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7MDZ
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BU of 7mdz by Molmil
80S rabbit ribosome stalled with benzamide-CHX
Descriptor: 18S rRNA, 28S rRNA, 40S ribosomal protein S21, ...
Authors:Koga, Y, Hoang, E.M, Park, Y, Keszei, A.F.A, Murray, J, Shao, S, Liau, B.B.
Deposit date:2021-04-06
Release date:2021-09-01
Last modified:2021-09-15
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Discovery of C13-Aminobenzoyl Cycloheximide Derivatives that Potently Inhibit Translation Elongation.
J.Am.Chem.Soc., 143, 2021
2ZF5
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BU of 2zf5 by Molmil
Crystal Structure of highly thermostable glycerol kinase from a hyperthermophilic archaeon
Descriptor: Glycerol kinase
Authors:Koga, Y, Katsumi, R, You, D.-J, Matsumura, H, Takano, K, Kanaya, S.
Deposit date:2007-12-20
Release date:2008-05-06
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Crystal structure of highly thermostable glycerol kinase from a hyperthermophilic archaeon in a dimeric form
Febs J., 275, 2008
6K79
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BU of 6k79 by Molmil
Glycerol kinase form Thermococcus kodakarensis, complex structure with substrate.
Descriptor: GLYCEROL, Glycerol kinase, TRIETHYLENE GLYCOL
Authors:Koga, Y, Angkawidjaja, C, Matsumura, H, Hokao, R.
Deposit date:2019-06-06
Release date:2020-06-10
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (2.19 Å)
Cite:Structural analysis of hexameric structure of glycerol kinase from Thermococcus kodakaraeinsis KOD1
To Be Published
6K78
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BU of 6k78 by Molmil
Glycerol kinase form Thermococcus kodakarensis, complex structure with substrate.
Descriptor: GLYCEROL, Glycerol kinase, TRIETHYLENE GLYCOL
Authors:Koga, Y, Angkawidjaja, C, Matsumura, H, Hokao, R.
Deposit date:2019-06-06
Release date:2020-06-10
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (2.301 Å)
Cite:Structural analysis of hexameric structure of glycerol kinase from Thermococcus kodakaraeinsis KOD1
To Be Published
6K76
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BU of 6k76 by Molmil
Glycerol kinase form Thermococcus kodakarensis, complex structure with substrate.
Descriptor: Glycerol kinase, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
Authors:Koga, Y, Angkawidjaja, C, Matsumura, H, Hokao, R.
Deposit date:2019-06-06
Release date:2020-06-10
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (3.05 Å)
Cite:Structural analysis of hexameric structure of glycerol kinase from Thermococcus kodakaraeinsis KOD1
To Be Published
4E19
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BU of 4e19 by Molmil
Crystal structure of RNase H1 from halophilic archaeon Halobacterium salinarum NRC-1
Descriptor: MANGANESE (II) ION, ribonuclease H1
Authors:You, D.J, Angkawidjaja, C, Koga, Y, Kanaya, S.
Deposit date:2012-03-06
Release date:2013-03-06
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.41 Å)
Cite:Crystal structure of RNase H1 from halophilic archaeon Halobacterium salinarum NRC-1
To be Published
4OEC
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BU of 4oec by Molmil
Crystal structure of glycerophosphodiester phosphodiesterase from Thermococcus kodakarensis KOD1
Descriptor: Glycerophosphoryl diester phosphodiesterase, MAGNESIUM ION
Authors:Atsuta, Y, You, D.J, Takano, K, Koga, Y, Kanaya, S.
Deposit date:2014-01-13
Release date:2015-01-14
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal structure of glycerophosphodiester phosphodiesterase from Thermococcus kodakarensis KOD1
To be Published
4JP8
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BU of 4jp8 by Molmil
Crystal structure of Pro-F17H/S324A
Descriptor: CALCIUM ION, Tk-subtilisin
Authors:Yuzaki, K, You, D.J, Uehara, R, Koga, Y, Kanaya, S.
Deposit date:2013-03-19
Release date:2014-01-29
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.21 Å)
Cite:Increase in activation rate of Pro-Tk-subtilisin by a single nonpolar-to-polar amino acid substitution at the hydrophobic core of the propeptide domain
Protein Sci., 22, 2013
4NYN
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BU of 4nyn by Molmil
Crystal structure of RNase H1 from halophilic archaeon Halobacterium salinarum NRC-1
Descriptor: MANGANESE (II) ION, Ribonuclease HI
Authors:You, D.J, Angkawidjaja, C, Koga, Y, Kanaya, S.
Deposit date:2013-12-11
Release date:2014-02-12
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.41 Å)
Cite:Crystal structure of RNase H1 from halophilic archaeon Halobacterium salinarum NRC-1
To be Published
4EB0
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BU of 4eb0 by Molmil
Crystal structure of Leaf-branch compost bacterial cutinase homolog
Descriptor: LCC, THIOCYANATE ION
Authors:Sulaiman, S, You, D.J, Eiko, K, Koga, Y, Kanaya, S.
Deposit date:2012-03-23
Release date:2013-03-27
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Crystal structure of Leaf-branch compost bacterial cutinase homolog
To be Published
4IBN
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BU of 4ibn by Molmil
Crystal structure of LC9-RNase H1, a type 1 RNase H with the type 2 active-site motif
Descriptor: Ribonuclease H
Authors:Nguyen, T.-N, You, D.-J, Kanaya, E, Koga, Y, Kanaya, S.
Deposit date:2012-12-09
Release date:2013-03-20
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.62 Å)
Cite:Crystal structure of metagenome-derived LC9-RNase H1 with atypical DEDN active site motif
Febs Lett., 587, 2013
2DFH
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BU of 2dfh by Molmil
Crystal structure of Tk-RNase HII(1-212)-C
Descriptor: Ribonuclease HII
Authors:Katagiri, Y, Takano, K, Chon, H, Matsumura, H, Koga, Y, Kanaya, S.
Deposit date:2006-03-01
Release date:2007-03-06
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.27 Å)
Cite:Conformational contagion in a protein: Structural properties of a chameleon sequence
Proteins, 68, 2007
2DF5
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BU of 2df5 by Molmil
Crystal Structure of Pf-PCP(1-204)-C
Descriptor: Pyrrolidone-carboxylate peptidase
Authors:Katagiri, Y, Takano, K, Chon, H, Matsumura, H, Koga, Y, Kanaya, S.
Deposit date:2006-02-24
Release date:2007-03-06
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Conformational contagion in a protein: structural properties of a chameleon sequence
Proteins, 68, 2007
2DFI
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BU of 2dfi by Molmil
Crystal structure of Pf-MAP(1-292)-C
Descriptor: COBALT (II) ION, Methionine aminopeptidase
Authors:Katagiri, Y, Takano, K, Chon, H, Matsumura, H, Koga, Y, Kanaya, S.
Deposit date:2006-03-01
Release date:2007-03-06
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Conformational contagion in a protein: Structural properties of a chameleon sequence
Proteins, 68, 2007
2DFE
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BU of 2dfe by Molmil
Crystal structure of Tk-RNase HII(1-200)-C
Descriptor: Ribonuclease HII
Authors:Katagiri, Y, Takano, K, Chon, H, Matsumura, H, Koga, Y, Kanaya, S.
Deposit date:2006-03-01
Release date:2007-03-06
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Conformational contagion in a protein: Structural properties of a chameleon sequence
Proteins, 68, 2007
2DFF
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BU of 2dff by Molmil
Crystal structure of Tk-RNase HII(1-204)-C
Descriptor: Ribonuclease HII
Authors:Katagiri, Y, Takano, K, Chon, H, Matsumura, H, Koga, Y, Kanaya, S.
Deposit date:2006-03-01
Release date:2007-03-06
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Conformational contagion in a protein: Structural properties of a chameleon sequence
Proteins, 68, 2007
2E4L
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BU of 2e4l by Molmil
Thermodynamic and Structural Analysis of Thermolabile RNase HI from Shewanella oneidensis MR-1
Descriptor: Ribonuclease HI
Authors:Tadokoro, T, You, D.J, Chon, H, Matsumura, H, Koga, Y, Takano, K, Kanaya, S.
Deposit date:2006-12-13
Release date:2007-05-01
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural, thermodynamic, and mutational analyses of a psychrotrophic RNase HI.
Biochemistry, 46, 2007
2ZWO
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BU of 2zwo by Molmil
Crystal structure of Ca2 site mutant of Pro-S324A
Descriptor: CALCIUM ION, Tk-subtilisin
Authors:Takeuchi, Y, Tanaka, S, Matsumura, H, Koga, Y, Takano, K, Kanaya, S.
Deposit date:2008-12-17
Release date:2009-06-23
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.07 Å)
Cite:Requirement of a unique Ca(2+)-binding loop for folding of Tk-subtilisin from a hyperthermophilic archaeon.
Biochemistry, 48, 2009
2ZWP
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BU of 2zwp by Molmil
Crystal structure of Ca3 site mutant of Pro-S324A
Descriptor: CALCIUM ION, Tk-subtilisin
Authors:Takeuchi, Y, Tanaka, S, Matsumura, H, Koga, Y, Takano, K, Kanaya, S.
Deposit date:2008-12-17
Release date:2009-06-23
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Requirement of a unique Ca(2+)-binding loop for folding of Tk-subtilisin from a hyperthermophilic archaeon.
Biochemistry, 48, 2009
1X1P
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BU of 1x1p by Molmil
Crystal structure of Tk-RNase HII(1-197)-A(28-42)
Descriptor: Ribonuclease HII
Authors:Takano, K, Endo, S, Mukaiyama, A, Chon, H, Matsumura, H, Koga, Y, Kanaya, S.
Deposit date:2005-04-11
Release date:2006-01-17
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Structure of amyloid beta fragments in aqueous environments
Febs J., 273, 2006
1X0M
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BU of 1x0m by Molmil
a Human Kynurenine Aminotransferase II Homologue from Pyrococcus horikoshii OT3
Descriptor: Aminotransferase II Homologue
Authors:Chon, H, Matsumura, H, Koga, Y, Takano, K, Kanaya, S.
Deposit date:2005-03-24
Release date:2005-04-12
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal structure of a human kynurenine aminotransferase II homologue from Pyrococcus horikoshii OT3 at 2.20 A resolution
Proteins, 61, 2005
3VHQ
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BU of 3vhq by Molmil
Crystal structure of the Ca6 site mutant of Pro-SA-subtilisin
Descriptor: CALCIUM ION, Tk-subtilisin
Authors:Uehara, R, Takeuchi, Y, Tanaka, S, Matsumura, H, Koga, Y, Takano, K, Kanaya, S.
Deposit date:2011-09-01
Release date:2012-07-11
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Requirement of Ca(2+) Ions for the Hyperthermostability of Tk-Subtilisin from Thermococcus kodakarensis
Biochemistry, 51, 2012
3VV2
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BU of 3vv2 by Molmil
Crystal structure of complex form between S324A-subtilisin and mutant Tkpro
Descriptor: CALCIUM ION, CHLORIDE ION, PROPEPTIDE from Tk-subtilisin, ...
Authors:Uehara, R, Ueda, Y, You, D.J, Takano, K, Koga, Y, Kanaya, S.
Deposit date:2012-07-12
Release date:2013-03-06
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.83 Å)
Cite:Accelerated maturation of Tk-subtilisin by a Leu Pro mutation at the C-terminus of the propeptide, which reduces the binding of the propeptide to Tk-subtilisin
Febs J., 280, 2013
2D0C
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BU of 2d0c by Molmil
Crystal structure of Bst-RNase HIII in complex with Mn2+
Descriptor: MANGANESE (II) ION, ribonuclease HIII
Authors:Chon, H, Matsumura, H, Koga, Y, Takano, K, Kanaya, S.
Deposit date:2005-07-31
Release date:2006-07-18
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Crystal structure and structure-based mutational analyses of RNase HIII from Bacillus stearothermophilus: a new type 2 RNase H with TBP-like substrate-binding domain at the N terminus
J.Mol.Biol., 356, 2006
2D0B
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BU of 2d0b by Molmil
Crystal structure of Bst-RNase HIII in complex with Mg2+
Descriptor: MAGNESIUM ION, ribonuclease HIII
Authors:Chon, H, Matsumura, H, Koga, Y, Takano, K, Kanaya, S.
Deposit date:2005-07-31
Release date:2006-07-18
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal structure and structure-based mutational analyses of RNase HIII from Bacillus stearothermophilus: a new type 2 RNase H with TBP-like substrate-binding domain at the N terminus
J.Mol.Biol., 356, 2006

 

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