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1BQT
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BU of 1bqt by Molmil
THREE-DIMENSIONAL STRUCTURE OF HUMAN INSULIN-LIKE GROWTH FACTOR-I (IGF-I) DETERMINED BY 1H-NMR AND DISTANCE GEOMETRY, 6 STRUCTURES
Descriptor: INSULIN-LIKE GROWTH FACTOR-I
Authors:Sato, A, Nishimura, S, Ohkubo, T, Kyogoku, Y, Koyama, S, Kobayashi, M, Yasuda, T, Kobayashi, Y.
Deposit date:1998-08-18
Release date:1999-05-18
Last modified:2022-02-16
Method:SOLUTION NMR
Cite:Three-dimensional structure of human insulin-like growth factor-I (IGF-I) determined by 1H-NMR and distance geometry.
Int.J.Pept.Protein Res., 41, 1993
7YML
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BU of 7yml by Molmil
Structure of photosynthetic LH1-RC super-complex of Rhodobacter capsulatus
Descriptor: (1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE, 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine, BACTERIOCHLOROPHYLL A, ...
Authors:Tani, K, Kanno, R, Ji, X.-C, Satoh, I, Kobayashi, Y, Nagashima, K.V.P, Hall, M, Yu, L.-J, Kimura, Y, Mizoguchi, A, Humbel, B.M, Madigan, M.T, Wang-Otomo, Z.-Y.
Deposit date:2022-07-28
Release date:2023-02-22
Last modified:2023-03-01
Method:ELECTRON MICROSCOPY (2.6 Å)
Cite:Rhodobacter capsulatus forms a compact crescent-shaped LH1-RC photocomplex.
Nat Commun, 14, 2023
4U4P
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BU of 4u4p by Molmil
Crystal structure of the human condensin SMC hinge domain heterodimer with short coiled coils
Descriptor: Structural maintenance of chromosomes protein 2, Structural maintenance of chromosomes protein 4
Authors:Uchiyama, S, Kawahara, K, Hosokawa, Y, Fukakusa, S, Oki, H, Nakamura, S, Noda, M, Takino, R, Miyahara, Y, Maruno, T, Kobayashi, Y, Ohkubo, T, Fukui, K.
Deposit date:2014-07-24
Release date:2015-08-26
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.89 Å)
Cite:Structural basis for dimer information and DNA recognition of human SMC proteins
to be published
1AYG
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BU of 1ayg by Molmil
SOLUTION STRUCTURE OF CYTOCHROME C-552, NMR, 20 STRUCTURES
Descriptor: CYTOCHROME C-552, HEME C
Authors:Hasegawa, J, Yoshida, T, Yamazaki, T, Sambongi, Y, Yu, Y, Igarashi, Y, Kodama, T, Yamazaki, K, Hakusui, H, Kyogoku, Y, Kobayashi, Y.
Deposit date:1997-11-04
Release date:1998-11-25
Last modified:2022-02-16
Method:SOLUTION NMR
Cite:Solution structure of thermostable cytochrome c-552 from Hydrogenobacter thermophilus determined by 1H-NMR spectroscopy.
Biochemistry, 37, 1998
3FHP
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BU of 3fhp by Molmil
A neutron crystallographic analysis of a porcine 2Zn insulin at 2.0 A resolution
Descriptor: Insulin, ZINC ION
Authors:Iwai, W, Kurihara, K, Yamada, T, Kobayashi, Y, Ohnishi, Y, Tanaka, I, Takahashi, H, Niimura, N.
Deposit date:2008-12-09
Release date:2009-10-20
Last modified:2023-11-01
Method:NEUTRON DIFFRACTION (2 Å)
Cite:A neutron crystallographic analysis of T6 porcine insulin at 2.1 A resolution
Acta Crystallogr.,Sect.D, 65, 2009
1O5P
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BU of 1o5p by Molmil
Solution Structure of holo-Neocarzinostatin
Descriptor: NEOCARZINOSTATIN-CHROMOPHORE, Neocarzinostatin
Authors:Takashima, H, Ishino, T, Yoshida, T, Hasuda, K, Ohkubo, T, Kobayashi, Y.
Deposit date:2003-10-04
Release date:2003-10-14
Last modified:2023-12-27
Method:SOLUTION NMR
Cite:Solution NMR Structure Investigation for Releasing Mechanism of Neocarzinostatin Chromophore from the Holoprotein
J.Biol.Chem., 280, 2005
1DVV
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BU of 1dvv by Molmil
SOLUTION STRUCTURE OF THE QUINTUPLE MUTANT OF CYTOCHROME C-551 FROM PSEUDOMONAS AERUGINOSA
Descriptor: CYTOCHROME C551, PROTOPORPHYRIN IX CONTAINING FE
Authors:Hasegawa, J, Uchiyama, S, Tanimoto, Y, Mizutani, M, Kobayashi, Y, Sambongi, Y, Igarashi, Y.
Deposit date:2000-01-22
Release date:2000-11-29
Last modified:2018-03-14
Method:SOLUTION NMR
Cite:Selected mutations in a mesophilic cytochrome c confer the stability of a thermophilic counterpart.
J.Biol.Chem., 275, 2000
5B6Q
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BU of 5b6q by Molmil
Crystal structure of monomeric cytochrome c5 from Shewanella violacea
Descriptor: HEME C, IMIDAZOLE, Soluble cytochrome cA
Authors:Masanari, M, Fujii, S, Kawahara, K, Oki, H, Tsujino, H, Maruno, T, Kobayashi, Y, Ohkubo, T, Nishiyama, M, Harada, Y, Wakai, S, Sambongi, Y.
Deposit date:2016-06-01
Release date:2016-10-19
Last modified:2019-10-02
Method:X-RAY DIFFRACTION (1.78 Å)
Cite:Comparative study on stabilization mechanism of monomeric cytochrome c5 from deep-sea piezophilic Shewanella violacea
Biosci.Biotechnol.Biochem., 2016
1IS1
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BU of 1is1 by Molmil
Crystal structure of ribosome recycling factor from Vibrio parahaemolyticus
Descriptor: RIBOSOME RECYCLING FACTOR
Authors:Nakano, H, Yamaichi, Y, Uchiyama, S, Yoshida, T, Nishina, K, Kato, H, Ohkubo, T, Honda, T, Yamagata, Y, Kobayashi, Y.
Deposit date:2001-11-05
Release date:2003-06-17
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structure and binding mode of a ribosome recycling factor (RRF) from mesophilic bacterium
J.BIOL.CHEM., 278, 2003
6A3L
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BU of 6a3l by Molmil
Crystal structure of cytochrome c' from Shewanella violacea DSS12
Descriptor: Cytochrome c, HEME C
Authors:Suka, A, Oki, H, Kato, Y, Kawahara, K, Ohkubo, T, Maruno, T, Kobayashi, Y, Fujii, S, Wakai, S, Sambongi, Y.
Deposit date:2018-06-15
Release date:2019-06-12
Last modified:2019-10-02
Method:X-RAY DIFFRACTION (2.14 Å)
Cite:Stability of cytochromes c' from psychrophilic and piezophilic Shewanella species: implications for complex multiple adaptation to low temperature and high hydrostatic pressure.
Extremophiles, 23, 2019
6A3K
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BU of 6a3k by Molmil
Crystal structure of cytochrome c' from Shewanella benthica DB6705
Descriptor: Cytochrome c, HEME C, PENTAETHYLENE GLYCOL
Authors:Suka, A, Oki, H, Kato, Y, Kawahara, K, Ohkubo, T, Maruno, T, Kobayashi, Y, Fujii, S, Wakai, S, Sambongi, Y.
Deposit date:2018-06-15
Release date:2019-06-12
Last modified:2019-10-02
Method:X-RAY DIFFRACTION (1.71 Å)
Cite:Stability of cytochromes c' from psychrophilic and piezophilic Shewanella species: implications for complex multiple adaptation to low temperature and high hydrostatic pressure.
Extremophiles, 23, 2019
5B3I
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BU of 5b3i by Molmil
Homo-dimeric structure of cytochrome c' from Thermophilic Hydrogenophilus thermoluteolus
Descriptor: Cytochrome c prime, HEME C
Authors:Fujii, S, Oki, H, Kawahara, K, Yamane, D, Yamanaka, M, Maruno, T, Kobayashi, Y, Masanari, M, Wakai, S, Nishihara, H, Ohkubo, T, Sambongi, Y.
Deposit date:2016-02-29
Release date:2017-03-01
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.89 Å)
Cite:Structural and functional insights into thermally stable cytochrome c' from a thermophile
Protein Sci., 26, 2017
8JLB
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BU of 8jlb by Molmil
Cryo-EM structure of the 145 bp human nucleosome containing H3.2 C110A mutant
Descriptor: DNA (145-MER), Histone H2A type 1-B/E, Histone H2B type 1-J, ...
Authors:Oishi, T, Hatazawa, S, Kujirai, T, Kato, J, Kobayashi, Y, Ogasawara, M, Akatsu, M, Takizawa, Y, Kurumizaka, H.
Deposit date:2023-06-02
Release date:2023-10-04
Last modified:2023-11-08
Method:ELECTRON MICROSCOPY (2.36 Å)
Cite:Contributions of histone tail clipping and acetylation in nucleosome transcription by RNA polymerase II.
Nucleic Acids Res., 51, 2023
8JLD
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BU of 8jld by Molmil
Cryo-EM structure of the 145 bp human nucleosome containing acetylated H3 tail
Descriptor: DNA (145-MER), Histone H2A type 1-B/E, Histone H2B type 1-J, ...
Authors:Oishi, T, Hatazawa, S, Kujirai, T, Kato, J, Kobayashi, Y, Ogasawara, M, Akatsu, M, Takizawa, Y, Kurumizaka, H.
Deposit date:2023-06-02
Release date:2023-10-04
Last modified:2023-11-15
Method:ELECTRON MICROSCOPY (2.48 Å)
Cite:Contributions of histone tail clipping and acetylation in nucleosome transcription by RNA polymerase II.
Nucleic Acids Res., 51, 2023
8JL9
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BU of 8jl9 by Molmil
Cryo-EM structure of the human nucleosome with scFv
Descriptor: DNA (193-MER), Histone H2A type 1-B/E, Histone H2B type 1-J, ...
Authors:Oishi, T, Hatazawa, S, Kujirai, T, Kato, J, Kobayashi, Y, Ogasawara, M, Akatsu, M, Takizawa, Y, Kurumizaka, H.
Deposit date:2023-06-02
Release date:2023-10-04
Last modified:2023-11-08
Method:ELECTRON MICROSCOPY (2.65 Å)
Cite:Contributions of histone tail clipping and acetylation in nucleosome transcription by RNA polymerase II.
Nucleic Acids Res., 51, 2023
8JLA
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BU of 8jla by Molmil
Cryo-EM structure of the human nucleosome lacking N-terminal region of H2A, H2B, H3, and H4
Descriptor: DNA (193-MER), Histone H2A type 1-B/E, Histone H2B type 1-J, ...
Authors:Oishi, T, Hatazawa, S, Kujirai, T, Kato, J, Kobayashi, Y, Ogasawara, M, Akatsu, M, Takizawa, Y, Kurumizaka, H.
Deposit date:2023-06-02
Release date:2023-10-04
Last modified:2023-11-08
Method:ELECTRON MICROSCOPY (3.44 Å)
Cite:Contributions of histone tail clipping and acetylation in nucleosome transcription by RNA polymerase II.
Nucleic Acids Res., 51, 2023
1GE9
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BU of 1ge9 by Molmil
SOLUTION STRUCTURE OF THE RIBOSOME RECYCLING FACTOR
Descriptor: RIBOSOME RECYCLING FACTOR
Authors:Yoshida, T, Uchiyama, S, Nakano, H, Kashimori, H, Kijima, H, Ohshima, T, Saihara, Y, Ishino, T, Shimahara, T, Yoshida, T, Yokose, K, Ohkubo, T, Kaji, A, Kobayashi, Y.
Deposit date:2000-10-19
Release date:2001-05-16
Last modified:2023-12-27
Method:SOLUTION NMR
Cite:Solution structure of the ribosome recycling factor from Aquifex aeolicus.
Biochemistry, 40, 2001
1ISE
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BU of 1ise by Molmil
Crystal structure of a mutant of ribosome recycling factor from Escherichia coli, Arg132Gly
Descriptor: Ribosome Recycling Factor
Authors:Nakano, H, Yoshida, T, Oka, S, Uchiyama, S, Nishina, K, Ohkubo, T, Kato, H, Yamagata, Y, Kobayashi, Y.
Deposit date:2001-11-30
Release date:2003-10-07
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal structure of a mutant of ribosome recycling factor from Escherichia coli, Arg132Gly
To be Published
1IY6
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BU of 1iy6 by Molmil
Solution structure of OMSVP3 variant, P14C/N39C
Descriptor: OMSVP3
Authors:Hemmi, H, Kumazaki, T, Yamazaki, T, Kojima, S, Yoshida, T, Kyogoku, Y, Katsu, M, Yokosawa, H, Miura, K, Kobayashi, Y.
Deposit date:2002-07-23
Release date:2003-03-11
Last modified:2023-12-27
Method:SOLUTION NMR
Cite:Inhibitory Specificity Change of Ovomucoid Third Domain of the Silver Pheasant upon Introduction of an Engineered Cys14-Cys39 Bond
BIOCHEMISTRY, 42, 2003
1IY5
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BU of 1iy5 by Molmil
Solution structure of wild type OMSVP3
Descriptor: OMSVP3
Authors:Hemmi, H, Kumazaki, T, Yamazaki, T, Kojima, S, Yoshida, T, Kyogoku, Y, Katsu, M, Yokosawa, H, Miura, K, Kobayashi, Y.
Deposit date:2002-07-23
Release date:2003-03-11
Last modified:2023-12-27
Method:SOLUTION NMR
Cite:Inhibitory Specificity Change of Ovomucoid Third Domain of the Silver Pheasant upon Introduction of an Engineered Cys14-Cys39 Bond
BIOCHEMISTRY, 42, 2003
1IW4
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BU of 1iw4 by Molmil
Solution structure of ascidian trypsin inhibitor
Descriptor: trypsin inhibitor
Authors:Hemmi, H, Yoshida, T, Kumazaki, T, Nemoto, N, Hasegawa, J, Nishioka, F, Kyogoku, Y, Yokosawa, H, Kobayashi, Y.
Deposit date:2002-04-19
Release date:2002-08-28
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Solution structure of ascidian trypsin inhibitor determined by nuclear magnetic resonance spectroscopy.
Biochemistry, 41, 2002
5YPZ
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BU of 5ypz by Molmil
Crystal structure of minor pilin CofB from CFA/III complexed with N-terminal peptide fragment of CofJ
Descriptor: CofB, CofJ
Authors:Oki, H, Kawahara, K, Maruno, T, Imai, T, Muroga, Y, Fukakusa, S, Iwashita, T, Kobayashi, Y, Matsuda, S, Kodama, T, Iida, T, Yoshida, T, Ohkubo, T, Nakamura, S.
Deposit date:2017-11-04
Release date:2018-06-27
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (3.521 Å)
Cite:Interplay of a secreted protein with type IVb pilus for efficient enterotoxigenicEscherichia colicolonization.
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
5YQ0
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BU of 5yq0 by Molmil
Crystal structure of secreted protein CofJ from ETEC.
Descriptor: CALCIUM ION, CofJ
Authors:Oki, H, Kawahara, K, Maruno, T, Imai, T, Muroga, Y, Fukakusa, S, Iwashita, T, Kobayashi, Y, Matsuda, S, Kodama, T, Iida, T, Yoshida, T, Ohkubo, T, Nakamura, S.
Deposit date:2017-11-04
Release date:2018-06-27
Last modified:2018-07-25
Method:X-RAY DIFFRACTION (1.76 Å)
Cite:Interplay of a secreted protein with type IVb pilus for efficient enterotoxigenicEscherichia colicolonization
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
5AX6
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BU of 5ax6 by Molmil
The crystal structure of CofB, the minor pilin subunit of CFA/III from human enterotoxigenic Escherichia coli.
Descriptor: ACETATE ION, CofB
Authors:Kawahara, K, Oki, K, Fukaksua, F, Maruno, T, Kobayashi, Y, Daisuke, M, Taniguchi, T, Honda, T, Iida, T, Nakamura, S, Ohkubo, T.
Deposit date:2015-07-16
Release date:2016-03-09
Last modified:2020-02-26
Method:X-RAY DIFFRACTION (1.88 Å)
Cite:Homo-trimeric Structure of the Type IVb Minor Pilin CofB Suggests Mechanism of CFA/III Pilus Assembly in Human Enterotoxigenic Escherichia coli
J.Mol.Biol., 428, 2016
1VA2
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BU of 1va2 by Molmil
Solution Structure of Transcription Factor Sp1 DNA Binding Domain (Zinc Finger 2)
Descriptor: Transcription factor Sp1, ZINC ION
Authors:Oka, S, Shiraishi, Y, Yoshida, T, Ohkubo, T, Sugiura, Y, Kobayashi, Y.
Deposit date:2004-02-07
Release date:2005-02-08
Last modified:2023-12-27
Method:SOLUTION NMR
Cite:NMR structure of transcription factor Sp1 DNA binding domain
Biochemistry, 43, 2004

 

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