Author results

1BQT
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THREE-DIMENSIONAL STRUCTURE OF HUMAN INSULIN-LIKE GROWTH FACTOR-I (IGF-I) DETERMINED BY 1H-NMR AND DISTANCE GEOMETRY, 6 STRUCTURES
Descriptor:INSULIN-LIKE GROWTH FACTOR-I
Authors:Sato, A., Nishimura, S., Ohkubo, T., Kyogoku, Y., Koyama, S., Kobayashi, M., Yasuda, T., Kobayashi, Y.
Deposit date:1998-08-18
Release date:1999-05-18
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Three-dimensional structure of human insulin-like growth factor-I (IGF-I) determined by 1H-NMR and distance geometry.
Int.J.Pept.Protein Res., 41, 1993
1AYG
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SOLUTION STRUCTURE OF CYTOCHROME C-552, NMR, 20 STRUCTURES
Descriptor:CYTOCHROME C-552, HEME C
Authors:Hasegawa, J., Yoshida, T., Yamazaki, T., Sambongi, Y., Yu, Y., Igarashi, Y., Kodama, T., Yamazaki, K., Hakusui, H., Kyogoku, Y., Kobayashi, Y.
Deposit date:1997-11-04
Release date:1998-11-25
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution structure of thermostable cytochrome c-552 from Hydrogenobacter thermophilus determined by 1H-NMR spectroscopy.
Biochemistry, 37, 1998
1DVV
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SOLUTION STRUCTURE OF THE QUINTUPLE MUTANT OF CYTOCHROME C-551 FROM PSEUDOMONAS AERUGINOSA
Descriptor:CYTOCHROME C551, PROTOPORPHYRIN IX CONTAINING FE
Authors:Hasegawa, J., Uchiyama, S., Tanimoto, Y., Mizutani, M., Kobayashi, Y., Sambongi, Y., Igarashi, Y.
Deposit date:2000-01-22
Release date:2000-11-29
Last modified:2018-03-14
Method:SOLUTION NMR
Cite:Selected mutations in a mesophilic cytochrome c confer the stability of a thermophilic counterpart.
J.Biol.Chem., 275, 2000
1O5P
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SOLUTION STRUCTURE OF HOLO-NEOCARZINOSTATIN
Descriptor:Neocarzinostatin, NEOCARZINOSTATIN-CHROMOPHORE
Authors:Takashima, H., Ishino, T., Yoshida, T., Hasuda, K., Ohkubo, T., Kobayashi, Y.
Deposit date:2003-10-04
Release date:2003-10-14
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution NMR Structure Investigation for Releasing Mechanism of Neocarzinostatin Chromophore from the Holoprotein
J.Biol.Chem., 280, 2005
3B2C
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CRYSTAL STRUCTURE OF THE COLLAGEN TRIPLE HELIX MODEL [{PRO-HYP(R)-GLY}4-{HYP(S)-PRO-GLY}2-{PRO-HYP(R)-GLY}4]3
Descriptor:Collagen-like peptide
Authors:Motooka, D., Kawahara, K., Nakamura, S., Doi, M., Nishi, Y., Nishiuchi, Y., Nakazawa, T., Yoshida, T., Ohkubo, T., Kobayashi, Y., Kang, Y.K., Uchiyama, S.
Deposit date:2011-07-26
Release date:2012-04-04
Method:X-RAY DIFFRACTION (1.36 Å)
Cite:The triple helical structure and stability of collagen model peptide with 4(S)-hydroxyprolyl-pro-gly units
Biopolymers, 98, 2011
1IS1
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CRYSTAL STRUCTURE OF RIBOSOME RECYCLING FACTOR FROM VIBRIO PARAHAEMOLYTICUS
Descriptor:RIBOSOME RECYCLING FACTOR
Authors:Nakano, H., Yamaichi, Y., Uchiyama, S., Yoshida, T., Nishina, K., Kato, H., Ohkubo, T., Honda, T., Yamagata, Y., Kobayashi, Y.
Deposit date:2001-11-05
Release date:2003-06-17
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structure and binding mode of a ribosome recycling factor (RRF) from mesophilic bacterium
J.BIOL.CHEM., 278, 2003
1VA1
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SOLUTION STRUCTURE OF TRANSCRIPTION FACTOR SP1 DNA BINDING DOMAIN (ZINC FINGER 1)
Descriptor:Transcription factor Sp1, ZINC ION
Authors:Oka, S., Shiraishi, Y., Yoshida, T., Ohkubo, T., Sugiura, Y., Kobayashi, Y.
Deposit date:2004-02-07
Release date:2005-02-08
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:NMR structure of transcription factor Sp1 DNA binding domain
Biochemistry, 43, 2004
1VA2
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SOLUTION STRUCTURE OF TRANSCRIPTION FACTOR SP1 DNA BINDING DOMAIN (ZINC FINGER 2)
Descriptor:Transcription factor Sp1, ZINC ION
Authors:Oka, S., Shiraishi, Y., Yoshida, T., Ohkubo, T., Sugiura, Y., Kobayashi, Y.
Deposit date:2004-02-07
Release date:2005-02-08
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:NMR structure of transcription factor Sp1 DNA binding domain
Biochemistry, 43, 2004
1VA3
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SOLUTION STRUCTURE OF TRANSCRIPTION FACTOR SP1 DNA BINDING DOMAIN (ZINC FINGER 3)
Descriptor:Transcription factor Sp1, ZINC ION
Authors:Oka, S., Shiraishi, Y., Yoshida, T., Ohkubo, T., Sugiura, Y., Kobayashi, Y.
Deposit date:2004-02-07
Release date:2005-02-08
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:NMR structure of transcription factor Sp1 DNA binding domain
Biochemistry, 43, 2004
1WZB
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CRYSTAL STRUCTURE OF THE COLLAGEN TRIPLE HELIX MODEL [{HYP(R)-HYP(R)-GLY}10]3
Descriptor:Collagen triple helix
Authors:Kawahara, K., Nakamura, S., Nishi, Y., Uchiyama, S., Nishiuchi, Y., Nakazawa, T., Ohkubo, T., Kobayashi, Y.
Deposit date:2005-03-03
Release date:2006-01-31
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Effect of hydration on the stability of the collagen-like triple-helical structure of [4(R)-hydroxyprolyl-4(R)-hydroxyprolylglycine]10
Biochemistry, 44, 2005
4U4P
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CRYSTAL STRUCTURE OF THE HUMAN CONDENSIN SMC HINGE DOMAIN HETERODIMER WITH SHORT COILED COILS
Descriptor:Structural maintenance of chromosomes protein 2, Structural maintenance of chromosomes protein 4
Authors:Uchiyama, S., Kawahara, K., Hosokawa, Y., Fukakusa, S., Oki, H., Nakamura, S., Noda, M., Takino, R., Miyahara, Y., Maruno, T., Kobayashi, Y., Ohkubo, T., Fukui, K.
Deposit date:2014-07-24
Release date:2015-08-26
Method:X-RAY DIFFRACTION (1.89 Å)
Cite:Structural basis for dimer information and DNA recognition of human SMC proteins
to be published
5B6Q
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CRYSTAL STRUCTURE OF MONOMERIC CYTOCHROME C5 FROM SHEWANELLA VIOLACEA
Descriptor:Soluble cytochrome cA, HEME C, IMIDAZOLE
Authors:Masanari, M., Fujii, S., Kawahara, K., Oki, H., Tsujino, H., Maruno, T., Kobayashi, Y., Ohkubo, T., Nishiyama, M., Harada, Y., Wakai, S., Sambongi, Y.
Deposit date:2016-06-01
Release date:2016-10-19
Last modified:2019-10-02
Method:X-RAY DIFFRACTION (1.78 Å)
Cite:Comparative study on stabilization mechanism of monomeric cytochrome c5 from deep-sea piezophilic Shewanella violacea
Biosci.Biotechnol.Biochem., 2016
6A3K
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CRYSTAL STRUCTURE OF CYTOCHROME C' FROM SHEWANELLA BENTHICA DB6705
Descriptor:Cytochrome c, HEME C, PENTAETHYLENE GLYCOL
Authors:Suka, A., Oki, H., Kato, Y., Kawahara, K., Ohkubo, T., Maruno, T., Kobayashi, Y., Fujii, S., Wakai, S., Sambongi, Y.
Deposit date:2018-06-15
Release date:2019-06-12
Last modified:2019-10-02
Method:X-RAY DIFFRACTION (1.71 Å)
Cite:Stability of cytochromes c' from psychrophilic and piezophilic Shewanella species: implications for complex multiple adaptation to low temperature and high hydrostatic pressure.
Extremophiles, 23, 2019
6A3L
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CRYSTAL STRUCTURE OF CYTOCHROME C' FROM SHEWANELLA VIOLACEA DSS12
Descriptor:Cytochrome c, HEME C
Authors:Suka, A., Oki, H., Kato, Y., Kawahara, K., Ohkubo, T., Maruno, T., Kobayashi, Y., Fujii, S., Wakai, S., Sambongi, Y.
Deposit date:2018-06-15
Release date:2019-06-12
Last modified:2019-10-02
Method:X-RAY DIFFRACTION (2.14 Å)
Cite:Stability of cytochromes c' from psychrophilic and piezophilic Shewanella species: implications for complex multiple adaptation to low temperature and high hydrostatic pressure.
Extremophiles, 23, 2019
1GE9
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SOLUTION STRUCTURE OF THE RIBOSOME RECYCLING FACTOR
Descriptor:RIBOSOME RECYCLING FACTOR
Authors:Yoshida, T., Uchiyama, S., Nakano, H., Kashimori, H., Kijima, H., Ohshima, T., Saihara, Y., Ishino, T., Shimahara, T., Yoshida, T., Yokose, K., Ohkubo, T., Kaji, A., Kobayashi, Y.
Deposit date:2000-10-19
Release date:2001-05-16
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution structure of the ribosome recycling factor from Aquifex aeolicus.
Biochemistry, 40, 2001
1ISE
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CRYSTAL STRUCTURE OF A MUTANT OF RIBOSOME RECYCLING FACTOR FROM ESCHERICHIA COLI, ARG132GLY
Descriptor:Ribosome Recycling Factor
Authors:Nakano, H., Yoshida, T., Oka, S., Uchiyama, S., Nishina, K., Ohkubo, T., Kato, H., Yamagata, Y., Kobayashi, Y.
Deposit date:2001-11-30
Release date:2003-10-07
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal structure of a mutant of ribosome recycling factor from Escherichia coli, Arg132Gly
To be Published
1IW4
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SOLUTION STRUCTURE OF ASCIDIAN TRYPSIN INHIBITOR
Descriptor:trypsin inhibitor
Authors:Hemmi, H., Yoshida, T., Kumazaki, T., Nemoto, N., Hasegawa, J., Nishioka, F., Kyogoku, Y., Yokosawa, H., Kobayashi, Y.
Deposit date:2002-04-19
Release date:2002-08-28
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution structure of ascidian trypsin inhibitor determined by nuclear magnetic resonance spectroscopy.
Biochemistry, 41, 2002
1IY5
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SOLUTION STRUCTURE OF WILD TYPE OMSVP3
Descriptor:OMSVP3
Authors:Hemmi, H., Kumazaki, T., Yamazaki, T., Kojima, S., Yoshida, T., Kyogoku, Y., Katsu, M., Yokosawa, H., Miura, K., Kobayashi, Y.
Deposit date:2002-07-23
Release date:2003-03-11
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Inhibitory Specificity Change of Ovomucoid Third Domain of the Silver Pheasant upon Introduction of an Engineered Cys14-Cys39 Bond
BIOCHEMISTRY, 42, 2003
1IY6
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SOLUTION STRUCTURE OF OMSVP3 VARIANT, P14C/N39C
Descriptor:OMSVP3
Authors:Hemmi, H., Kumazaki, T., Yamazaki, T., Kojima, S., Yoshida, T., Kyogoku, Y., Katsu, M., Yokosawa, H., Miura, K., Kobayashi, Y.
Deposit date:2002-07-23
Release date:2003-03-11
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Inhibitory Specificity Change of Ovomucoid Third Domain of the Silver Pheasant upon Introduction of an Engineered Cys14-Cys39 Bond
BIOCHEMISTRY, 42, 2003
1T7H
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X-RAY STRUCTURE OF [LYS(-2)-ARG(-1)-DES(17-21)]-ENDOTHELIN-1 PEPTIDE
Descriptor:Endothelin-1
Authors:Hoh, F., Cerdan, R., Kaas, Q., Nishi, Y., Chiche, L., Kubo, S., Chino, N., Kobayashi, Y., Dumas, C., Aumelas, A.
Deposit date:2004-05-10
Release date:2004-12-21
Last modified:2017-10-11
Method:X-RAY DIFFRACTION (1.13 Å)
Cite:High-resolution X-ray structure of the unexpectedly stable dimer of the [Lys(-2)-Arg(-1)-des(17-21)]endothelin-1 peptide
Biochemistry, 43, 2004
1WPK
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METHYLATED FORM OF N-TERMINAL TRANSCRIPTIONAL REGULATOR DOMAIN OF ESCHERICHIA COLI ADA PROTEIN
Descriptor:ADA regulatory protein, ZINC ION
Authors:Takinowaki, H., Matsuda, Y., Yoshida, T., Kobayashi, Y., Ohkubo, T.
Deposit date:2004-09-07
Release date:2005-09-13
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:The solution structure of the methylated form of the N-terminal 16-kDa domain of Escherichia coli Ada protein
Protein Sci., 15, 2006
1Y1B
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SOLUTION STRUCTURE OF ANEMONIA ELASTASE INHIBITOR
Descriptor:Elastase inhibitor
Authors:Hemmi, H., Kumazaki, T., Yoshizawa-Kumagaye, K., Nishiuchi, Y., Yoshida, T., Ohkubo, T., Kobayashi, Y.
Deposit date:2004-11-18
Release date:2005-07-19
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Structural and Functional Study of an Anemonia Elastase Inhibitor, a "Nonclassical" Kazal-Type Inhibitor from Anemonia sulcata
Biochemistry, 44, 2005
1Y1C
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SOLUTION STRUCTURE OF ANEMONIA ELASTASE INHIBITOR ANALOGUE
Descriptor:Elastase inhibitor
Authors:Hemmi, H., Kumazaki, T., Yoshizawa-Kumagaye, K., Nishiuchi, Y., Yoshida, T., Ohkubo, T., Kobayashi, Y.
Deposit date:2004-11-18
Release date:2005-07-19
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Structural and Functional Study of an Anemonia Elastase Inhibitor, a "Nonclassical" Kazal-Type Inhibitor from Anemonia sulcata
Biochemistry, 44, 2005
2AI5
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SOLUTION STRUCTURE OF CYTOCHROME C552, DETERMINED BY DISTRIBUTED COMPUTING IMPLEMENTATION FOR NMR DATA
Descriptor:Cytochrome c-552, HEME C
Authors:Nakamura, S., Ichiki, S.I., Takashima, H., Uchiyama, S., Hasegawa, J., Kobayashi, Y., Sambongi, Y., Ohkubo, T.
Deposit date:2005-07-29
Release date:2006-05-23
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Structure of Cytochrome c552 from a Moderate Thermophilic Bacterium, Hydrogenophilus thermoluteolus: Comparative Study on the Thermostability of Cytochrome c
Biochemistry, 45, 2006
2D0S
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CRYSTAL STRUCTURE OF THE CYTOCHROME C552 FROM MODERATE THERMOPHILIC BACTERIUM, HYDROGENOPHILUS THERMOLUTEOLUS
Descriptor:cytochrome c, HEME C
Authors:Nakamura, S., Ichiki, S.I., Takashima, H., Uchiyama, S., Hasegawa, J., Kobayashi, Y., Sambongi, Y., Ohkubo, T.
Deposit date:2005-08-08
Release date:2006-05-23
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structure of Cytochrome c552 from a Moderate Thermophilic Bacterium, Hydrogenophilus thermoluteolus: Comparative Study on the Thermostability of Cytochrome c
Biochemistry, 45, 2006
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