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4WH2
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BU of 4wh2 by Molmil
N-acetylhexosamine 1-kinase in complex with ADP
Descriptor: ACETIC ACID, ADENOSINE-5'-DIPHOSPHATE, GLYCEROL, ...
Authors:Sato, M, Arakawa, T, Nam, Y.W, Nishimoto, M, Kitaoka, M, Fushinobu, S.
Deposit date:2014-09-19
Release date:2015-02-18
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.847 Å)
Cite:Open-close structural change upon ligand binding and two magnesium ions required for the catalysis of N-acetylhexosamine 1-kinase
Biochim.Biophys.Acta, 1854, 2015
4WH1
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BU of 4wh1 by Molmil
N-Acetylhexosamine 1-kinase (ligand free)
Descriptor: ACETIC ACID, GLYCEROL, N-acetylhexosamine 1-kinase
Authors:Sato, M, Arakawa, T, Nam, Y.W, Nishimoto, M, Kitaoka, M, Fushinobu, S.
Deposit date:2014-09-19
Release date:2015-02-11
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Open-close structural change upon ligand binding and two magnesium ions required for the catalysis of N-acetylhexosamine 1-kinase
Biochim.Biophys.Acta, 1854, 2015
4WH3
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BU of 4wh3 by Molmil
N-acetylhexosamine 1-kinase in complex with ATP
Descriptor: ACETIC ACID, ADENOSINE-5'-TRIPHOSPHATE, GLYCEROL, ...
Authors:Sato, M, Arakawa, T, Nam, Y.W, Nishimoto, M, Kitaoka, M, Fushinobu, S.
Deposit date:2014-09-19
Release date:2015-02-18
Last modified:2020-02-05
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Open-close structural change upon ligand binding and two magnesium ions required for the catalysis of N-acetylhexosamine 1-kinase
Biochim.Biophys.Acta, 1854, 2015
3A3V
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BU of 3a3v by Molmil
Crystal structure of reducing-end-xylose releasing exo-oligoxylanase Y198F mutant
Descriptor: GLYCEROL, NICKEL (II) ION, Xylanase Y
Authors:Hidaka, M, Fushinobu, S, Honda, Y, Kitaoka, M.
Deposit date:2009-06-22
Release date:2009-11-03
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.39 Å)
Cite:Structural explanation for the acquisition of glycosynthase activity
J.Biochem., 147, 2010
2DRR
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BU of 2drr by Molmil
Crystal structure of reducing-end-xylose releasing exo-oligoxylanase D263N mutant
Descriptor: GLYCEROL, NICKEL (II) ION, Xylanase Y
Authors:Fushinobu, S, Hidaka, M, Honda, Y, Wakagi, T, Shoun, H, Kitaoka, M.
Deposit date:2006-06-12
Release date:2006-06-27
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Structural explanation for the acquisition of glycosynthase activity
J.Biochem., 2009
2DRS
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BU of 2drs by Molmil
Crystal structure of reducing-end-xylose releasing exo-oligoxylanase D263S mutant
Descriptor: GLYCEROL, NICKEL (II) ION, Xylanase Y
Authors:Fushinobu, S, Hidaka, M, Honda, Y, Wakagi, T, Shoun, H, Kitaoka, M.
Deposit date:2006-06-12
Release date:2006-06-27
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structural explanation for the acquisition of glycosynthase activity
J.Biochem., 2009
2DRO
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BU of 2dro by Molmil
Crystal structure of reducing-end-xylose releasing exo-oligoxylanase D263C mutant
Descriptor: GLYCEROL, NICKEL (II) ION, Xylanase Y
Authors:Fushinobu, S, Hidaka, M, Honda, Y, Wakagi, T, Shoun, H, Kitaoka, M.
Deposit date:2006-06-12
Release date:2006-06-27
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structural explanation for the acquisition of glycosynthase activity
J.Biochem., 2009
2DRQ
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BU of 2drq by Molmil
Crystal structure of reducing-end-xylose releasing exo-oligoxylanase D263G mutant
Descriptor: GLYCEROL, NICKEL (II) ION, Xylanase Y
Authors:Fushinobu, S, Hidaka, M, Honda, Y, Wakagi, T, Shoun, H, Kitaoka, M.
Deposit date:2006-06-12
Release date:2006-06-27
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structural explanation for the acquisition of glycosynthase activity
J.Biochem., 2009
6K0H
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BU of 6k0h by Molmil
Crystal Structure of UDP-glucose 4-epimerase from Bifidobacterium longum in complex with NAD+ and UDP-GlcNAc
Descriptor: DI(HYDROXYETHYL)ETHER, MAGNESIUM ION, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, ...
Authors:Nam, Y.-W, Nishimoto, M, Arakawa, T, Kitaoka, M, Fushinobu, S.
Deposit date:2019-05-06
Release date:2019-08-07
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural basis for broad substrate specificity of UDP-glucose 4-epimerase in the human milk oligosaccharide catabolic pathway of Bifidobacterium longum.
Sci Rep, 9, 2019
6K0I
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BU of 6k0i by Molmil
Crystal Structure of UDP-glucose 4-epimerase from Bifidobacterium longum in complex with NAD+ and UDP-Glc
Descriptor: NICOTINAMIDE-ADENINE-DINUCLEOTIDE, UDP-glucose 4-epimerase, URIDINE-5'-DIPHOSPHATE-GLUCOSE
Authors:Nam, Y.-W, Nishimoto, M, Arakawa, T, Kitaoka, M, Fushinobu, S.
Deposit date:2019-05-06
Release date:2019-08-07
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural basis for broad substrate specificity of UDP-glucose 4-epimerase in the human milk oligosaccharide catabolic pathway of Bifidobacterium longum.
Sci Rep, 9, 2019
6K0G
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BU of 6k0g by Molmil
Crystal Structure of UDP-glucose 4-epimerase from Bifidobacterium longum in complex with NAD+ and UDP
Descriptor: MAGNESIUM ION, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, UDP-glucose 4-epimerase, ...
Authors:Nam, Y.-W, Nishimoto, M, Arakawa, T, Kitaoka, M, Fushinobu, S.
Deposit date:2019-05-06
Release date:2019-08-07
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural basis for broad substrate specificity of UDP-glucose 4-epimerase in the human milk oligosaccharide catabolic pathway of Bifidobacterium longum.
Sci Rep, 9, 2019
1WU5
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BU of 1wu5 by Molmil
Crystal structure of reducing-end-xylose releasing exo-oligoxylanase complexed with xylose
Descriptor: GLYCEROL, NICKEL (II) ION, beta-D-xylopyranose, ...
Authors:Fushinobu, S, Hidaka, M, Honda, Y, Wakagi, T, Shoun, H, Kitaoka, M.
Deposit date:2004-12-01
Release date:2005-02-22
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structural Basis for the Specificity of the Reducing End Xylose-releasing Exo-oligoxylanase from Bacillus halodurans C-125
J.Biol.Chem., 280, 2005
1WU4
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BU of 1wu4 by Molmil
Crystal structure of reducing-end-xylose releasing exo-oligoxylanase
Descriptor: GLYCEROL, NICKEL (II) ION, xylanase Y
Authors:Fushinobu, S, Hidaka, M, Honda, Y, Wakagi, T, Shoun, H, Kitaoka, M.
Deposit date:2004-12-01
Release date:2005-02-22
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.35 Å)
Cite:Structural Basis for the Specificity of the Reducing End Xylose-releasing Exo-oligoxylanase from Bacillus halodurans C-125
J.Biol.Chem., 280, 2005
1WU6
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BU of 1wu6 by Molmil
Crystal structure of reducing-end-xylose releasing exo-oligoxylanase E70A mutant complexed with xylobiose
Descriptor: GLYCEROL, NICKEL (II) ION, beta-D-xylopyranose-(1-4)-beta-D-xylopyranose, ...
Authors:Fushinobu, S, Hidaka, M, Honda, Y, Wakagi, T, Shoun, H, Kitaoka, M.
Deposit date:2004-12-01
Release date:2005-02-22
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Structural Basis for the Specificity of the Reducing End Xylose-releasing Exo-oligoxylanase from Bacillus halodurans C-125
J.Biol.Chem., 280, 2005
2DEP
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BU of 2dep by Molmil
Crystal Structure of xylanase B from Clostridium stercorarium F9
Descriptor: Thermostable celloxylanase
Authors:Fushinobu, S, Nishimoto, M, Miyanaga, A, Kitaoka, M, Hayashi, K.
Deposit date:2006-02-16
Release date:2007-01-16
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Molecular anatomy of the alkaliphilic xylanase from Bacillus halodurans C-125
To be Published
1V7V
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BU of 1v7v by Molmil
Crystal structure of Vibrio proteolyticus chitobiose phosphorylase
Descriptor: CALCIUM ION, chitobiose phosphorylase
Authors:Hidaka, M, Honda, Y, Nirasawa, S, Kitaoka, M, Hayashi, K, Wakagi, T, Shoun, H, Fushinobu, S.
Deposit date:2003-12-24
Release date:2004-06-22
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Chitobiose phosphorylase from Vibrio proteolyticus, a member of glycosyl transferase family 36, has a clan GH-L-like (alpha/alpha)(6) barrel fold.
Structure, 12, 2004
1V7W
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BU of 1v7w by Molmil
Crystal structure of Vibrio proteolyticus chitobiose phosphorylase in complex with GlcNAc
Descriptor: 2-acetamido-2-deoxy-alpha-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, ...
Authors:Hidaka, M, Honda, Y, Nirasawa, S, Kitaoka, M, Hayashi, K, Wakagi, T, Shoun, H, Fushinobu, S.
Deposit date:2003-12-24
Release date:2004-06-22
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Chitobiose phosphorylase from Vibrio proteolyticus, a member of glycosyl transferase family 36, has a clan GH-L-like (alpha/alpha)(6) barrel fold.
Structure, 12, 2004
1V7X
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BU of 1v7x by Molmil
Crystal structure of Vibrio proteolyticus chitobiose phosphorylase in complex with GlcNAc and sulfate
Descriptor: 2-acetamido-2-deoxy-alpha-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, ...
Authors:Hidaka, M, Honda, Y, Nirasawa, S, Kitaoka, M, Hayashi, K, Wakagi, T, Shoun, H, Fushinobu, S.
Deposit date:2003-12-24
Release date:2004-06-22
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2 Å)
Cite:Chitobiose phosphorylase from Vibrio proteolyticus, a member of glycosyl transferase family 36, has a clan GH-L-like (alpha/alpha)(6) barrel fold.
Structure, 12, 2004
4UNI
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BU of 4uni by Molmil
beta-(1,6)-galactosidase from Bifidobacterium animalis subsp. lactis Bl-04 in complex with galactose
Descriptor: BETA-GALACTOSIDASE, DI(HYDROXYETHYL)ETHER, GLYCEROL, ...
Authors:Viborg, A.H, Fredslund, F, Katayama, T, Nielsen, S.K, Svensson, B, Kitaoka, M, Lo Leggio, L, Abou Hachem, M.
Deposit date:2014-05-28
Release date:2014-10-15
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:A beta 1-6/ beta 1-3 galactosidase from Bifidobacterium animalis subsp. lactis Bl-04 gives insight into sub-specificities of beta-galactoside catabolism within Bifidobacterium.
Mol. Microbiol., 2014
4UOQ
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BU of 4uoq by Molmil
Nucleophile mutant (E324A) of beta-(1,6)-galactosidase from Bifidobacterium animalis subsp. lactis Bl-04
Descriptor: BETA-GALACTOSIDASE, DI(HYDROXYETHYL)ETHER, TETRAETHYLENE GLYCOL, ...
Authors:Viborg, A.H, Fredslund, F, Katayama, T, Nielsen, S.K, Svensson, B, Kitaoka, M, Lo Leggio, L, Abou Hachem, M.
Deposit date:2014-06-09
Release date:2014-10-22
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:A beta 1-6/ beta 1-3 galactosidase from Bifidobacterium animalis subsp. lactis Bl-04 gives insight into sub-specificities of beta-galactoside catabolism within Bifidobacterium.
Mol. Microbiol., 2014
4UOZ
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BU of 4uoz by Molmil
beta-(1,6)-galactosidase from Bifidobacterium animalis subsp. lactis Bl-04 nucleophile mutant E324A in complex with galactose
Descriptor: BETA-GALACTOSIDASE, TRIETHYLENE GLYCOL, ZINC ION, ...
Authors:Viborg, A.H, Fredslund, F, Katayama, T, Nielsen, S.K, Svensson, B, Kitaoka, M, Lo Leggio, L, Abou Hachem, M.
Deposit date:2014-06-11
Release date:2014-10-15
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:A beta 1-6/ beta 1-3 galactosidase from Bifidobacterium animalis subsp. lactis Bl-04 gives insight into sub-specificities of beta-galactoside catabolism within Bifidobacterium.
Mol. Microbiol., 2014
3WFZ
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BU of 3wfz by Molmil
Crystal structure of Galacto-N-Biose/Lacto-N-Biose I Phosphorylase C236Y Mutant
Descriptor: 2-acetamido-2-deoxy-alpha-D-glucopyranose, Lacto-N-biose phosphorylase
Authors:Koyama, Y, Hidaka, M, Kawakami, M, Nishimoto, M, Kitaoka, M.
Deposit date:2013-07-25
Release date:2013-10-09
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Directed evolution to enhance thermostability of galacto-N-biose/lacto-N-biose I phosphorylase.
Protein Eng.Des.Sel., 26, 2013
3QFZ
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BU of 3qfz by Molmil
Crystal Structure of Cellvibrio gilvus Cellobiose Phosphorylase Complexed with Sulfate and 1-Deoxynojirimycin
Descriptor: 1-DEOXYNOJIRIMYCIN, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, Cellobiose Phosphorylase, ...
Authors:Fushinobu, S, Hidaka, M, Hayashi, A.M, Wakagi, T, Shoun, H, Kitaoka, M.
Deposit date:2011-01-24
Release date:2011-09-21
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.39 Å)
Cite:Interactions between glycoside hydrolase family 94 cellobiose phosphorylase and glucosidase inhibitors
J.Appl.Glyosci., 58, 2011
3QFY
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BU of 3qfy by Molmil
Crystal Structure of Cellvibrio gilvus Cellobiose Phosphorylase Complexed with Sulfate and Isofagomine
Descriptor: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, 5-HYDROXYMETHYL-3,4-DIHYDROXYPIPERIDINE, Cellobiose Phosphorylase, ...
Authors:Fushinobu, S, Hidaka, M, Hayashi, A.M, Wakagi, T, Shoun, H, Kitaoka, M.
Deposit date:2011-01-24
Release date:2011-09-21
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Interactions between glycoside hydrolase family 94 cellobiose phosphorylase and glucosidase inhibitors
J.Appl.Glyosci., 58, 2011
3QG0
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BU of 3qg0 by Molmil
Crystal Structure of Cellvibrio gilvus Cellobiose Phosphorylase Complexed with Phosphate and 1-Deoxynojirimycin
Descriptor: 1-DEOXYNOJIRIMYCIN, Cellobiose Phosphorylase, PHOSPHATE ION, ...
Authors:Fushinobu, S, Hidaka, M, Hayashi, A.M, Wakagi, T, Shoun, H, Kitaoka, M.
Deposit date:2011-01-24
Release date:2011-09-21
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Interactions between glycoside hydrolase family 94 cellobiose phosphorylase and glucosidase inhibitors
J.Appl.Glyosci., 58, 2011

 

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