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2F7L
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BU of 2f7l by Molmil
Crystal structure of Sulfolobus tokodaii phosphomannomutase/phosphoglucomutase
Descriptor: 455aa long hypothetical phospho-sugar mutase, SULFATE ION
Authors:Kawamura, T, Sakai, N, Akutsu, J, Zhang, Z, Watanabe, N, Kawarabayashi, Y, Tanaka, I.
Deposit date:2005-12-01
Release date:2006-12-05
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Crystal structure of Sulfolobus tokodaii phosphomannomutase/phosphoglucomutase
To be Published
2HTJ
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BU of 2htj by Molmil
NMR structure of E.coli PapI
Descriptor: P fimbrial regulatory protein KS71A
Authors:Kawamura, T, Zhou, H, Le, L.U.K, Dahlquist, F.W.
Deposit date:2006-07-25
Release date:2007-01-30
Last modified:2022-03-09
Method:SOLUTION NMR
Cite:Solution Structure of Escherichia coli PapI, a Key Regulator of the Pap Pili Phase Variation.
J.Mol.Biol., 365, 2007
2L4A
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BU of 2l4a by Molmil
NMR structure of the DNA-binding domain of E.coli Lrp
Descriptor: Leucine responsive regulatory protein
Authors:Kawamura, T, Zhou, H, Dahlquist, F.W.
Deposit date:2010-10-01
Release date:2011-03-09
Last modified:2011-08-24
Method:SOLUTION NMR
Cite:The design involved in PapI and Lrp regulation of the pap operon.
J.Mol.Biol., 409, 2011
1WQA
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BU of 1wqa by Molmil
Crystal Structure of Pyrococcus horikoshii phosphomannomutase/phosphoglucomutase complexed with Mg2+
Descriptor: MAGNESIUM ION, phospho-sugar mutase
Authors:Kawamura, T, Tsuge, M, Watanabe, N, Tanaka, I.
Deposit date:2004-09-24
Release date:2005-10-04
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of Pyrococcus horikoshii phosphomannomutase/phosphoglucomutase
To be Published
1WZC
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BU of 1wzc by Molmil
Crystal structure of Pyrococcus horikoshii mannosyl-3-phosphoglycerate phosphatase complexed with MG2+ and phosphate
Descriptor: MAGNESIUM ION, Mannosyl-3-phosphoglycerate phosphatase, PHOSPHATE ION
Authors:Kawamura, T, Watanabe, N, Tanaka, I.
Deposit date:2005-03-04
Release date:2006-02-28
Last modified:2021-11-10
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structure of mannosyl-3-phosphoglycerate phosphatase from Pyrococcus horikoshii.
Acta Crystallogr.,Sect.D, 64, 2008
2ZU9
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BU of 2zu9 by Molmil
Crystal structure of mannosyl-3-phosphoglycerate synthase from Pyrococcus horikoshii
Descriptor: COBALT (II) ION, GUANOSINE-5'-DIPHOSPHATE, Mannosyl-3-phosphoglycerate synthase
Authors:Kawamura, T, Watanabe, N, Tanaka, I.
Deposit date:2008-10-14
Release date:2009-10-27
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of mannosyl-3-phosphoglycerate synthase from Pyrococcus horikoshii
To be Published
2ZU8
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BU of 2zu8 by Molmil
Crystal structure of mannosyl-3-phosphoglycerate synthase from Pyrococcus horikoshii
Descriptor: GUANOSINE-5'-DIPHOSPHATE-ALPHA-D-MANNOSE, Mannosyl-3-phosphoglycerate synthase
Authors:Kawamura, T, Watanabe, N, Tanaka, I.
Deposit date:2008-10-14
Release date:2009-10-27
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Crystal structure of mannosyl-3-phosphoglycerate synthase from Pyrococcus horikoshii
To be Published
2ZOS
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BU of 2zos by Molmil
Crystal structure of mannosyl-3-phosphoglycerate phosphatase from Pyrococcus horikoshii
Descriptor: Mannosyl-3-phosphoglycerate phosphatase
Authors:Kawamura, T, Watanabe, N, Tanaka, I.
Deposit date:2008-06-05
Release date:2009-01-27
Last modified:2021-11-10
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structure of mannosyl-3-phosphoglycerate phosphatase from Pyrococcus horikoshii.
Acta Crystallogr.,Sect.D, 64, 2008
2ZU7
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BU of 2zu7 by Molmil
Crystal structure of mannosyl-3-phosphoglycerate synthase from Pyrococcus horikoshii
Descriptor: Mannosyl-3-phosphoglycerate synthase
Authors:Kawamura, T, Watanabe, N, Tanaka, I.
Deposit date:2008-10-14
Release date:2009-10-27
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal structure of mannosyl-3-phosphoglycerate synthase from Pyrococcus horikoshii
To be Published
3WVH
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BU of 3wvh by Molmil
Time-Resolved Crystal Structure of HindIII with 25sec soaking
Descriptor: DNA (5'-D(*GP*CP*CP*AP*AP*GP*CP*TP*TP*GP*GP*C)-3'), GLYCEROL, MANGANESE (II) ION, ...
Authors:Kawamura, T, Kobayashi, T, Watanabe, N.
Deposit date:2014-05-21
Release date:2015-04-08
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.54 Å)
Cite:Analysis of the HindIII-catalyzed reaction by time-resolved crystallography
Acta Crystallogr.,Sect.D, 71, 2015
3WVI
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BU of 3wvi by Molmil
Time-Resolved Crystal Structure of HindIII with 40 sec soaking
Descriptor: DNA (5'-D(*GP*CP*CP*AP*AP*GP*CP*TP*TP*GP*GP*C)-3'), GLYCEROL, MANGANESE (II) ION, ...
Authors:Kawamura, T, Kobayashi, T, Watanabe, N.
Deposit date:2014-05-21
Release date:2015-04-08
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.55 Å)
Cite:Analysis of the HindIII-catalyzed reaction by time-resolved crystallography
Acta Crystallogr.,Sect.D, 71, 2015
3WVP
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BU of 3wvp by Molmil
Time-Resolved Crystal Structure of HindIII with 60sec soaking
Descriptor: DNA (5'-D(*GP*CP*CP*A)-3'), DNA (5'-D(*GP*CP*CP*AP*AP*GP*CP*TP*TP*GP*GP*C)-3'), DNA (5'-D(P*AP*GP*CP*TP*TP*GP*GP*C)-3'), ...
Authors:Kawamura, T, Kobayashi, T, Watanabe, N.
Deposit date:2014-06-02
Release date:2015-04-08
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Analysis of the HindIII-catalyzed reaction by time-resolved crystallography
Acta Crystallogr.,Sect.D, 71, 2015
3WVG
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BU of 3wvg by Molmil
Time-Resolved Crystal Structure of HindIII with 0sec soaking
Descriptor: DNA (5'-D(*GP*CP*CP*AP*AP*GP*CP*TP*TP*GP*GP*C)-3'), GLYCEROL, SODIUM ION, ...
Authors:Kawamura, T, Kobayashi, T, Watanabe, N.
Deposit date:2014-05-21
Release date:2015-04-08
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Analysis of the HindIII-catalyzed reaction by time-resolved crystallography
Acta Crystallogr.,Sect.D, 71, 2015
3WVK
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BU of 3wvk by Molmil
Time-Resolved Crystal Structure of HindIII with 230sec soaking
Descriptor: DNA (5'-D(*GP*CP*CP*A)-3'), DNA (5'-D(*GP*CP*CP*AP*AP*GP*CP*TP*TP*GP*GP*C)-3'), DNA (5'-D(P*AP*GP*CP*TP*TP*GP*GP*C)-3'), ...
Authors:Kawamura, T, Kobayashi, T, Watanabe, N.
Deposit date:2014-05-22
Release date:2015-04-08
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2 Å)
Cite:Analysis of the HindIII-catalyzed reaction by time-resolved crystallography
Acta Crystallogr.,Sect.D, 71, 2015
2RT8
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BU of 2rt8 by Molmil
Structure of metallo-dna in solution
Descriptor: DNA (5'-D(*CP*GP*CP*GP*TP*TP*GP*TP*CP*C)-3'), DNA (5'-D(*GP*GP*AP*CP*TP*TP*CP*GP*CP*G)-3'), MERCURY (II) ION
Authors:Yamaguchi, H, Sebera, J, Kondo, J, Oda, S, Komuro, T, Kawamura, T, Dairaku, T, Kondo, Y, Okamoto, I, Ono, A, Burda, J.V, Kojima, C, Sychrovsky, V, Tanaka, Y.
Deposit date:2013-06-18
Release date:2014-03-05
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:The structure of metallo-DNA with consecutive thymine-HgII-thymine base pairs explains positive entropy for the metallo base pair formation.
Nucleic Acids Res., 42, 2014
4FZ2
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BU of 4fz2 by Molmil
Crystal structure of the fourth type of archaeal tRNA splicing endonuclease from Candidatus Micrarchaeum acidiphilum ARMAN-2
Descriptor: tRNA intron endonuclease
Authors:Hirata, A, Fujishima, K, Yamagami, R, Kawamura, T, Banfiled, J.F, Kanai, A, Hori, H.
Deposit date:2012-07-06
Release date:2012-09-12
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.252 Å)
Cite:X-ray structure of the fourth type of archaeal tRNA splicing endonuclease: insights into the evolution of a novel three-unit composition and a unique loop involved in broad substrate specificity
Nucleic Acids Res., 40, 2012
1IU8
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BU of 1iu8 by Molmil
The X-ray Crystal Structure of Pyrrolidone-Carboxylate Peptidase from Hyperthermophilic Archaeon Pyrococcus horikoshii
Descriptor: Pyrrolidone-carboxylate peptidase
Authors:Sokabe, M, Kawamura, T, Sakai, N, Yao, M, Watanabe, N, Tanaka, I.
Deposit date:2002-02-28
Release date:2002-03-20
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:The X-ray crystal structure of pyrrolidone-carboxylate peptidase from hyperthermophilic archaea Pyrococcus horikoshii
J.STRUCT.FUNCT.GENOM., 2, 2002
5AZ2
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BU of 5az2 by Molmil
Crystal structure of the Fab fragment of 9E5, a murine monoclonal antibody specific for human epiregulin
Descriptor: anti-human epiregulin antibody 9E5 Fab heavy chain, anti-human epiregulin antibody 9E5 Fab light chain
Authors:Kado, Y, Mizohata, E, Nagatoishi, S, Iijima, M, Shinoda, K, Miyafusa, T, Nakayama, T, Yoshizumi, T, Sugiyama, A, Kawamura, T, Lee, Y.H, Matsumura, H, Doi, H, Fujitani, H, Kodama, T, Shibasaki, Y, Tsumoto, K, Inoue, T.
Deposit date:2015-09-16
Release date:2015-12-09
Last modified:2020-02-26
Method:X-RAY DIFFRACTION (1.603 Å)
Cite:Epiregulin Recognition Mechanisms by Anti-epiregulin Antibody 9E5: STRUCTURAL, FUNCTIONAL, AND MOLECULAR DYNAMICS SIMULATION ANALYSES
J.Biol.Chem., 291, 2016
5E8D
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BU of 5e8d by Molmil
Crystal structure of human epiregulin in complex with the Fab fragment of murine monoclonal antibody 9E5
Descriptor: CHLORIDE ION, GLYCEROL, Proepiregulin, ...
Authors:Kado, Y, Mizohata, E, Nagatoishi, S, Iijima, M, Shinoda, K, Miyafusa, T, Nakayama, T, Yoshizumi, T, Sugiyama, A, Kawamura, T, Lee, Y.H, Matsumura, H, Doi, H, Fujitani, H, Kodama, T, Shibasaki, Y, Tsumoto, K, Inoue, T.
Deposit date:2015-10-14
Release date:2015-12-09
Last modified:2020-02-19
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Epiregulin Recognition Mechanisms by Anti-epiregulin Antibody 9E5: STRUCTURAL, FUNCTIONAL, AND MOLECULAR DYNAMICS SIMULATION ANALYSES
J.Biol.Chem., 291, 2016
3WYQ
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BU of 3wyq by Molmil
Crystal structure of the low-immunogenic core streptavidin mutant LISA-314 (Y22S/Y83S/R84K/E101D/R103K/E116N) at 1.0 A resolution
Descriptor: BIOTIN, GLYCEROL, SULFATE ION, ...
Authors:Kawato, T, Mizohata, E, Meshizuka, T, Doi, H, Kawamura, T, Matsumura, H, Yumura, K, Tsumoto, K, Kodama, T, Inoue, T, Sugiyama, A.
Deposit date:2014-09-05
Release date:2014-12-24
Last modified:2022-08-24
Method:X-RAY DIFFRACTION (1 Å)
Cite:Crystal structure of streptavidin mutant with low immunogenicity.
J.Biosci.Bioeng., 119, 2015
3WYP
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BU of 3wyp by Molmil
Crystal structure of wild-type core streptavidin in complex with D-biotin/biotin-D-sulfoxide at 1.3 A resolution
Descriptor: BIOTIN, BIOTIN-D-SULFOXIDE, GLYCEROL, ...
Authors:Kawato, T, Mizohata, E, Meshizuka, T, Doi, H, Kawamura, T, Matsumura, H, Yumura, K, Tsumoto, K, Kodama, T, Inoue, T, Sugiyama, A.
Deposit date:2014-09-05
Release date:2014-12-24
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Crystal structure of streptavidin mutant with low immunogenicity.
J.Biosci.Bioeng., 119, 2015
7DPJ
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BU of 7dpj by Molmil
H-Ras Q61L in complex with GppNHp (state 1) after structural transition by humidity control
Descriptor: CALCIUM ION, GTPase HRas, MAGNESIUM ION, ...
Authors:Taniguchi, H, Matsumoto, S, Miyamoto, R, Kawamura, T, Kumasaka, T, Kataoka, T.
Deposit date:2020-12-19
Release date:2021-07-28
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.976 Å)
Cite:Oncogenic mutations Q61L and Q61H confer active form-like structural features to the inactive state (state 1) conformation of H-Ras protein.
Biochem.Biophys.Res.Commun., 565, 2021
7DPH
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BU of 7dph by Molmil
H-Ras Q61H in complex with GppNHp (state 1) after structural transition by humidity control
Descriptor: GTPase HRas, MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER, ...
Authors:Taniguchi, H, Matsumoto, S, Kawamura, T, Kumasaka, T, Kataoka, T.
Deposit date:2020-12-19
Release date:2021-07-28
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.54 Å)
Cite:Oncogenic mutations Q61L and Q61H confer active form-like structural features to the inactive state (state 1) conformation of H-Ras protein.
Biochem.Biophys.Res.Commun., 565, 2021
7CDM
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BU of 7cdm by Molmil
Lysozyme room-temperature structure determined by SS-ROX combined with HAG method, 42 kGy (4500 images from 2nd half of data set)
Descriptor: Lysozyme C, MALONATE ION, SODIUM ION
Authors:Hasegawa, K, Baba, S, Kawamura, T, Yamamoto, M, Kumasaka, T.
Deposit date:2020-06-20
Release date:2021-03-10
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Evaluation of the data-collection strategy for room-temperature micro-crystallography studied by serial synchrotron rotation crystallography combined with the humid air and glue-coating method.
Acta Crystallogr.,Sect.D, 77, 2021
7CDN
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BU of 7cdn by Molmil
Lysozyme room-temperature structure determined by SS-ROX combined with HAG method, 42 kGy (9000 images)
Descriptor: Lysozyme C, MALONATE ION, SODIUM ION
Authors:Hasegawa, K, Baba, S, Kawamura, T, Yamamoto, M, Kumasaka, T.
Deposit date:2020-06-20
Release date:2021-03-10
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Evaluation of the data-collection strategy for room-temperature micro-crystallography studied by serial synchrotron rotation crystallography combined with the humid air and glue-coating method.
Acta Crystallogr.,Sect.D, 77, 2021

 

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