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5B3D
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STRUCTURE OF A FLAGELLAR TYPE III SECRETION CHAPERONE, FLGN
Descriptor:Flagella synthesis protein FlgN
Authors:Nakanishi, Y., Kinoshita, M., Namba, K., Minamino, T., Imada, K.
Deposit date:2016-02-15
Release date:2016-06-01
Last modified:2016-09-07
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Rearrangements of alpha-helical structures of FlgN chaperone control the binding affinity for its cognate substrates during flagellar type III export
Mol.Microbiol., 101, 2016
3VXV
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CRYSTAL STRUCTURE OF METHYL CPG BINDING DOMAIN OF MBD4 IN COMPLEX WITH THE 5MCG/TG SEQUENCE
Descriptor:Methyl-CpG-binding domain protein 4, DNA (5'-D(*GP*TP*CP*AP*CP*TP*AP*CP*(5CM)P*GP*GP*AP*CP*A)-3'), DNA (5'-D(*GP*TP*CP*TP*GP*GP*TP*AP*GP*TP*GP*AP*CP*T)-3'), ...
Authors:Otani, J., Arita, K., Kato, T., Kinoshita, M., Ariyoshi, M., Shirakawa, M.
Deposit date:2012-09-21
Release date:2013-01-16
Last modified:2013-08-14
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural basis of the versatile DNA recognition ability of the methyl-CpG binding domain of methyl-CpG binding domain protein 4
J.Biol.Chem., 288, 2013
3VXX
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CRYSTAL STRUCTURE OF METHYL CPG BINDING DOMAIN OF MBD4 IN COMPLEX WITH THE 5MCG/5MCG SEQUENCE
Descriptor:Methyl-CpG-binding domain protein 4, DNA (5'-D(*GP*TP*CP*AP*CP*TP*AP*CP*(5CM)P*GP*GP*AP*CP*A)-3'), DNA (5'-D(*GP*TP*CP*(5CM)P*GP*GP*TP*AP*GP*TP*GP*AP*CP*T)-3'), ...
Authors:Otani, J., Arita, K., Kato, T., Kinoshita, M., Ariyoshi, M., Shirakawa, M.
Deposit date:2012-09-21
Release date:2013-01-16
Last modified:2013-08-14
Method:X-RAY DIFFRACTION (2.204 Å)
Cite:Structural basis of the versatile DNA recognition ability of the methyl-CpG binding domain of methyl-CpG binding domain protein 4
J.Biol.Chem., 288, 2013
3VYB
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CRYSTAL STRUCTURE OF METHYL CPG BINDING DOMAIN OF MBD4 IN COMPLEX WITH THE 5MCG/HMCG SEQUENCE
Descriptor:Methyl-CpG-binding domain protein 4, DNA (5'-D(*GP*TP*CP*AP*CP*TP*AP*CP*(5CM)P*GP*GP*AP*CP*A)-3'), DNA (5'-D(*GP*TP*CP*(5HC)P*GP*GP*TP*AP*GP*TP*GP*AP*CP*T)-3'), ...
Authors:Otani, J., Arita, K., Kato, T., Kinoshita, M., Ariyoshi, M., Shirakawa, M.
Deposit date:2012-09-22
Release date:2013-01-16
Last modified:2013-08-14
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structural basis of the versatile DNA recognition ability of the methyl-CpG binding domain of methyl-CpG binding domain protein 4
J.Biol.Chem., 288, 2013
3VYQ
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CRYSTAL STRUCTURE OF THE METHYL CPG BINDING DOMAIN OF MBD4 IN COMPLEX WITH THE 5MCG/TG SEQUENCE IN SPACE GROUP P1
Descriptor:Methyl-CpG-binding domain protein 4, DNA (5'-D(*AP*CP*AP*TP*CP*(5CM)P*GP*GP*TP*GP*A)-3'), DNA (5'-D(*TP*CP*AP*CP*TP*GP*GP*AP*TP*GP*T)-3'), ...
Authors:Otani, J., Arita, K., Kato, T., Kinoshita, M., Ariyoshi, M., Shirakawa, M.
Deposit date:2012-10-02
Release date:2013-01-16
Last modified:2013-08-14
Method:X-RAY DIFFRACTION (2.525 Å)
Cite:Structural basis of the versatile DNA recognition ability of the methyl-CpG binding domain of methyl-CpG binding domain protein 4
J.Biol.Chem., 288, 2013
2RU7
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REFINED STRUCTURE OF RNA APTAMER IN COMPLEX WITH THE PARTIAL BINDING PEPTIDE OF PRION PROTEIN
Descriptor:RNA_(5'-R(*GP*GP*AP*GP*GP*AP*GP*GP*AP*GP*GP*A)-3'), P16 peptide from Major prion protein
Authors:Hayashi, T., Oshima, H., Mashima, T., Nagata, T., Katahira, M., Kinoshita, M.
Deposit date:2013-12-24
Release date:2014-05-21
Method:SOLUTION NMR
Cite:Binding of an RNA aptamer and a partial peptide of a prion protein: crucial importance of water entropy in molecular recognition
Nucleic Acids Res., 2014
3W1C
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STRUCTURE OF A PRESSURE SENSITIVE YFP VARIANT YFP-G1
Descriptor:Green Fluorescent protein
Authors:Imada, K., Yoshizawa, K., Kinoshita, M., Watanabe, T.M.
Deposit date:2012-11-14
Release date:2013-10-02
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Glycine insertion makes yellow fluorescent protein sensitive to hydrostatic pressure.
Plos One, 8, 2013
3W1D
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STRUCTURE OF A PRESSURE SENSITIVE YFP VARIANT YFP-G3
Descriptor:Green Fluorescent protein
Authors:Imada, K., Yoshizawa, K., Kinoshita, M., Watanabe, T.M.
Deposit date:2012-11-14
Release date:2013-10-02
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Glycine insertion makes yellow fluorescent protein sensitive to hydrostatic pressure.
Plos One, 8, 2013
5YC8
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CRYSTAL STRUCTURE OF RATIONALLY THERMOSTABILIZED M2 MUSCARINIC ACETYLCHOLINE RECEPTOR BOUND WITH NMS (HG-DERIVATIVE)
Descriptor:Muscarinic acetylcholine receptor M2,Redesigned apo-cytochrome b562,Muscarinic acetylcholine receptor M2, N-methyl scopolamine, MERCURY (II) ION
Authors:Suno, R., Maeda, S., Yasuda, S., Yamashita, K., Hirata, K., Horita, S., Tawaramoto, M.S., Tsujimoto, H., Murata, T., Kinoshita, M., Yamamoto, M., Kobilka, B.K., Iwata, S., Kobayashi, T.
Deposit date:2017-09-06
Release date:2018-11-21
Last modified:2018-11-28
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structural insights into the subtype-selective antagonist binding to the M2muscarinic receptor
Nat. Chem. Biol., 14, 2018
5ZK3
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CRYSTAL STRUCTURE OF RATIONALLY THERMOSTABILIZED M2 MUSCARINIC ACETYLCHOLINE RECEPTOR BOUND WITH QNB
Descriptor:Muscarinic acetylcholine receptor M2,Apo-cytochrome b562,Muscarinic acetylcholine receptor M2, (3R)-1-azabicyclo[2.2.2]oct-3-yl hydroxy(diphenyl)acetate
Authors:Suno, R., Maeda, S., Yasuda, S., Yamashita, K., Hirata, K., Horita, S., Tawaramoto, M.S., Tsujimoto, H., Murata, T., Kinoshita, M., Yamamoto, M., Kobilka, B.K., Iwata, S., Kobayashi, T.
Deposit date:2018-03-23
Release date:2018-11-21
Last modified:2018-11-28
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structural insights into the subtype-selective antagonist binding to the M2muscarinic receptor
Nat. Chem. Biol., 14, 2018
5ZK8
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CRYSTAL STRUCTURE OF M2 MUSCARINIC ACETYLCHOLINE RECEPTOR BOUND WITH NMS
Descriptor:Muscarinic acetylcholine receptor M2,Redesigned apo-cytochrome b562,Muscarinic acetylcholine receptor M2, N-methyl scopolamine
Authors:Suno, R., Maeda, S., Yasuda, S., Yamashita, K., Hirata, K., Horita, S., Tawaramoto, M.S., Tsujimoto, H., Murata, T., Kinoshita, M., Yamamoto, M., Kobilka, B.K., Iwata, S., Kobayashi, T.
Deposit date:2018-03-23
Release date:2018-11-21
Last modified:2018-12-12
Method:X-RAY DIFFRACTION (3 Å)
Cite:Structural insights into the subtype-selective antagonist binding to the M2muscarinic receptor
Nat. Chem. Biol., 14, 2018
5ZKB
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CRYSTAL STRUCTURE OF RATIONALLY THERMOSTABILIZED M2 MUSCARINIC ACETYLCHOLINE RECEPTOR BOUND WITH AF-DX 384
Descriptor:Muscarinic acetylcholine receptor M2,Apo-cytochrome b562,Muscarinic acetylcholine receptor M2, N-[2-[(2S)-2-[(dipropylamino)methyl]piperidin-1-yl]ethyl]-6-oxidanylidene-5H-pyrido[2,3-b][1,4]benzodiazepine-11-carboxamide
Authors:Suno, R., Maeda, S., Yasuda, S., Yamashita, K., Hirata, K., Horita, S., Tawaramoto, M.S., Tsujimoto, H., Murata, T., Kinoshita, M., Yamamoto, M., Kobilka, B.K., Iwata, S., Kobayashi, T.
Deposit date:2018-03-23
Release date:2018-11-21
Last modified:2018-11-28
Method:X-RAY DIFFRACTION (2.95 Å)
Cite:Structural insights into the subtype-selective antagonist binding to the M2muscarinic receptor
Nat. Chem. Biol., 14, 2018
5ZKC
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CRYSTAL STRUCTURE OF RATIONALLY THERMOSTABILIZED M2 MUSCARINIC ACETYLCHOLINE RECEPTOR BOUND WITH NMS
Descriptor:Muscarinic acetylcholine receptor M2,Apo-cytochrome b562,Muscarinic acetylcholine receptor M2, N-methyl scopolamine
Authors:Suno, R., Maeda, S., Yasuda, S., Yamashita, K., Hirata, K., Horita, S., Tawaramoto, M.S., Tsujimoto, H., Murata, T., Kinoshita, M., Yamamoto, M., Kobilka, B.K., Iwata, S., Kobayashi, T.
Deposit date:2018-03-23
Release date:2018-11-21
Last modified:2018-11-28
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structural insights into the subtype-selective antagonist binding to the M2muscarinic receptor
Nat. Chem. Biol., 14, 2018
6AI0
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STRUCTURE OF THE 328-692 FRAGMENT OF FLHA (ORTHORHOMBIC FORM)
Descriptor:Flagellar biosynthesis protein FlhA, (4R)-2-METHYLPENTANE-2,4-DIOL, CALCIUM ION
Authors:Ogawa, Y., Kinoshita, M., Minamino, T., Imada, K.
Deposit date:2018-08-21
Release date:2019-03-20
Last modified:2019-06-19
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structural Insights into the Substrate Specificity Switch Mechanism of the Type III Protein Export Apparatus.
Structure, 27, 2019
6AI1
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STRUCTURE OF THE 328-692 FRAGMENT OF FLHA (D456V)
Descriptor:Flagellar biosynthesis protein FlhA
Authors:Ogawa, Y., Kinoshita, M., Minamino, T., Imada, K.
Deposit date:2018-08-21
Release date:2019-03-20
Last modified:2019-06-19
Method:X-RAY DIFFRACTION (3.5 Å)
Cite:Structural Insights into the Substrate Specificity Switch Mechanism of the Type III Protein Export Apparatus.
Structure, 27, 2019
6AI2
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STRUCTURE OF THE 328-692 FRAGMENT OF FLHA (F459A)
Descriptor:Flagellar biosynthesis protein FlhA
Authors:Ogawa, Y., Kinoshita, M., Minamino, T., Imada, K.
Deposit date:2018-08-21
Release date:2019-03-20
Last modified:2019-06-19
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:Structural Insights into the Substrate Specificity Switch Mechanism of the Type III Protein Export Apparatus.
Structure, 27, 2019
6AI3
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STRUCTURE OF THE 328-692 FRAGMENT OF FLHA (T490M)
Descriptor:Flagellar biosynthesis protein FlhA
Authors:Ogawa, Y., Kinoshita, M., Minamino, T., Imada, K.
Deposit date:2018-08-21
Release date:2019-03-20
Last modified:2019-06-19
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:Structural Insights into the Substrate Specificity Switch Mechanism of the Type III Protein Export Apparatus.
Structure, 27, 2019
3A7M
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STRUCTURE OF FLIT, THE FLAGELLAR TYPE III CHAPERONE FOR FLID
Descriptor:Flagellar protein fliT
Authors:Imada, K., Minamino, T., Kinoshita, M., Namba, K.
Deposit date:2009-09-29
Release date:2010-04-28
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Structural insight into the regulatory mechanisms of interactions of the flagellar type III chaperone FliT with its binding partners.
Proc.Natl.Acad.Sci.USA, 107, 2010
3ADY
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CRYSTAL STRUCTURE OF DOTD FROM LEGIONELLA
Descriptor:DotD
Authors:Imada, K., Nakano, N., Kubori, T., Kinoshita, M., Nagai, H.
Deposit date:2010-01-29
Release date:2010-11-03
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of Legionella DotD: insights into the relationship between type IVB and type II/III secretion systems
Plos Pathog., 6, 2010
3AJC
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STRUCTURE OF THE MC DOMAIN OF FLIG (PEV), A CW-BIASED MUTANT
Descriptor:Flagellar motor switch protein fliG
Authors:Imada, K., Minamino, T., Kinoshita, M., Namba, K.
Deposit date:2010-05-27
Release date:2011-05-11
Last modified:2014-01-22
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structural insight into the rotational switching mechanism of the bacterial flagellar motor
Plos Biol., 9, 2011
5B0O
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STRUCTURE OF THE FLIH-FLII COMPLEX
Descriptor:Flagellum-specific ATP synthase, Flagellar assembly protein FliH, ADENOSINE-5'-DIPHOSPHATE
Authors:Imada, K., Uchida, Y., Kinoshita, M., Namba, K., Minamino, T.
Deposit date:2015-11-02
Release date:2016-03-23
Last modified:2018-04-18
Method:X-RAY DIFFRACTION (3 Å)
Cite:Insight into the flagella type III export revealed by the complex structure of the type III ATPase and its regulator
Proc.Natl.Acad.Sci.USA, 113, 2016
2RVB
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SOLUTION STRUCTURE OF THE COMPLEX BETWEEN XPC ACIDIC DOMAIN AND TFIIH P62 PH DOMAIN
Descriptor:DNA repair protein complementing XP-C cells, General transcription factor IIH subunit 1
Authors:Okuda, M., Nishimura, Y.
Deposit date:2015-07-01
Release date:2015-09-09
Last modified:2017-06-07
Method:SOLUTION NMR
Cite:Structural Insight into the Mechanism of TFIIH Recognition by the Acidic String of the Nucleotide Excision Repair Factor XPC.
Structure, 23, 2015
5YFI
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CRYSTAL STRUCTURE OF THE ANTI-HUMAN PROSTAGLANDIN E RECEPTOR EP4 ANTIBODY FAB FRAGMENT
Descriptor:Light chain of Fab fragment, Heavy chain of Fab fragment, ZINC ION
Authors:Toyoda, Y., Morimoto, K., Suno, R., Horita, S., Iwata, S., Kobayashi, T.
Deposit date:2017-09-21
Release date:2018-12-05
Last modified:2019-03-06
Method:X-RAY DIFFRACTION (1.848 Å)
Cite:Ligand binding to human prostaglandin E receptor EP4at the lipid-bilayer interface.
Nat. Chem. Biol., 15, 2019
5YHL
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CRYSTAL STRUCTURE OF THE HUMAN PROSTAGLANDIN E RECEPTOR EP4 IN COMPLEX WITH FAB AND AN ANTAGONIST BR-DERIVATIVE
Descriptor:Prostaglandin E2 receptor EP4 subtype, Heavy chain of Fab fragment, Light chain of Fab fragment, ...
Authors:Toyoda, Y., Morimoto, K., Suno, R., Horita, S., Iwata, S., Kobayashi, T.
Deposit date:2017-09-28
Release date:2018-12-05
Last modified:2019-01-30
Method:X-RAY DIFFRACTION (4.2 Å)
Cite:Ligand binding to human prostaglandin E receptor EP4at the lipid-bilayer interface.
Nat. Chem. Biol., 15, 2019
5YWY
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CRYSTAL STRUCTURE OF THE HUMAN PROSTAGLANDIN E RECEPTOR EP4 IN COMPLEX WITH FAB AND ONO-AE3-208
Descriptor:Prostaglandin E2 receptor EP4 subtype,Prostaglandin E2 receptor EP4 subtype, Heavy chain of Fab fragment, Light chain of Fab fragment, ...
Authors:Toyoda, Y., Morimoto, K., Suno, R., Horita, S., Iwata, S., Kobayashi, T.
Deposit date:2017-11-30
Release date:2018-12-05
Last modified:2018-12-19
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Ligand binding to human prostaglandin E receptor EP4at the lipid-bilayer interface.
Nat. Chem. Biol., 15, 2019
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