22
Release date:2016-08-31
Last modified:2017-06-07
Method:SOLUTION NMR
Cite:Structure Determination of an Ag(I) -Mediated Cytosine-Cytosine Base Pair within DNA Duplex in Solution with (1) H/(15) N/(109) Ag NMR Spectroscopy.
Chemistry, 22, 2016
3A8R
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THE STRUCTURE OF THE N-TERMINAL REGULATORY DOMAIN OF A PLANT NADPH OXIDASE
Descriptor:Putative uncharacterized protein, CALCIUM ION
Authors:Oda, T., Hashimoto, H., Kuwabara, N., Akashi, S., Hayashi, K., Kojima, C., Wong, H.L., Kawasaki, T., Shimamoto, K., Sato, M., Shimizu, T.
Deposit date:2009-10-07
Release date:2009-10-27
Last modified:2014-12-17
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:The structure of the N-terminal regulatory domain of a plant NADPH oxidase and its functional implications
J.Biol.Chem., 285, 2010
4U5X
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STRUCTURE OF PLANT SMALL GTPASE OSRAC1 COMPLEXED WITH THE NON-HYDROLYZABLE GTP ANALOG GMPPNP
Descriptor:Rac-like GTP-binding protein 1, PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER, MAGNESIUM ION, ...
Authors:Ohki, I., Kosami, K., Fujiwara, T., Nakagawa, A., Shimamoto, K., Kojima, C.
Deposit date:2014-07-25
Release date:2014-08-20
Last modified:2014-10-22
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:The Crystal Structure of the Plant Small GTPase OsRac1 Reveals Its Mode of Binding to NADPH Oxidase
J.Biol.Chem., 289, 2014
5GIW
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SOLUTION NMR STRUCTURE OF HUMANIN CONTAINING A D-ISOMERIZED SERINE RESIDUE
Descriptor:Humanin
Authors:Furuita, K., Sugiki, T., Alsanousi, N., Fujiwara, T., Kojima, C.
Deposit date:2016-06-25
Release date:2016-07-20
Last modified:2016-08-10
Method:SOLUTION NMR
Cite:Solution NMR structure and inhibitory effect against amyloid-beta fibrillation of Humanin containing a d-isomerized serine residue
Biochem.Biophys.Res.Commun., 477, 2016
2ZOV
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STRUCTURE OF THE PERIPLASMIC DOMAIN OF MOTB FROM SALMONELLA (CRYSTAL FORM I)
Descriptor:Chemotaxis protein motB
Authors:Imada, K., Kojima, S., Namba, K., Homma, M.
Deposit date:2008-06-09
Release date:2009-06-09
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Stator assembly and activation mechanism of the flagellar motor by the periplasmic region of MotB
Mol.Microbiol., 73, 2009
2ZVY
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STRUCTURE OF THE PERIPLASMIC DOMAIN OF MOTB FROM SALMONELLA (CRYSTAL FORM II)
Descriptor:Chemotaxis protein motB
Authors:Kojima, S., Homma, M., Namba, K., Imada, K.
Deposit date:2008-11-26
Release date:2009-09-01
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Stator assembly and activation mechanism of the flagellar motor by the periplasmic region of MotB
Mol.Microbiol., 73, 2009
2ZVZ
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STRUCTURE OF THE PERIPLASMIC DOMAIN OF MOTB FROM SALMONELLA (CRYSTAL FORM III)
Descriptor:Chemotaxis protein motB
Authors:Imada, K., Kojima, S., Namba, K., Homma, S.
Deposit date:2008-11-26
Release date:2009-09-01
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Stator assembly and activation mechanism of the flagellar motor by the periplasmic region of MotB
Mol.Microbiol., 73, 2009
5Y3Z
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STRUCTURE OF THE PERIPLASMIC DOMAIN OF THE MOTB L119P MUTANT FROM SALMONELLA (CRYSTAL FORM 1)
Descriptor:Motility protein B, ARGININE, IMIDAZOLE, ...
Authors:Takao, M., Kojima, S., Sakuma, M., Homma, M., Imada, K.
Deposit date:2017-07-31
Release date:2018-04-11
Last modified:2018-04-18
Method:X-RAY DIFFRACTION (2 Å)
Cite:The Helix Rearrangement in the Periplasmic Domain of the Flagellar Stator B Subunit Activates Peptidoglycan Binding and Ion Influx.
Structure, 26, 2018
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