Author results

2DVJ
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PHOSPHORYLATED CRK-II
Descriptor:V-crk sarcoma virus CT10 oncogene homolog, isoform a
Authors:Kobashigawa, Y., Inagaki, F.
Deposit date:2006-07-31
Release date:2007-05-08
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Structural basis for the transforming activity of human cancer-related signaling adaptor protein CRK.
Nat.Struct.Mol.Biol., 14, 2007
2EYV
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SH2 DOMAIN OF CT10-REGULATED KINASE
Descriptor:v-crk sarcoma virus CT10 oncogene homolog isoform a
Authors:Kobashigawa, Y., Tanaka, S., Inagaki, F.
Deposit date:2005-11-10
Release date:2006-11-10
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Structural basis for the transforming activity of human cancer-related signaling adaptor protein CRK.
Nat.Struct.Mol.Biol., 14, 2007
2EYW
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N-TERMINAL SH3 DOMAIN OF CT10-REGULATED KINASE
Descriptor:v-crk sarcoma virus CT10 oncogene homolog isoform a
Authors:Kobashigawa, Y., Tanaka, S., Inagaki, F.
Deposit date:2005-11-10
Release date:2006-11-10
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Structural basis for the transforming activity of human cancer-related signaling adaptor protein CRK.
Nat.Struct.Mol.Biol., 14, 2007
2EYX
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C-TERMINAL SH3 DOMAIN OF CT10-REGULATED KINASE
Descriptor:v-crk sarcoma virus CT10 oncogene homolog isoform a
Authors:Kobashigawa, Y., Tanaka, S., Inagaki, F.
Deposit date:2005-11-10
Release date:2006-11-10
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Structural basis for the transforming activity of human cancer-related signaling adaptor protein CRK.
Nat.Struct.Mol.Biol., 14, 2007
2EYY
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CT10-REGULATED KINASE ISOFORM I
Descriptor:v-crk sarcoma virus CT10 oncogene homolog isoform a
Authors:Kobashigawa, Y., Tanaka, S., Inagaki, F.
Deposit date:2005-11-10
Release date:2006-11-10
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Structural basis for the transforming activity of human cancer-related signaling adaptor protein CRK.
Nat.Struct.Mol.Biol., 14, 2007
2EYZ
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CT10-REGULATED KINASE ISOFORM II
Descriptor:v-crk sarcoma virus CT10 oncogene homolog isoform a
Authors:Kobashigawa, Y., Tanaka, S., Inagaki, F.
Deposit date:2005-11-10
Release date:2006-11-10
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Structural basis for the transforming activity of human cancer-related signaling adaptor protein CRK.
Nat.Struct.Mol.Biol., 14, 2007
1I56
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SOLUTION STRUCTURE OF CA2+-BOUND STATE OF CANINE MILK LYSOZYME
Descriptor:LYSOZYME C
Authors:Kobashigawa, Y., Tsuda, S., Nitta, K.
Deposit date:2001-02-25
Release date:2002-02-27
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution structure of Ca2+-bound state of canine milk lysozyme
To be Published
2RSE
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NMR STRUCTURE OF FKBP12-MTOR FRB DOMAIN-RAPAMYCIN COMPLEX STRUCTURE DETERMINED BASED ON PCS
Descriptor:Peptidyl-prolyl cis-trans isomerase FKBP1A, Serine/threonine-protein kinase mTOR, TERBIUM(III) ION
Authors:Kobashigawa, Y., Ushio, M., Saio, T., Inagaki, F.
Deposit date:2012-01-25
Release date:2012-05-30
Method:SOLUTION NMR
Cite:Convenient method for resolving degeneracies due to symmetry of the magnetic susceptibility tensor and its application to pseudo contact shift-based protein-protein complex structure determination.
J.Biomol.Nmr, 53, 2012
3VGO
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CRYSTAL STRUCTURE OF THE N-TERMINAL FRAGMENT OF CBL-B
Descriptor:E3 ubiquitin-protein ligase CBL-B
Authors:Kobashigawa, Y., Noda, N.N., Inagaki, F.
Deposit date:2011-08-18
Release date:2011-12-14
Last modified:2013-07-10
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Autoinhibition and phosphorylation-induced activation mechanisms of human cancer and autoimmune disease-related E3 protein Cbl-b
Proc.Natl.Acad.Sci.USA, 108, 2011
2KBT
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ATTACHMENT OF AN NMR-INVISIBLE SOLUBILITY ENHANCEMENT TAG (INSET) USING A SORTASE-MEDIATED PROTEIN LIGATION METHOD
Descriptor:chimera of Proto-oncogene vav, linker, Immunoglobulin G-binding protein G
Authors:Kumeta, H., Kobashigawa, Y., Ogura, K., Inagaki, F.
Deposit date:2008-12-07
Release date:2009-02-03
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Attachment of an NMR-invisible solubility enhancement tag using a sortase-mediated protein ligation method
J.Biomol.Nmr, 43, 2009
2KE4
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THE NMR STRUCTURE OF THE TC10 AND CDC42 INTERACTING DOMAIN OF CIP4
Descriptor:Cdc42-interacting protein 4
Authors:Kumeta, H., Kanoh, D., Kobashigawa, Y., Inagaki, F.
Deposit date:2009-01-22
Release date:2009-03-03
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:The NMR structure of the TC10- and Cdc42-interacting domain of CIP4.
J.Biomol.Nmr, 44, 2009
2KFK
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SOLUTION STRUCTURE OF BEM1P PB1 DOMAIN COMPLEXED WITH CDC24P PB1 DOMAIN
Descriptor:Bud emergence protein 1, Cell division control protein 24
Authors:Kobashigawa, Y., Yoshinaga, S., Tandai, T., Ogura, K., Inagaki, F.
Deposit date:2009-02-23
Release date:2009-10-06
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:NMR structure of the heterodimer of Bem1 and Cdc24 PB1 domains from Saccharomyces cerevisiae
J.Biochem., 146, 2009
2LDR
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SOLUTION STRUCTURE OF HELIX-RING DOMAIN OF CBL-B IN THE TYR363 PHOSPHORYLATED FORM
Descriptor:E3 ubiquitin-protein ligase CBL-B, ZINC ION
Authors:Kumeta, H., Kobashigawa, Y., Inagaki, F.
Deposit date:2011-06-01
Release date:2011-12-14
Last modified:2013-07-10
Method:SOLUTION NMR
Cite:Autoinhibition and phosphorylation-induced activation mechanisms of human cancer and autoimmune disease-related E3 protein Cbl-b
Proc.Natl.Acad.Sci.USA, 108, 2011
3VX6
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CRYSTAL STRUCTURE OF KLUYVEROMYCES MARXIANUS ATG7NTD
Descriptor:E1
Authors:Yamaguchi, M., Matoba, K., Sawada, R., Fujioka, Y., Nakatogawa, H., Yamamoto, H., Kobashigawa, Y., Hoshida, H., Akada, R., Ohsumi, Y., Noda, N.N., Inagaki, F.
Deposit date:2012-09-11
Release date:2012-11-14
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Non-canonical recognition and ambiguous Ubl-loading of two distinct E2s by autophagy-essential E1, Atg7
To be Published
3VX7
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CRYSTAL STRUCTURE OF KLUYVEROMYCES MARXIANUS ATG7NTD-ATG10 COMPLEX
Descriptor:E1, E2
Authors:Yamaguchi, M., Matoba, K., Sawada, R., Fujioka, Y., Nakatogawa, H., Yamamoto, H., Kobashigawa, Y., Hoshida, H., Akada, R., Ohsumi, Y., Noda, N.N., Inagaki, F.
Deposit date:2012-09-11
Release date:2012-11-14
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Non-canonical recognition and ambiguous Ubl-loading of two distinct E2s by autophagy-essential E1, Atg7
To be Published
2LPU
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SOLUTION STRUCTURES OF KMATG10
Descriptor:KmAtg10
Authors:Yamaguchi, M., Noda, N.N., Yamamoto, H., Shima, T., Kumeta, H., Kobashigawa, Y., Akada, R., Ohsumi, Y., Inagaki, F.
Deposit date:2012-02-19
Release date:2012-08-01
Method:SOLUTION NMR
Cite:Structural insights into atg10-mediated formation of the autophagy-essential atg12-atg5 conjugate
Structure, 20, 2012
3VQI
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CRYSTAL STRUCTURE OF KLUYVEROMYCES MARXIANUS ATG5
Descriptor:Atg5, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, SULFATE ION
Authors:Yamaguchi, M., Noda, N.N., Yamamoto, H., Shima, T., Kumeta, H., Kobashigawa, Y., Akada, R., Ohsumi, Y., Inagaki, F.
Deposit date:2012-03-24
Release date:2012-08-01
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structural insights into atg10-mediated formation of the autophagy-essential atg12-atg5 conjugate
Structure, 20, 2012
1IY3
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SOLUTION STRUCTURE OF THE HUMAN LYSOZYME AT 4 DEGREE C
Descriptor:Lysozyme
Authors:Kumeta, H., Miura, A., Kobashigawa, Y., Miura, K., Oka, C., Nitta, K., Nemoto, N., Tsuda, S.
Deposit date:2002-07-15
Release date:2002-07-31
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Low-temperature-induced structural changes in human lysozyme elucidated by three-dimensional NMR spectroscopy
Biochemistry, 42, 2003
1IY4
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SOLUTION STRUCTURE OF THE HUMAN LYSOZYME AT 35 DEGREE C
Descriptor:Lysozyme
Authors:Kumeta, H., Miura, A., Kobashigawa, Y., Miura, K., Oka, C., Nitta, K., Nemoto, N., Tsuda, S.
Deposit date:2002-07-15
Release date:2002-07-31
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Low-temperature-induced structural changes in human lysozyme elucidated by three-dimensional NMR spectroscopy
Biochemistry, 42, 2003
2KFJ
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SOLUTION STRUCTURE OF THE LOOP DELETION MUTANT OF PB1 DOMAIN OF CDC24P
Descriptor:Cell division control protein 24
Authors:Ogura, K., Tandai, T., Yoshinaga, S., Kobashigawa, Y., Kumeta, H., Inagaki, F.
Deposit date:2009-02-22
Release date:2009-10-06
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:NMR structure of the heterodimer of Bem1 and Cdc24 PB1 domains from Saccharomyces cerevisiae
J.Biochem., 146, 2009
2LHH
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SOLUTION STRUCTURE OF CA2+-BOUND YCAM
Descriptor:Calmodulin, CALCIUM ION
Authors:Ogura, K., Takahashi, K., Kobashigawa, Y., Yoshida, R., Itoh, H., Yazawa, M., Inagaki, F.
Deposit date:2011-08-10
Release date:2012-08-29
Method:SOLUTION NMR
Cite:Solution structures of yeast Saccharomyces cerevisiae calmodulin in calcium- and target peptide-bound states reveal similarities and differences to vertebrate calmodulin.
Genes Cells, 17, 2012
2LHI
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SOLUTION STRUCTURE OF CA2+/CNA1 PEPTIDE-BOUND YCAM
Descriptor:Calmodulin, Serine/threonine-protein phosphatase 2B catalytic subunit A1, CALCIUM ION
Authors:Ogura, K., Takahashi, K., Kobashigawa, Y., Yoshida, R., Itoh, H., Yazawa, M., Inagaki, F.
Deposit date:2011-08-10
Release date:2012-08-29
Method:SOLUTION NMR
Cite:Solution structures of yeast Saccharomyces cerevisiae calmodulin in calcium- and target peptide-bound states reveal similarities and differences to vertebrate calmodulin.
Genes Cells, 17, 2012
2RPV
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SOLUTION STRUCTURE OF GB1 WITH LBT PROBE
Descriptor:Immunoglobulin G-binding protein G, LANTHANUM (III) ION
Authors:Saio, T., Ogura, K., Yokochi, M., Kobashigawa, Y., Inagaki, F.
Deposit date:2008-10-28
Release date:2009-09-15
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Two-point anchoring of a lanthanide-binding peptide to a target protein enhances the paramagnetic anisotropic effect
J.Biomol.Nmr, 44, 2009
3VX8
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CRYSTAL STRUCTURE OF ARABIDOPSIS THALIANA ATG7NTD-ATG3 COMPLEX
Descriptor:Ubiquitin-like modifier-activating enzyme atg7, Autophagy-related protein 3
Authors:Matoba, K., Fujioka, Y., Noda, N.N.
Deposit date:2012-09-11
Release date:2012-11-14
Method:X-RAY DIFFRACTION (3.11 Å)
Cite:Non-canonical recognition and ambiguous Ubl-loading of two distinct E2s by autophagy-essential E1, Atg7
To be Published
5B86
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CRYSTAL STRUCTURE OF M-SEC
Descriptor:Tumor necrosis factor alpha-induced protein 2
Authors:Yamashita, M., Sato, Y., Yamagata, A., Fukai, S.
Deposit date:2016-06-12
Release date:2016-10-12
Method:X-RAY DIFFRACTION (3.017 Å)
Cite:Distinct Roles for the N- and C-terminal Regions of M-Sec in Plasma Membrane Deformation during Tunneling Nanotube Formation.
Sci Rep, 6, 2016
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