Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
1FVP
DownloadVisualize
BU of 1fvp by Molmil
FLAVOPROTEIN 390
Descriptor: 6-(3-TETRADECANOIC ACID) FLAVINE MONONUCLEOTIDE, FLAVOPROTEIN 390
Authors:Kita, A, Miki, K.
Deposit date:1995-07-07
Release date:1995-10-15
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structure of flavoprotein FP390 from a luminescent bacterium Photobacterium phosphoreum refined at 2.7 A resolution.
Acta Crystallogr.,Sect.D, 52, 1996
1MPY
DownloadVisualize
BU of 1mpy by Molmil
STRUCTURE OF CATECHOL 2,3-DIOXYGENASE (METAPYROCATECHASE) FROM PSEUDOMONAS PUTIDA MT-2
Descriptor: ACETONE, CATECHOL 2,3-DIOXYGENASE, FE (II) ION
Authors:Kita, A, Kita, S, Fujisawa, I, Inaka, K, Ishida, T, Horiike, K, Nozaki, M, Miki, K.
Deposit date:1998-10-20
Release date:1999-05-18
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:An archetypical extradiol-cleaving catecholic dioxygenase: the crystal structure of catechol 2,3-dioxygenase (metapyrocatechase) from Ppseudomonas putida mt-2.
Structure Fold.Des., 7, 1999
1IT6
DownloadVisualize
BU of 1it6 by Molmil
CRYSTAL STRUCTURE OF THE COMPLEX BETWEEN CALYCULIN A AND THE CATALYTIC SUBUNIT OF PROTEIN PHOSPHATASE 1
Descriptor: CALYCULIN A, MANGANESE (II) ION, SERINE/THREONINE PROTEIN PHOSPHATASE 1 GAMMA (PP1-GAMMA) CATALYTIC SUBUNIT
Authors:Kita, A, Matsunaga, S, Takai, A, Kataiwa, H, Wakimoto, T, Fusetani, N, Isobe, M, Miki, K.
Deposit date:2002-01-09
Release date:2002-05-22
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of the complex between calyculin A and the catalytic subunit of protein phosphatase 1.
Structure, 10, 2002
6K8G
DownloadVisualize
BU of 6k8g by Molmil
H/D exchanged Hen egg-white lysozyme
Descriptor: CHLORIDE ION, Lysozyme C, SODIUM ION
Authors:Kita, A, Morimoto, Y.
Deposit date:2019-06-11
Release date:2020-06-17
Last modified:2021-01-13
Method:NEUTRON DIFFRACTION (2 Å), X-RAY DIFFRACTION
Cite:Hydrogen/deuterium exchange behavior in tetragonal hen egg-white lysozyme crystals affected by solution state.
J.Appl.Crystallogr., 53, 2020
6JBC
DownloadVisualize
BU of 6jbc by Molmil
Phosphotransferase related to CoA biosynthesis pathway
Descriptor: 1,2-ETHANEDIOL, CALCIUM ION, GLYCEROL, ...
Authors:Kita, A, Kishimoto, A, Shimosaka, T, Tomita, H, Yokooji, Y, Imanaka, T, Atomi, H, Miki, K.
Deposit date:2019-01-25
Release date:2020-01-29
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Crystal structure of pantoate kinase from Thermococcus kodakarensis.
Proteins, 88, 2020
6JBD
DownloadVisualize
BU of 6jbd by Molmil
Phosphotransferase-ATP complex related to CoA biosynthesis pathway
Descriptor: 1,2-ETHANEDIOL, ADENOSINE-5'-TRIPHOSPHATE, CALCIUM ION, ...
Authors:Kita, A, Kishimoto, A, Shimosaka, T, Tomita, H, Yokooji, Y, Imanaka, T, Atomi, H, Miki, K.
Deposit date:2019-01-25
Release date:2020-01-29
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal structure of pantoate kinase from Thermococcus kodakarensis.
Proteins, 88, 2020
7FGV
DownloadVisualize
BU of 7fgv by Molmil
H/D exchanged Hen egg-white lysozyme denatured in heat condition and refolded in solution
Descriptor: CHLORIDE ION, Lysozyme C, SODIUM ION
Authors:Kita, A, Morimoto, Y.
Deposit date:2021-07-28
Release date:2022-02-09
Last modified:2022-05-11
Method:NEUTRON DIFFRACTION (2 Å), X-RAY DIFFRACTION
Cite:Hydrogen/Deuterium Exchange Behavior During Denaturing/Refolding Processes Determined in Tetragonal Hen Egg-White Lysozyme Crystals.
Mol Biotechnol., 64, 2022
7FGU
DownloadVisualize
BU of 7fgu by Molmil
H/D exchanged Hen egg-white lysozyme denatured in basic conditions and refolded in solution
Descriptor: CHLORIDE ION, Lysozyme C, SODIUM ION
Authors:Kita, A, Morimoto, Y.
Deposit date:2021-07-28
Release date:2022-02-09
Last modified:2022-05-11
Method:NEUTRON DIFFRACTION (2 Å), X-RAY DIFFRACTION
Cite:Hydrogen/Deuterium Exchange Behavior During Denaturing/Refolding Processes Determined in Tetragonal Hen Egg-White Lysozyme Crystals.
Mol Biotechnol., 64, 2022
7FG8
DownloadVisualize
BU of 7fg8 by Molmil
H/D exchanged Hen egg-white lysozyme denatured in acidic conditions and refolded in solution
Descriptor: CHLORIDE ION, Lysozyme C, SODIUM ION
Authors:Kita, A, Morimoto, Y.
Deposit date:2021-07-26
Release date:2022-02-09
Last modified:2022-05-11
Method:NEUTRON DIFFRACTION (2 Å), X-RAY DIFFRACTION
Cite:Hydrogen/Deuterium Exchange Behavior During Denaturing/Refolding Processes Determined in Tetragonal Hen Egg-White Lysozyme Crystals.
Mol Biotechnol., 64, 2022
5B06
DownloadVisualize
BU of 5b06 by Molmil
Lysozyme (denatured by NaOD and refolded)
Descriptor: 1,2-ETHANEDIOL, CHLORIDE ION, Lysozyme C, ...
Authors:Kita, A, Morimoto, Y.
Deposit date:2015-10-28
Release date:2016-01-13
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:An Effective Deuterium Exchange Method for Neutron Crystal Structure Analysis with Unfolding-Refolding Processes
Mol Biotechnol., 58, 2016
5B05
DownloadVisualize
BU of 5b05 by Molmil
Lysozyme (control experiment)
Descriptor: 1,2-ETHANEDIOL, CHLORIDE ION, Lysozyme C, ...
Authors:Kita, A, Morimoto, Y.
Deposit date:2015-10-28
Release date:2016-01-13
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:An Effective Deuterium Exchange Method for Neutron Crystal Structure Analysis with Unfolding-Refolding Processes
Mol Biotechnol., 58, 2016
5B07
DownloadVisualize
BU of 5b07 by Molmil
Lysozyme (denatured by DCl and refolded)
Descriptor: 1,2-ETHANEDIOL, CHLORIDE ION, Lysozyme C, ...
Authors:Kita, A, Morimoto, Y.
Deposit date:2015-10-28
Release date:2016-01-13
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:An Effective Deuterium Exchange Method for Neutron Crystal Structure Analysis with Unfolding-Refolding Processes
Mol Biotechnol., 58, 2016
5X4A
DownloadVisualize
BU of 5x4a by Molmil
SLL-2-Forssman antigen tetrasaccharides complex
Descriptor: 2-acetamido-2-deoxy-alpha-D-galactopyranose-(1-3)-2-acetamido-2-deoxy-beta-D-galactopyranose-(1-3)-alpha-D-galactopyranose-(1-4)-beta-D-galactopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Galactose-binding lectin, ...
Authors:Kita, A, Miki, K.
Deposit date:2017-02-11
Release date:2017-09-20
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (3.4 Å)
Cite:Crystal structure of octocoral lectin SLL-2 complexed with Forssman antigen tetrasaccharide.
Glycobiology, 2017
1X0P
DownloadVisualize
BU of 1x0p by Molmil
Structure of a cyanobacterial BLUF protein, Tll0078
Descriptor: FLAVIN-ADENINE DINUCLEOTIDE, hypothetical protein Tll0078
Authors:Kita, A, Okajima, K, Morimoto, Y, Ikeuchi, M, Miki, K.
Deposit date:2005-03-27
Release date:2005-06-07
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structure of a Cyanobacterial BLUF Protein, Tll0078, Containing a Novel FAD-binding Blue Light Sensor Domain
J.Mol.Biol., 349, 2005
2ZSK
DownloadVisualize
BU of 2zsk by Molmil
Crystal structure of PH1733, an aspartate racemase homologue, from Pyrococcus horikoshii OT3
Descriptor: 226aa long hypothetical aspartate racemase
Authors:Kita, A, Tasaki, S, Yohda, M, Miki, K.
Deposit date:2008-09-12
Release date:2008-10-21
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.55 Å)
Cite:Crystal structure of PH1733, an aspartate racemase homologue, from pyrococcus horikoshii OT3
Proteins, 74, 2009
3WMQ
DownloadVisualize
BU of 3wmq by Molmil
Crystal structure of the complex between SLL-2 and GalNAc.
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, 2-acetamido-2-deoxy-alpha-D-galactopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Kita, A, Jimbo, M, Sakai, R, Morimoto, Y, Miki, K.
Deposit date:2013-11-22
Release date:2015-01-14
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystal structure of a symbiosis-related lectin from octocoral.
Glycobiology, 25, 2015
3WMP
DownloadVisualize
BU of 3wmp by Molmil
Crystal structure of SLL-2
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, 2-acetamido-2-deoxy-alpha-D-galactopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Kita, A, Jimbo, M, Sakai, R, Morimoto, Y, Miki, K.
Deposit date:2013-11-22
Release date:2015-01-14
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of a symbiosis-related lectin from octocoral.
Glycobiology, 25, 2015
7E6P
DownloadVisualize
BU of 7e6p by Molmil
Fab-amyloid beta fragment complex
Descriptor: 1,2-ETHANEDIOL, Amyloid beta fragment with an intramolecular disulfide bond at positions 17 and 28, DI(HYDROXYETHYL)ETHER, ...
Authors:Kita, A, Irie, K, Irie, Y, Miki, K.
Deposit date:2021-02-23
Release date:2022-01-05
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Characterization of a Conformation-Restricted Amyloid beta Peptide and Immunoreactivity of Its Antibody in Human AD brain.
Acs Chem Neurosci, 12, 2021
8H8Q
DownloadVisualize
BU of 8h8q by Molmil
Fab-amyloid beta fragment complex at neutral pH
Descriptor: CHLORIDE ION, Fab, GLN-LYS-CYS-VAL-PHE-PHE-ALA-GLU-ASP-VAL-GLY-SER-ASN-CYS-GLY, ...
Authors:Kita, A, Irie, K, Irie, Y, Matsushima, Y, Miki, K.
Deposit date:2022-10-24
Release date:2023-10-25
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Fab-amyloid beta fragment complex at neutral pH
To Be Published
3AJX
DownloadVisualize
BU of 3ajx by Molmil
Crystal Structure of 3-Hexulose-6-Phosphate Synthase
Descriptor: 3-hexulose-6-phosphate synthase, CHLORIDE ION, MAGNESIUM ION, ...
Authors:Kita, A, Orita, I, Yurimoto, H, Kato, N, Sakai, Y, Miki, K.
Deposit date:2010-06-24
Release date:2010-11-03
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystal structure of 3-hexulose-6-phosphate synthase, a member of the orotidine 5'-monophosphate decarboxylase suprafamily
Proteins, 78, 2010
1QGI
DownloadVisualize
BU of 1qgi by Molmil
CHITOSANASE FROM BACILLUS CIRCULANS
Descriptor: 2-amino-2-deoxy-beta-D-glucopyranose-(1-4)-2-amino-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, PROTEIN (CHITOSANASE), SULFATE ION
Authors:Saito, J, Kita, A, Higuchi, Y, Nagata, Y, Ando, A, Miki, K.
Deposit date:1999-04-28
Release date:1999-10-25
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystal structure of chitosanase from Bacillus circulans MH-K1 at 1.6-A resolution and its substrate recognition mechanism.
J.Biol.Chem., 274, 1999
7BXV
DownloadVisualize
BU of 7bxv by Molmil
11A1 antibody-peptide complex
Descriptor: 1,2-ETHANEDIOL, Fab of the 11A1 antibody H chain, Fab of the 11A1 antibody L chain, ...
Authors:Irie, K, Irie, Y, Kita, A, Miki, K.
Deposit date:2020-04-21
Release date:2021-04-21
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:APOE epsilon 4 allele advances the age-dependent decline of amyloid beta clearance in the human cortex.
Biorxiv, 2022
7Y3J
DownloadVisualize
BU of 7y3j by Molmil
24B3 antibody-peptide complex
Descriptor: 24B3 Heavy chain, 24B3 Light chain, ALA-LEU-VAL-PHE-PHE-ALA-PRO-ALA-VAL-GLY-SER
Authors:Irie, K, Irie, Y, Kita, A, Miki, K.
Deposit date:2022-06-11
Release date:2022-08-17
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structural basis of the 24B3 antibody against the toxic conformer of amyloid beta with a turn at positions 22 and 23.
Biochem.Biophys.Res.Commun., 621, 2022
1JFL
DownloadVisualize
BU of 1jfl by Molmil
CRYSTAL STRUCTURE DETERMINATION OF ASPARTATE RACEMASE FROM AN ARCHAEA
Descriptor: ASPARTATE RACEMASE
Authors:Liu, L.J, Iwata, K, Kita, A, Kawarabayasi, Y, Yohda, M, Miki, K.
Deposit date:2001-06-21
Release date:2002-06-05
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal structure of aspartate racemase from Pyrococcus horikoshii OT3 and its implications for molecular mechanism of PLP-independent racemization.
J.Mol.Biol., 319, 2002
1WMF
DownloadVisualize
BU of 1wmf by Molmil
Crystal Structure of alkaline serine protease KP-43 from Bacillus sp. KSM-KP43 (oxidized form, 1.73 angstrom)
Descriptor: 1,4-DIETHYLENE DIOXIDE, CALCIUM ION, GLYCEROL, ...
Authors:Nonaka, T, Fujihashi, M, Kita, A, Saeki, K, Ito, S, Horikoshi, K, Miki, K.
Deposit date:2004-07-08
Release date:2004-09-14
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.73 Å)
Cite:The Crystal Structure of an Oxidatively Stable Subtilisin-like Alkaline Serine Protease, KP-43, with a C-terminal {beta}-Barrel Domain
J.Biol.Chem., 279, 2004

 

123>

217705

PDB entries from 2024-03-27

PDB statisticsPDBj update infoContact PDBjnumon