Author results

1AJF
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SOLUTION STRUCTURE OF THE P5B STEM LOOP FROM A GROUP I INTRON COMPLEXED WITH COBALT (III) HEXAMMINE, NMR, MINIMIZED AVERAGE STRUCTURE
Descriptor:RNA (5'-R(*GP*AP*CP*AP*GP*GP*GP*GP*AP*AP*AP*CP*UP*UP*UP*GP*UP*C)-3'), COBALT HEXAMMINE(III)
Authors:Kieft, J.S., Tinoco Junior, I.
Deposit date:1997-05-02
Release date:1997-07-07
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution structure of a metal-binding site in the major groove of RNA complexed with cobalt (III) hexammine.
Structure, 5, 1997
1KH6
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CRYSTAL STRUCTURE OF AN RNA TERTIARY DOMAIN ESSENTIAL TO HCV IRES-MEDIATED TRANSLATION INITIATION.
Descriptor:JIIIabc
Authors:Kieft, J.S., Zhou, K., Grech, A., Jubin, R., Doudna, J.A.
Deposit date:2001-11-29
Release date:2002-04-26
Last modified:2017-02-08
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Crystal structure of an RNA tertiary domain essential to HCV IRES-mediated translation initiation.
Nat.Struct.Biol., 9, 2002
3MJ3
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CRICKET PARALYSIS VIRUS IGR IRES DOMAIN 3 RNA BOUND TO SELENATE
Descriptor:Domain 3 of the cricket paralysis virus intergenic region IRES RNA, RNA (5'-R(P*UP*AP*AP*GP*AP*AP*AP*UP*UP*UP*AP*CP*CP*U)-3'), SELENATE ION
Authors:Kieft, J.S., Chase, E., Costantino, D.A., Golden, B.L.
Deposit date:2010-04-12
Release date:2010-05-19
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Identification and characterization of anion binding sites in RNA.
Rna, 16, 2010
3MJA
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CRICKET PARALYSIS VIRUS IGR IRES DOMAIN 3 RNA BOUND TO SELENATE, STRUCTURE #2
Descriptor:Domain 3 of the cricket paralysis virus intergenic region IRES RNA, RNA (5'-R(P*UP*AP*AP*GP*AP*AP*AP*UP*UP*UP*AP*CP*CP*U)-3'), SELENATE ION
Authors:Kieft, J.S., Golden, B.L., Costantino, D.A., Chase, E.
Deposit date:2010-04-12
Release date:2010-05-19
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Identification and characterization of anion binding sites in RNA.
Rna, 16, 2010
3MJB
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CRICKET PARALYSIS VIRUS IGR IRES DOMAIN 3 RNA BOUND TO SULFATE
Descriptor:Domain 3 of the cricket paralysis virus intergenic region IRES RNA, RNA (5'-R(P*UP*AP*AP*GP*AP*AP*AP*UP*UP*UP*AP*CP*CP*U)-3'), SULFATE ION
Authors:Kieft, J.S., Golden, B.L., Costantino, D.A., Chase, E.
Deposit date:2010-04-12
Release date:2010-05-19
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Identification and characterization of anion binding sites in RNA.
Rna, 16, 2010
3B31
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CRYSTAL STRUCTURE OF DOMAIN III OF THE CRICKET PARALYSIS VIRUS IRES RNA
Descriptor:RNA (29-MER), RNA (5'-R(P*UP*AP*AP*GP*AP*AP*AP*UP*UP*UP*AP*CP*CP*U)-3'), IRIDIUM HEXAMMINE ION, ...
Authors:Kieft, J.S., Costantino, D.A., Pfingsten, J.S., Rambo, R.P.
Deposit date:2007-10-19
Release date:2007-12-25
Last modified:2017-10-25
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:tRNA-mRNA mimicry drives translation initiation from a viral IRES.
Nat.Struct.Mol.Biol., 15, 2008
4P5J
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CRYSTAL STRUCTURE OF THE TRNA-LIKE STRUCTURE FROM TURNIP YELLOW MOSAIC VIRUS (TYMV), A TRNA MIMICKING RNA
Descriptor:Turnip yellow mosaic virus mRNA for the coat protein, MAGNESIUM ION, IRIDIUM HEXAMMINE ION, ...
Authors:Colussi, T.M., Costantino, D.A., Hammond, J.A., Ruehle, G.M., Nix, J.C., Kieft, J.S.
Deposit date:2014-03-17
Release date:2014-06-04
Last modified:2017-09-06
Method:X-RAY DIFFRACTION (1.9912 Å)
Cite:The structural basis of transfer RNA mimicry and conformational plasticity by a viral RNA.
Nature, 511, 2014
2IL9
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CRYSTAL STRUCTURE OF PLAUTIA STALI INTESTINE VIRUS INTERGENIC REGION INTERNAL RIBOSOME ENTRY SITE RIBOSOMAL BINDING DOMAIN RNA AT 3.1 ANGSTROMS
Descriptor:Ribosomal Binding Domain of the IRES RNA
Authors:Pfingsten, J.S., Costantino, D.A., Kieft, J.S.
Deposit date:2006-10-02
Release date:2007-02-13
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Structural basis for ribosome recruitment and manipulation by a viral IRES RNA
Science, 314, 2006
3QQN
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THE RETINAL SPECIFIC CD147 IG0 DOMAIN: FROM MOLECULAR STRUCTURE TO BIOLOGICAL ACTIVITY
Descriptor:Basigin
Authors:Redzic, J.S., Armstrong, G.S., Isern, N.G., Kieft, J.S., Eisenmesser, E.Z., Berkeley Structural Genomics Center (BSGC)
Deposit date:2011-02-15
Release date:2011-05-11
Last modified:2011-08-17
Method:X-RAY DIFFRACTION (2.309 Å)
Cite:The Retinal Specific CD147 Ig0 Domain: From Molecular Structure to Biological Activity.
J.Mol.Biol., 411, 2011
3QR2
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WILD TYPE CD147 IG0 DOMAIN
Descriptor:Basigin
Authors:Redzic, J.S., Armstrong, G.S., Isern, N.G., Kieft, J.S., Eisenmesser, E.Z., Berkeley Structural Genomics Center (BSGC)
Deposit date:2011-02-16
Release date:2011-05-11
Last modified:2011-08-17
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:The Retinal Specific CD147 Ig0 Domain: From Molecular Structure to Biological Activity.
J.Mol.Biol., 411, 2011
2PXB
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VARIANT 2 OF RIBONUCLEOPROTEIN CORE OF THE E. COLI SIGNAL RECOGNITION PARTICLE
Descriptor:4.5 S RNA, Signal recognition particle protein, COBALT HEXAMMINE(III)
Authors:Keel, A.Y., Rambo, R.P., Batey, R.T., Kieft, J.S.
Deposit date:2007-05-14
Release date:2007-08-07
Last modified:2017-05-10
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:A General Strategy to Solve the Phase Problem in RNA Crystallography.
Structure, 15, 2007
2PXD
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VARIANT 1 OF RIBONUCLEOPROTEIN CORE OF THE E. COLI SIGNAL RECOGNITION PARTICLE
Descriptor:4.5 S RNA, Signal recognition particle protein, COBALT HEXAMMINE(III)
Authors:Keel, A.Y., Rambo, R.P., Batey, R.T., Kieft, J.S.
Deposit date:2007-05-14
Release date:2007-08-07
Last modified:2013-08-28
Method:X-RAY DIFFRACTION (2 Å)
Cite:A General Strategy to Solve the Phase Problem in RNA Crystallography.
Structure, 15, 2007
2PXE
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VARIANT 4 OF RIBONUCLEOPROTEIN CORE OF THE E. COLI SIGNAL RECOGNITION PARTICLE
Descriptor:4.5 S RNA, Signal recognition particle protein, COBALT HEXAMMINE(III)
Authors:Keel, A.Y., Rambo, R.P., Batey, R.T., Kieft, J.S.
Deposit date:2007-05-14
Release date:2007-08-07
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:A General Strategy to Solve the Phase Problem in RNA Crystallography.
Structure, 15, 2007
2PXF
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VARIANT 5 OF RIBONUCLEOPROTEIN CORE OF THE E. COLI SIGNAL RECOGNITION PARTICLE
Descriptor:4.5 S RNA, Signal recognition particle protein, COBALT HEXAMMINE(III)
Authors:Keel, A.Y., Rambo, R.P., Batey, R.T., Kieft, J.S.
Deposit date:2007-05-14
Release date:2007-08-07
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:A General Strategy to Solve the Phase Problem in RNA Crystallography.
Structure, 15, 2007
2PXK
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VARIANT 8 OF RIBONUCLEOPROTEIN CORE OF THE E. COLI SIGNAL RECOGNITION PARTICLE
Descriptor:4.5 S RNA, Signal recognition particle protein, COBALT HEXAMMINE(III)
Authors:Keel, A.Y., Rambo, R.P., Batey, R.T., Kieft, J.S.
Deposit date:2007-05-14
Release date:2007-08-07
Last modified:2018-03-07
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:A General Strategy to Solve the Phase Problem in RNA Crystallography.
Structure, 15, 2007
2PXL
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VARIANT 9 OF RIBONUCLEOPROTEIN CORE OF THE E. COLI SIGNAL RECOGNITION PARTICLE
Descriptor:4.5 S RNA, Signal recognition particle protein, COBALT HEXAMMINE(III)
Authors:Keel, A.Y., Rambo, R.P., Batey, R.T., Kieft, J.S.
Deposit date:2007-05-14
Release date:2007-08-07
Last modified:2018-03-07
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:A General Strategy to Solve the Phase Problem in RNA Crystallography.
Structure, 15, 2007
2PXP
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VARIANT 13 OF RIBONUCLEOPROTEIN CORE OF THE E. COLI SIGNAL RECOGNITION PARTICLE
Descriptor:4.5 S RNA, Signal recognition particle protein, COBALT HEXAMMINE(III)
Authors:Keel, A.Y., Rambo, R.P., Batey, R.T., Kieft, J.S.
Deposit date:2007-05-14
Release date:2007-08-07
Last modified:2018-03-07
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:A General Strategy to Solve the Phase Problem in RNA Crystallography.
Structure, 15, 2007
2PXQ
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VARIANT 14 OF RIBONUCLEOPROTEIN CORE OF THE E. COLI SIGNAL RECOGNITION PARTICLE
Descriptor:Signal recognition particle protein, 4.5 S RNA, COBALT HEXAMMINE(III)
Authors:Keel, A.Y., Rambo, R.P., Batey, R.T., Kieft, J.S.
Deposit date:2007-05-14
Release date:2007-08-07
Last modified:2012-06-20
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:A General Strategy to Solve the Phase Problem in RNA Crystallography.
Structure, 15, 2007
2PXT
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VARIANT 15 OF RIBONUCLEOPROTEIN CORE OF THE E. COLI SIGNAL RECOGNITION PARTICLE
Descriptor:4.5 S RNA, Signal recognition particle protein, COBALT HEXAMMINE(III)
Authors:Keel, A.Y., Rambo, R.P., Batey, R.T., Kieft, J.S.
Deposit date:2007-05-14
Release date:2007-08-07
Last modified:2018-03-07
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:A General Strategy to Solve the Phase Problem in RNA Crystallography.
Structure, 15, 2007
2PXU
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VARIANT 16 OF RIBONUCLEOPROTEIN CORE OF THE E. COLI SIGNAL RECOGNITION PARTICLE
Descriptor:4.5 S RNA, Signal recognition particle protein, COBALT HEXAMMINE(III)
Authors:Keel, A.Y., Rambo, R.P., Batey, R.T., Kieft, J.S.
Deposit date:2007-05-14
Release date:2007-08-07
Last modified:2018-03-07
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:A General Strategy to Solve the Phase Problem in RNA Crystallography.
Structure, 15, 2007
2PXV
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VARIANT 6 OF RIBONUCLEOPROTEIN CORE OF THE E. COLI SIGNAL RECOGNITION PARTICLE
Descriptor:4.5 S RNA, Signal recognition particle protein, COBALT HEXAMMINE(III)
Authors:Keel, A.Y., Rambo, R.P., Batey, R.T., Kieft, J.S.
Deposit date:2007-05-14
Release date:2007-08-07
Last modified:2018-03-07
Method:X-RAY DIFFRACTION (2 Å)
Cite:A General Strategy to Solve the Phase Problem in RNA Crystallography.
Structure, 15, 2007
4P5K
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STRUCTURAL BASIS OF CHRONIC BERYLLIUM DISEASE: BRIDGING THE GAP BETWEEN ALLERGY AND AUTOIMMUNITY
Descriptor:HLA class II histocompatibility antigen, DP alpha 1 chain, RAS peptide,HLA class II histocompatibility antigen, ...
Authors:Clayton, G.M., Wang, Y., Crawford, F., Novikov, A., Wimberly, B.T., Kieft, J.S., Falta, M.T., Bowerman, N.A., Marrack, P., Fontenot, A.P., Dai, S., Kappler, J.W.
Deposit date:2014-03-17
Release date:2015-01-21
Last modified:2018-03-21
Method:X-RAY DIFFRACTION (2.59 Å)
Cite:Structural basis of chronic beryllium disease: linking allergic hypersensitivity and autoimmunity.
Cell, 158, 2014
4PQV
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CRYSTAL STRUCTURE OF AN XRN1-RESISTANT RNA FROM THE 3' UNTRANSLATED REGION OF A FLAVIVIRUS (MURRAY VALLEY ENCEPHALITIS VIRUS)
Descriptor:XRN1-resistant flaviviral RNA, MAGNESIUM ION
Authors:Chapman, E.G., Costantino, D.A., Rabe, J.L., Moon, S.L., Wilusz, J., Nix, J.C., Kieft, J.S.
Deposit date:2014-03-04
Release date:2014-04-30
Last modified:2017-11-22
Method:X-RAY DIFFRACTION (2.463 Å)
Cite:The structural basis of pathogenic subgenomic flavivirus RNA (sfRNA) production.
Science, 344, 2014
4V83
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CRYSTAL STRUCTURE OF A COMPLEX CONTAINING DOMAIN 3 FROM THE PSIV IGR IRES RNA BOUND TO THE 70S RIBOSOME.
Descriptor:ribosomal RNA 16S, 30S ribosomal protein S2, 30S ribosomal protein S3, ...
Authors:Zhu, J., Korostelev, A., Costantino, D., Noller, H.F., Kieft, J.S.
Deposit date:2010-12-13
Release date:2014-07-09
Last modified:2014-12-10
Method:X-RAY DIFFRACTION (3.5 Å)
Cite:Crystal structures of complexes containing domains from two viral internal ribosome entry site (IRES) RNAs bound to the 70S ribosome.
Proc.Natl.Acad.Sci.USA, 108, 2011
4V84
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CRYSTAL STRUCTURE OF A COMPLEX CONTAINING DOMAIN 3 OF CRPV IGR IRES RNA BOUND TO THE 70S RIBOSOME.
Descriptor:ribosomal RNA 16S, 30S ribosomal protein S2, 30S ribosomal protein S3, ...
Authors:Zhu, J., Korostelev, A., Costantino, D., Noller, H.F., Kieft, J.S.
Deposit date:2010-12-13
Release date:2014-07-09
Last modified:2018-04-11
Method:X-RAY DIFFRACTION (3.4 Å)
Cite:Crystal structures of complexes containing domains from two viral internal ribosome entry site (IRES) RNAs bound to the 70S ribosome.
Proc.Natl.Acad.Sci.USA, 108, 2011
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