Author results

3VMF
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ARCHAEAL PROTEIN
Descriptor:Elongation factor 1-alpha, Peptide chain release factor subunit 1, GUANOSINE-5'-TRIPHOSPHATE, ...
Authors:Kobayashi, K., Saito, K., Ishitani, R., Ito, K., Nureki, O.
Deposit date:2011-12-12
Release date:2012-07-25
Last modified:2013-06-26
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structural basis for translation termination by archaeal RF1 and GTP-bound EF1alpha complex
Nucleic Acids Res., 40, 2012
3WXM
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CRYSTAL STRUCTURE OF ARCHAEAL PELOTA AND GTP-BOUND EF1 ALPHA COMPLEX
Descriptor:Elongation factor 1-alpha, Protein pelota homolog, GUANOSINE-5'-TRIPHOSPHATE, ...
Authors:Kobayashi, K., Ishitani, R., Nureki, O.
Deposit date:2014-08-04
Release date:2014-09-03
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structural basis for mRNA surveillance by archaeal Pelota and GTP-bound EF1 alpha complex
Proc.Natl.Acad.Sci.USA, 107, 2010
1F3K
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THREE-DIMENSIONAL SOLUTION STRUCTURE OF OMEGA-CONOTOXIN TXVII, AN L-TYPE CALCIUM CHANNEL BLOCKER
Descriptor:OMEGA-CONOTOXIN TXVII
Authors:Kobayashi, K., Sasaki, T., Sato, K., Kohno, T.
Deposit date:2000-06-05
Release date:2000-12-13
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Three-dimensional solution structure of omega-conotoxin TxVII, an L-type calcium channel blocker.
Biochemistry, 39, 2000
1V4Q
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THREE-DIMENSIONAL SOLUTION STRUCTURE OF THE ANALOGUE PEPTIDE OF OMEGA-CONOTOXIN MVIIC
Descriptor:omega-conotoxin MVIIC
Authors:Kobayashi, K., Sasaki, T., Sato, K., Kohno, T.
Deposit date:2003-11-17
Release date:2005-03-01
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Three-dimensional solution structure of the analogue peptide of omega-conotoxin MVIIC
To be Published
1WQB
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THREE-DIMENSIONAL SOLUTION STRUCUTRE OF APTOTOXIN VII, FROM THE VENOM OF A TRAP-DOOR SPIDER
Descriptor:Aptotoxin VII
Authors:Kobayashi, K., Kim, J.-I., Sato, K., Kohno, T.
Deposit date:2004-09-27
Release date:2005-12-13
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Three-dimensional Solution Structure of Aptotoxin VII, from the Venom of a Trap-door Spider
To be Published
3WTR
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CRYSTAL STRUCTURE OF E. COLI YFCM BOUND TO CO(II)
Descriptor:Uncharacterized protein, COBALT (II) ION
Authors:Kobayashi, K., Ishii, R., Ishitani, R., Nureki, O.
Deposit date:2014-04-19
Release date:2015-04-01
Last modified:2017-11-22
Method:X-RAY DIFFRACTION (1.96 Å)
Cite:The non-canonical hydroxylase structure of YfcM reveals a metal ion-coordination motif required for EF-P hydroxylation
Nucleic Acids Res., 42, 2014
4PDN
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CRYSTAL STRUCTURE OF E. COLI YFCM
Descriptor:Uncharacterized protein, MAGNESIUM ION
Authors:Kobayashi, K., Ishii, R., Ishitani, R., Nureki, O.
Deposit date:2014-04-19
Release date:2015-03-04
Last modified:2015-04-08
Method:X-RAY DIFFRACTION (1.448 Å)
Cite:The non-canonical hydroxylase structure of YfcM reveals a metal ion-coordination motif required for EF-P hydroxylation.
Nucleic Acids Res., 42, 2014
6FRK
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STRUCTURE OF A PREHANDOVER MAMMALIAN RIBOSOMAL SRP AND SRP RECEPTOR TARGETING COMPLEX
Descriptor:Canis lupus familiaris RNA, 7SL, cytoplasmic 1 (RN7SL1), ...
Authors:Kobayashi, K., Jomaa, A., Ban, N.
Deposit date:2018-02-16
Release date:2018-03-28
Last modified:2018-05-02
Method:ELECTRON MICROSCOPY (3.7 Å)
Cite:Structure of a prehandover mammalian ribosomal SRP·SRP receptor targeting complex.
Science, 360, 2018
3AGK
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CRYSTAL STRUCTURE OF ARCHAEAL TRANSLATION TERMINATION FACTOR, ARF1
Descriptor:Peptide chain release factor subunit 1
Authors:Kobayashi, K., Kikuno, I., Ishitani, R., Ito, K., Nureki, O.
Deposit date:2010-04-01
Release date:2010-11-03
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Omnipotent role of archaeal elongation factor 1 alpha (EF1{alpha}) in translational elongation and termination, and quality control of protein synthesis
Proc.Natl.Acad.Sci.USA, 107, 2010
1OMG
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NMR STUDY OF OMEGA-CONOTOXIN MVIIA
Descriptor:OMEGA-CONOTOXIN MVIIA
Authors:Kohno, T., Kim, J.-I., Kobayashi, K., Kodera, Y., Maeda, T., Sato, K.
Deposit date:1995-04-26
Release date:1996-04-03
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Three-dimensional structure in solution of the calcium channel blocker omega-conotoxin MVIIA.
Biochemistry, 34, 1995
1PRU
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PURINE REPRESSOR DNA-BINDING DOMAIN DNA BINDING
Descriptor:PURINE REPRESSOR
Authors:Nagadoi, A., Morikawa, S., Nakamura, H., Enari, M., Kobayashi, K., Yamamoto, H., Sampei, G., Mizobuchi, K., Schumacher, M.A., Brennan, R.G., Nishimura, Y.
Deposit date:1995-05-08
Release date:1996-03-08
Last modified:2012-02-22
Method:SOLUTION NMR
Cite:Structural comparison of the free and DNA-bound forms of the purine repressor DNA-binding domain.
Structure, 3, 1995
1PRV
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PURINE REPRESSOR DNA-BINDING DOMAIN DNA BINDING
Descriptor:PURINE REPRESSOR
Authors:Nagadoi, A., Morikawa, S., Nakamura, H., Enari, M., Kobayashi, K., Yamamoto, H., Sampei, G., Mizobuchi, K., Schumacher, M.A., Brennan, R.G., Nishimura, Y.
Deposit date:1995-05-08
Release date:1996-03-08
Last modified:2012-02-22
Method:SOLUTION NMR
Cite:Structural comparison of the free and DNA-bound forms of the purine repressor DNA-binding domain.
Structure, 3, 1995
1QCM
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AMYLOID BETA PEPTIDE (25-35), NMR, 20 STRUCTURES
Descriptor:AMYLOID BETA PEPTIDE
Authors:Kohno, T., Kobayashi, K., Maeda, T., Sato, K., Takashima, A.
Deposit date:1996-07-19
Release date:1997-07-07
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Three-dimensional structures of the amyloid beta peptide (25-35) in membrane-mimicking environment.
Biochemistry, 35, 1996
2ZHG
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CRYSTAL STRUCTURE OF SOXR IN COMPLEX WITH DNA
Descriptor:DNA (5'-D(*DGP*DCP*DCP*DTP*DCP*DAP*DAP*DGP*DTP*DTP*DAP*DAP*DCP*DTP*DTP*DGP*DAP*DGP*DGP*DC)-3'), Redox-sensitive transcriptional activator soxR, FE2/S2 (INORGANIC) CLUSTER, ...
Authors:Watanabe, S., Kita, A., Kobayashi, K., Miki, K.
Deposit date:2008-02-05
Release date:2008-03-25
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Crystal structure of the [2Fe-2S] oxidative-stress sensor SoxR bound to DNA
Proc.Natl.Acad.Sci.Usa, 105, 2008
2ZHH
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CRYSTAL STRUCTURE OF SOXR
Descriptor:Redox-sensitive transcriptional activator soxR, FE2/S2 (INORGANIC) CLUSTER, 2,3-DIHYDROXY-1,4-DITHIOBUTANE
Authors:Watanabe, S., Kita, A., Kobayashi, K., Miki, K.
Deposit date:2008-02-05
Release date:2008-03-25
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Crystal structure of the [2Fe-2S] oxidative-stress sensor SoxR bound to DNA
Proc.Natl.Acad.Sci.Usa, 105, 2008
3VGB
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CRYSTAL STRUCTURE OF GLYCOSYLTREHALOSE TREHALOHYDROLASE (GTHASE) FROM SULFOLOBUS SOLFATARICUS KM1
Descriptor:Malto-oligosyltrehalose trehalohydrolase, CITRATE ANION, GLYCEROL
Authors:Okazaki, N., Tamada, T., Feese, M.D., Kato, M., Miura, Y., Komeda, T., Kobayashi, K., Kondo, K., Kuroki, R.
Deposit date:2011-08-09
Release date:2012-06-20
Method:X-RAY DIFFRACTION (2.65 Å)
Cite:Substrate recognition mechanism of a glycosyltrehalose trehalohydrolase from Sulfolobus solfataricus KM1.
Protein Sci., 21, 2012
3VGD
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CTYSTAL STRUCTURE OF GLYCOSYLTREHALOSE TREHALOHYDROLASE (D252E)
Descriptor:Malto-oligosyltrehalose trehalohydrolase, CITRATE ANION, GLYCEROL
Authors:Okazaki, N., Tamada, T., Feese, M.D., Kato, M., Miura, Y., Komeda, T., Kobayashi, K., Kondo, K., Kuroki, R.
Deposit date:2011-08-09
Release date:2012-06-20
Last modified:2017-11-22
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Substrate recognition mechanism of a glycosyltrehalose trehalohydrolase from Sulfolobus solfataricus KM1.
Protein Sci., 21, 2012
3VGE
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CRYSTAL STRUCTURE OF GLYCOSYLTREHALOSE TREHALOHYDROLASE (D252S)
Descriptor:Malto-oligosyltrehalose trehalohydrolase, CITRATE ANION, GLYCEROL
Authors:Okazaki, N., Tamada, T., Feese, M.D., Kato, M., Miura, Y., Komeda, T., Kobayashi, K., Kondo, K., Kuroki, R.
Deposit date:2011-08-09
Release date:2012-06-20
Last modified:2017-11-22
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Substrate recognition mechanism of a glycosyltrehalose trehalohydrolase from Sulfolobus solfataricus KM1.
Protein Sci., 21, 2012
3VGF
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CRYSTAL STRUCTURE OF GLYCOSYLTREHALOSE TREHALOHYDROLASE (D252S) COMPLEXED WITH MALTOTRIOSYLTREHALOSE
Descriptor:Malto-oligosyltrehalose trehalohydrolase, ALPHA-D-GLUCOSE, CITRATE ANION, ...
Authors:Okazaki, N., Tamada, T., Feese, M.D., Kato, M., Miura, Y., Komeda, T., Kobayashi, K., Kondo, K., Kuroki, R.
Deposit date:2011-08-09
Release date:2012-06-20
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Substrate recognition mechanism of a glycosyltrehalose trehalohydrolase from Sulfolobus solfataricus KM1.
Protein Sci., 21, 2012
3VGG
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CRYSTAL STRUCTURE OF GLYCOSYLTREHALOSE TREHALOHYDROLASE (E283Q) COMPLEXED WITH MALTOHEPTAOSE
Descriptor:Malto-oligosyltrehalose trehalohydrolase, ALPHA-D-GLUCOSE, CITRATE ANION, ...
Authors:Okazaki, N., Tamada, T., Feese, M.D., Kato, M., Miura, Y., Komeda, T., Kobayashi, K., Kondo, K., Kuroki, R.
Deposit date:2011-08-09
Release date:2012-06-20
Method:X-RAY DIFFRACTION (2.66 Å)
Cite:Substrate recognition mechanism of a glycosyltrehalose trehalohydrolase from Sulfolobus solfataricus KM1.
Protein Sci., 21, 2012
3VGH
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CRYSTAL STRUCTURE OF GLYCOSYLTREHALOSE TREHALOHYDROLASE (E283Q) COMPLEXED WITH MALTOTRIOSYLTREHALOSE
Descriptor:Malto-oligosyltrehalose trehalohydrolase, ALPHA-D-GLUCOSE, CITRATE ANION, ...
Authors:Okazaki, N., Tamada, T., Feese, M.D., Kato, M., Miura, Y., Komeda, T., Kobayashi, K., Kondo, K., Kuroki, R.
Deposit date:2011-08-09
Release date:2012-06-20
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Substrate recognition mechanism of a glycosyltrehalose trehalohydrolase from Sulfolobus solfataricus KM1.
Protein Sci., 21, 2012
5ZZN
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CRYSTAL STRUCTURE OF PHOTOSYSTEM II FROM AN SQDG-DEFICIENT MUTANT OF THERMOSYNECHOCOCCUS ELONGATUS
Descriptor:Photosystem II protein D1 1, Photosystem II CP47 reaction center protein, Photosystem II CP43 reaction center protein, ...
Authors:Nakajima, Y., Umena, Y., Nagao, R., Endo, K., Kobayashi, K., Akita, F., Suga, M., Wada, H., Noguchi, T., Shen, J.R.
Deposit date:2018-06-03
Release date:2018-08-01
Last modified:2018-10-03
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Thylakoid membrane lipid sulfoquinovosyl-diacylglycerol (SQDG) is required for full functioning of photosystem II inThermosynechococcus elongatus.
J. Biol. Chem., 293, 2018
1EH9
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CRYSTAL STRUCTURE OF SULFOLOBUS SOLFATARICUS GLYCOSYLTREHALOSE TREHALOHYDROLASE
Descriptor:GLYCOSYLTREHALOSE TREHALOHYDROLASE
Authors:Feese, M.D., Kato, Y., Tamada, T., Kato, M., Komeda, T., Kobayashi, K., Kuroki, R.
Deposit date:2000-02-19
Release date:2001-02-19
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (3 Å)
Cite:Crystal structure of glycosyltrehalose trehalohydrolase from the hyperthermophilic archaeum Sulfolobus solfataricus.
J.Mol.Biol., 301, 2000
1EHA
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CRYSTAL STRUCTURE OF GLYCOSYLTREHALOSE TREHALOHYDROLASE FROM SULFOLOBUS SOLFATARICUS
Descriptor:GLYCOSYLTREHALOSE TREHALOHYDROLASE
Authors:Feese, M.D., Kato, Y., Tamada, T., Kato, M., Komeda, T., Kobayashi, K., Kuroki, R.
Deposit date:2000-02-19
Release date:2001-02-19
Last modified:2018-03-14
Method:X-RAY DIFFRACTION (3 Å)
Cite:Crystal structure of glycosyltrehalose trehalohydrolase from the hyperthermophilic archaeum Sulfolobus solfataricus.
J.Mol.Biol., 301, 2000
1BM0
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CRYSTAL STRUCTURE OF HUMAN SERUM ALBUMIN
Descriptor:SERUM ALBUMIN
Authors:Sugio, S., Kashima, A., Mochizuki, S., Noda, M., Kobayashi, K.
Deposit date:1998-07-28
Release date:1999-07-28
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal structure of human serum albumin at 2.5 A resolution.
Protein Eng., 12, 1999
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