Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
5H5A
DownloadVisualize
BU of 5h5a by Molmil
Mdm12 from K. lactis (1-239), Lys residues are uniformly dimethyl modified
Descriptor: Mitochondrial distribution and morphology protein 12, POTASSIUM ION, [(2~{R})-1-[2-azanylethoxy(oxidanyl)phosphoryl]oxy-3-hexadecanoyloxy-propan-2-yl] (~{Z})-octadec-9-enoate
Authors:Kawano, S, Quinbara, S, Endo, T.
Deposit date:2016-11-04
Release date:2017-11-08
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.26 Å)
Cite:Structure-function insights into direct lipid transfer between membranes by Mmm1-Mdm12 of ERMES
J. Cell Biol., 217, 2018
5H54
DownloadVisualize
BU of 5h54 by Molmil
Mdm12 from K. lactis 1-239
Descriptor: Mitochondrial distribution and morphology protein 12
Authors:Kawano, S, Quinbara, S, Endo, T.
Deposit date:2016-11-04
Release date:2017-11-08
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Structure-function insights into direct lipid transfer between membranes by Mmm1-Mdm12 of ERMES
J. Cell Biol., 217, 2018
5H55
DownloadVisualize
BU of 5h55 by Molmil
Mdm12 from K. lactis
Descriptor: Mitochondrial distribution and morphology protein 12
Authors:Kawano, S, Quinbara, S.
Deposit date:2016-11-04
Release date:2017-11-08
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (3.5 Å)
Cite:Structure-function insights into direct lipid transfer between membranes by Mmm1-Mdm12 of ERMES
J. Cell Biol., 217, 2018
5H5C
DownloadVisualize
BU of 5h5c by Molmil
Mdm12 from K. lactis (1-239), uniformly Lys dimethyl modified, crystallized in FOS-MEA-10
Descriptor: Mitochondrial distribution and morphology protein 12
Authors:Kawano, S, Quinbara, S, Endo, T.
Deposit date:2016-11-05
Release date:2017-11-08
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (3.31 Å)
Cite:Structure-function insights into direct lipid transfer between membranes by Mmm1-Mdm12 of ERMES
J. Cell Biol., 217, 2018
3A3C
DownloadVisualize
BU of 3a3c by Molmil
Crystal structure of TIM40/MIA40 fusing MBP, C296S and C298S mutant
Descriptor: Maltose-binding periplasmic protein, LINKER, Mitochondrial intermembrane space import and assembly protein 40, ...
Authors:Kawano, S, Naoe, M, Momose, T, Watanabe, N, Endo, T.
Deposit date:2009-06-11
Release date:2009-08-04
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structural basis of yeast Tim40/Mia40 as an oxidative translocator in the mitochondrial intermembrane space.
Proc.Natl.Acad.Sci.USA, 106, 2009
2ZXT
DownloadVisualize
BU of 2zxt by Molmil
Crystal structure of Tim40/MIA40, a disulfide relay system in mitochondria, solved as MBP fusion protein
Descriptor: Maltose-binding periplasmic protein, LINKER, Mitochondrial intermembrane space import and assembly protein 40, ...
Authors:Kawano, S, Momose, T, Watanabe, N, Endo, T.
Deposit date:2009-01-07
Release date:2009-08-04
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (3 Å)
Cite:Structural basis of yeast Tim40/Mia40 as an oxidative translocator in the mitochondrial intermembrane space.
Proc.Natl.Acad.Sci.USA, 106, 2009
1IYB
DownloadVisualize
BU of 1iyb by Molmil
Crystal Structure of the Nicotiana glutinosa Ribonuclease NW
Descriptor: GUANOSINE-5'-MONOPHOSPHATE, Ribonuclease
Authors:Kawano, S, Kakuta, Y, Kimura, M.
Deposit date:2002-08-05
Release date:2003-08-05
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Guanine binding site of the Nicotiana glutinosa ribonuclease NW revealed by X-ray crystallography
Biochemistry, 41, 2002
3W4Y
DownloadVisualize
BU of 3w4y by Molmil
Crystal structure of yeast Erv1 core
Descriptor: FLAVIN-ADENINE DINUCLEOTIDE, Mitochondrial FAD-linked sulfhydryl oxidase ERV1
Authors:Kawano, S, Terao, K, Watanabe, N, Endo, T.
Deposit date:2013-01-17
Release date:2013-03-20
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of yeast Erv1 core
To be published
1VD1
DownloadVisualize
BU of 1vd1 by Molmil
Crystal structure of RNase NT in complex with 5'-AMP
Descriptor: ADENOSINE MONOPHOSPHATE, RNase NGR3
Authors:Kawano, S, Kakuta, Y, Kimura, M.
Deposit date:2004-03-17
Release date:2005-04-26
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal Structure of the Nicotiana glutinosa Ribonuclease NT in Complex with Nucleotide Monophosphates
to be published
1VD3
DownloadVisualize
BU of 1vd3 by Molmil
Ribonuclease NT in complex with 2'-UMP
Descriptor: PHOSPHORIC ACID MONO-[2-(2,4-DIOXO-3,4-DIHYDRO-2H-PYRIMIDIN-1-YL)-4-HYDROXY-5-HYDROXYMETHYL-TETRAHYDRO-FURAN-3-YL] ESTER, RNase NGR3
Authors:Kawano, S, Kakuta, Y, Kimura, M.
Deposit date:2004-03-18
Release date:2005-04-26
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal Structure of the Nicotiana glutinosa Ribonuclease NT in Complex with Nucleotide Monophosphates
to be published
1VCZ
DownloadVisualize
BU of 1vcz by Molmil
Crystal structure of the RNase NT in complex with 5'-GMP
Descriptor: GUANOSINE-5'-MONOPHOSPHATE, RNase NGR3
Authors:Kawano, S, Kakuta, Y, Kimura, M.
Deposit date:2004-03-17
Release date:2005-04-26
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal Structure of the Nicotiana glutinosa Ribonuclease NT in Complex with Nucleotide Monophosphates
to be published
2CZV
DownloadVisualize
BU of 2czv by Molmil
Crystal structure of archeal RNase P protein ph1481p in complex with ph1877p
Descriptor: ACETIC ACID, Ribonuclease P protein component 2, Ribonuclease P protein component 3, ...
Authors:Kawano, S, Kakuta, Y, Nakashima, T, Tanaka, I, Kimura, M.
Deposit date:2005-07-19
Release date:2006-06-27
Last modified:2021-11-10
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of protein Ph1481p in complex with protein Ph1877p of archaeal RNase P from Pyrococcus horikoshii OT3: implication of dimer formation of the holoenzyme
J.Mol.Biol., 357, 2006
4YTV
DownloadVisualize
BU of 4ytv by Molmil
Crystal structure of Mdm35
Descriptor: COBALT (II) ION, GLYCEROL, Mitochondrial distribution and morphology protein 35
Authors:Watanabe, Y, Tamura, Y, Kawano, S, Endo, T.
Deposit date:2015-03-18
Release date:2015-08-12
Last modified:2020-02-05
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Structural and mechanistic insights into phospholipid transfer by Ups1-Mdm35 in mitochondria.
Nat Commun, 6, 2015
4YTX
DownloadVisualize
BU of 4ytx by Molmil
Crystal structure of Ups1-Mdm35 complex with PA
Descriptor: 1,2-DILAUROYL-SN-GLYCERO-3-PHOSPHATE, Mitochondrial distribution and morphology protein 35, Protein UPS1, ...
Authors:Watanabe, Y, Tamura, Y, Kawano, S, Endo, T.
Deposit date:2015-03-18
Release date:2015-08-12
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Structural and mechanistic insights into phospholipid transfer by Ups1-Mdm35 in mitochondria.
Nat Commun, 6, 2015
4YTW
DownloadVisualize
BU of 4ytw by Molmil
Crystal structure of Ups1-Mdm35 complex
Descriptor: Mitochondrial distribution and morphology protein 35, Protein UPS1, mitochondrial
Authors:Watanabe, Y, Tamura, Y, Kawano, S, Endo, T.
Deposit date:2015-03-18
Release date:2015-08-12
Last modified:2020-02-05
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Structural and mechanistic insights into phospholipid transfer by Ups1-Mdm35 in mitochondria.
Nat Commun, 6, 2015
2RQ8
DownloadVisualize
BU of 2rq8 by Molmil
Solution NMR structure of titin I27 domain mutant
Descriptor: Titin
Authors:Yagawa, K, Oguro, T, Momose, T, Kawano, S, Sato, T, Endo, T.
Deposit date:2009-03-05
Release date:2010-02-02
Last modified:2021-11-10
Method:SOLUTION NMR
Cite:Structural basis for unfolding pathway-dependent stability of proteins: Vectorial unfolding vs. global unfolding
Protein Sci., 2010
3AAV
DownloadVisualize
BU of 3aav by Molmil
Bovine beta-trypsin bound to meta-diamidino schiff base copper (II) chelate
Descriptor: 3,3'-[ethane-1,2-diylbis(nitrilomethylylidene)]bis(4-hydroxybenzenecarboximidamide), CALCIUM ION, COPPER (II) ION, ...
Authors:Iyaguchi, D, Kawano, S, Toyota, E.
Deposit date:2009-11-26
Release date:2010-04-07
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structural basis for the design of novel Schiff base metal chelate inhibitors of trypsin
Bioorg.Med.Chem., 18, 2010
3AAS
DownloadVisualize
BU of 3aas by Molmil
Bovine beta-trypsin bound to meta-guanidino schiff base copper (II) chelate
Descriptor: (E)-N-[(5-carbamimidamido-2-hydroxyphenyl)methylidene]-L-alanine, CALCIUM ION, COPPER (II) ION, ...
Authors:Iyaguchi, D, Kawano, S, Toyota, E.
Deposit date:2009-11-26
Release date:2010-04-07
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Structural basis for the design of novel Schiff base metal chelate inhibitors of trypsin
Bioorg.Med.Chem., 18, 2010
3AAU
DownloadVisualize
BU of 3aau by Molmil
Bovine beta-trypsin bound to meta-diguanidino schiff base copper (II) chelate
Descriptor: CALCIUM ION, COPPER (II) ION, Cationic trypsin, ...
Authors:Iyaguchi, D, Kawano, S, Toyota, E.
Deposit date:2009-11-26
Release date:2010-04-07
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural basis for the design of novel Schiff base metal chelate inhibitors of trypsin
Bioorg.Med.Chem., 18, 2010
6JNF
DownloadVisualize
BU of 6jnf by Molmil
Cryo-EM structure of the translocator of the outer mitochondrial membrane
Descriptor: (2R)-3-{[(S)-(2-aminoethoxy)(hydroxy)phosphoryl]oxy}-2-(tetradecanoyloxy)propyl tetradecanoate, Mitochondrial import receptor subunit TOM22, Mitochondrial import receptor subunit TOM40, ...
Authors:Araiso, Y, Tsutsumi, A, Suzuki, J, Yunoki, K, Kawano, S, Kikkawa, M, Endo, T.
Deposit date:2019-03-14
Release date:2019-10-16
Last modified:2024-03-27
Method:ELECTRON MICROSCOPY (3.81 Å)
Cite:Structure of the mitochondrial import gate reveals distinct preprotein paths.
Nature, 575, 2019
1WZZ
DownloadVisualize
BU of 1wzz by Molmil
Structure of endo-beta-1,4-glucanase CMCax from Acetobacter xylinum
Descriptor: Probable endoglucanase, SULFATE ION
Authors:Yasutake, Y, Kawano, S, Tajima, K, Yao, M, Satoh, Y, Munekata, M, Tanaka, I, Structural Genomics Consortium (SGC)
Deposit date:2005-03-10
Release date:2006-03-14
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Structural characterization of the Acetobacter xylinum endo-beta-1,4-glucanase CMCax required for cellulose biosynthesis.
Proteins, 64, 2006
7P6T
DownloadVisualize
BU of 7p6t by Molmil
Crystal structure of the FimH-binding decoy module of human glycoprotein 2 (GP2) (crystal form III)
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-ethyl-2-(hydroxymethyl)propane-1,3-diol, Isoform Alpha of Pancreatic secretory granule membrane major glycoprotein GP2
Authors:Stsiapanava, A, Tunyasuvunakool, K, Jumper, J, de Sanctis, D, Jovine, L.
Deposit date:2021-07-17
Release date:2022-03-16
Last modified:2022-03-30
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Structure of the decoy module of human glycoprotein 2 and uromodulin and its interaction with bacterial adhesin FimH.
Nat.Struct.Mol.Biol., 29, 2022
7P6R
DownloadVisualize
BU of 7p6r by Molmil
Crystal structure of the FimH-binding decoy module of human glycoprotein 2 (GP2) (crystal form I)
Descriptor: 1,2-ETHANEDIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose, Isoform Alpha of Pancreatic secretory granule membrane major glycoprotein GP2
Authors:Stsiapanava, A, Tunyasuvunakool, K, Jumper, J, de Sanctis, D, Jovine, L.
Deposit date:2021-07-17
Release date:2022-03-16
Last modified:2022-03-30
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structure of the decoy module of human glycoprotein 2 and uromodulin and its interaction with bacterial adhesin FimH.
Nat.Struct.Mol.Biol., 29, 2022
7P6S
DownloadVisualize
BU of 7p6s by Molmil
Crystal structure of the FimH-binding decoy module of human glycoprotein 2 (GP2) (crystal form II)
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Isoform Alpha of Pancreatic secretory granule membrane major glycoprotein GP2, pentane-1,5-diol
Authors:Stsiapanava, A, Tunyasuvunakool, K, Jumper, J, de Sanctis, D, Jovine, L.
Deposit date:2021-07-17
Release date:2022-03-16
Last modified:2022-03-30
Method:X-RAY DIFFRACTION (1.35 Å)
Cite:Structure of the decoy module of human glycoprotein 2 and uromodulin and its interaction with bacterial adhesin FimH.
Nat.Struct.Mol.Biol., 29, 2022
3A8E
DownloadVisualize
BU of 3a8e by Molmil
The structure of AxCesD octamer complexed with cellopentaose
Descriptor: Cellulose synthase operon protein D, beta-D-glucopyranose-(1-4)-beta-D-glucopyranose-(1-4)-beta-D-glucopyranose-(1-4)-beta-D-glucopyranose-(1-4)-beta-D-glucopyranose
Authors:Hu, S.Q, Tajima, K, Zhou, Y, Yao, M, Tanaka, I.
Deposit date:2009-10-05
Release date:2010-09-22
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (3 Å)
Cite:Structure of bacterial cellulose synthase subunit D octamer with four inner passageways
Proc.Natl.Acad.Sci.USA, 107, 2010

 

12>

217705

PDB entries from 2024-03-27

PDB statisticsPDBj update infoContact PDBjnumon