Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
3Q3I
DownloadVisualize
BU of 3q3i by Molmil
Crystal structure of the Actinobacillus pleuropneumoniae HMW1C glycosyltransferase in the presence of peptide N1131
Descriptor: GLYCEROL, HMW1C-like glycosyltransferase
Authors:Kawai, F, Yeo, H.J.
Deposit date:2010-12-21
Release date:2011-08-24
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.45 Å)
Cite:Structural Insights into the Glycosyltransferase Activity of the Actinobacillus pleuropneumoniae HMW1C-like Protein.
J.Biol.Chem., 286, 2011
3Q3H
DownloadVisualize
BU of 3q3h by Molmil
Crystal structure of the Actinobacillus pleuropneumoniae HMW1C glycosyltransferase in complex with UDP-GLC
Descriptor: GLYCEROL, HMW1C-like glycosyltransferase, URIDINE-5'-DIPHOSPHATE
Authors:Kawai, F, Yeo, H.J.
Deposit date:2010-12-21
Release date:2011-08-24
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Structural Insights into the Glycosyltransferase Activity of the Actinobacillus pleuropneumoniae HMW1C-like Protein.
J.Biol.Chem., 286, 2011
3Q3E
DownloadVisualize
BU of 3q3e by Molmil
Crystal structure of the Actinobacillus pleuropneumoniae HMW1C glycosyltransferase
Descriptor: GLYCEROL, HMW1C-like glycosyltransferase
Authors:Kawai, F, Yeo, H.J.
Deposit date:2010-12-21
Release date:2011-08-24
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structural Insights into the Glycosyltransferase Activity of the Actinobacillus pleuropneumoniae HMW1C-like Protein.
J.Biol.Chem., 286, 2011
5ZL9
DownloadVisualize
BU of 5zl9 by Molmil
Engineered chitinase, SmChiAB-FYSFV
Descriptor: Chitinase AB, GLYCEROL
Authors:Kawai, F, Nakamura, A, Iino, R.
Deposit date:2018-03-27
Release date:2018-07-11
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Engineered chitinase, SmChiAB-FYSFV
Acs Omega, 2018
3UAU
DownloadVisualize
BU of 3uau by Molmil
Crystal structure of the lipoprotein JlpA
Descriptor: Surface-exposed lipoprotein
Authors:Kawai, F, Yeo, H.J.
Deposit date:2011-10-22
Release date:2012-07-25
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Crystal structure of JlpA, a surface-exposed lipoprotein adhesin of Campylobacter jejuni.
J.Struct.Biol., 177, 2012
3A3J
DownloadVisualize
BU of 3a3j by Molmil
Crystal structures of penicillin binding protein 5 from Haemophilus influenzae
Descriptor: PBP5, SULFATE ION
Authors:Kawai, F, Roper, D.I, Park, S.-Y, Tame, J.R.H.
Deposit date:2009-06-12
Release date:2009-12-22
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Crystal structures of penicillin-binding proteins 4 and 5 from Haemophilus influenzae
J.Mol.Biol., 396, 2010
3A3D
DownloadVisualize
BU of 3a3d by Molmil
Crystal structure of penicillin binding protein 4 (dacB) from Haemophilus influenzae
Descriptor: GLYCEROL, Penicillin-binding protein 4
Authors:Kawai, F, Roper, D.I, Park, S.-Y, Tame, J.R.H.
Deposit date:2009-06-12
Release date:2009-12-22
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystal structures of penicillin-binding proteins 4 and 5 from Haemophilus influenzae
J.Mol.Biol., 396, 2010
3A3E
DownloadVisualize
BU of 3a3e by Molmil
Crystal structure of penicillin binding protein 4 (dacB) from Haemophilus influenzae, complexed with novel beta-lactam (CMV)
Descriptor: (2R,4S)-2-[(1R)-1-({(2R)-2-[(4-ethyl-2,3-dioxopiperazin-1-yl)amino]-2-phenylacetyl}amino)-2-oxoethyl]-5,5-dimethyl-1,3-thiazolidine-4-carboxylic acid, Penicillin-binding protein 4
Authors:Kawai, F, Roper, D.I, Park, S.-Y, Tame, J.R.H.
Deposit date:2009-06-12
Release date:2009-12-22
Last modified:2013-11-20
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Crystal structures of penicillin-binding proteins 4 and 5 from Haemophilus influenzae
J.Mol.Biol., 396, 2010
3A3F
DownloadVisualize
BU of 3a3f by Molmil
Crystal structure of penicillin binding protein 4 (dacB) from Haemophilus influenzae,complexed with novel beta-lactam (FMZ)
Descriptor: (2R,4S)-5,5-dimethyl-2-[(1R)-2-oxo-1-({(2R)-2-[(2-oxoimidazolidin-1-yl)amino]-2-phenylacetyl}amino)ethyl]-1,3-thiazolidine-4-carboxylic acid, Penicillin-binding protein 4
Authors:Kawai, F, Roper, D.I, Park, S.-Y, Tame, J.R.H.
Deposit date:2009-06-12
Release date:2009-12-22
Last modified:2013-11-20
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal structures of penicillin-binding proteins 4 and 5 from Haemophilus influenzae
J.Mol.Biol., 396, 2010
3A3I
DownloadVisualize
BU of 3a3i by Molmil
Crystal structure of penicillin binding protein 4 (dacB) from Haemophilus influenzae, complexed with ampicillin (AIX)
Descriptor: (2R,4S)-2-[(1R)-1-{[(2R)-2-amino-2-phenylacetyl]amino}-2-oxoethyl]-5,5-dimethyl-1,3-thiazolidine-4-carboxylic acid, Penicillin-binding protein 4
Authors:Kawai, F, Roper, D.I, Park, S.-Y, Tame, J.R.H.
Deposit date:2009-06-12
Release date:2009-12-22
Last modified:2013-11-20
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structures of penicillin-binding proteins 4 and 5 from Haemophilus influenzae
J.Mol.Biol., 396, 2010
4GIO
DownloadVisualize
BU of 4gio by Molmil
Crystal structure of Campylobacter jejuni cj0090
Descriptor: BROMIDE ION, Putative lipoprotein
Authors:Kawai, F, Yeo, H.J.
Deposit date:2012-08-08
Release date:2012-09-26
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal structure of the Campylobacter jejuni Cj0090 protein reveals a novel variant of the immunoglobulin fold among bacterial lipoproteins.
Proteins, 80, 2012
4WFJ
DownloadVisualize
BU of 4wfj by Molmil
Crystal structure of PET-degrading cutinase Cut190 S226P mutant in Ca(2+)-bound state at 1.75 angstrom resolution
Descriptor: CALCIUM ION, CHLORIDE ION, Cutinase
Authors:Miyakawa, T, Mizushima, H, Ohtsuka, J, Oda, M, Kawai, F, Tanokura, M.
Deposit date:2014-09-15
Release date:2014-12-24
Last modified:2020-01-29
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Structural basis for the Ca(2+)-enhanced thermostability and activity of PET-degrading cutinase-like enzyme from Saccharomonospora viridis AHK190.
Appl.Microbiol.Biotechnol., 99, 2015
4WFK
DownloadVisualize
BU of 4wfk by Molmil
Crystal structure of PET-degrading cutinase Cut190 S226P mutant in Ca(2+)-bound state at 2.35 angstrom resolution
Descriptor: CALCIUM ION, CHLORIDE ION, Cutinase
Authors:Miyakawa, T, Mizushima, H, Ohtsuka, J, Oda, M, Kawai, F, Tanokura, M.
Deposit date:2014-09-15
Release date:2014-12-24
Last modified:2020-01-29
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:Structural basis for the Ca(2+)-enhanced thermostability and activity of PET-degrading cutinase-like enzyme from Saccharomonospora viridis AHK190.
Appl.Microbiol.Biotechnol., 99, 2015
2NOO
DownloadVisualize
BU of 2noo by Molmil
Crystal Structure of Mutant NikA
Descriptor: IODIDE ION, NICKEL (II) ION, Nickel-binding periplasmic protein
Authors:Addy, C, Ohara, M, Kawai, F, Kidera, A, Ikeguchi, M, Fuchigami, S, Osawa, M, Shimada, I, Park, S.Y, Tame, J.R.H, Heddle, J.G.
Deposit date:2006-10-26
Release date:2007-01-23
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Nickel binding to NikA: an additional binding site reconciles spectroscopy, calorimetry and crystallography.
Acta Crystallogr.,Sect.D, 63, 2007
7CTR
DownloadVisualize
BU of 7ctr by Molmil
Closed form of PET-degrading cutinase Cut190 with thermostability-improving mutations of S226P/R228S/Q138A/D250C-E296C/Q123H/N202H
Descriptor: 1,4-DIETHYLENE DIOXIDE, Alpha/beta hydrolase family protein
Authors:Emori, M, Numoto, N, Senga, A, Bekker, G.J, Kamiya, N, Ito, N, Kawai, F, Oda, M.
Deposit date:2020-08-20
Release date:2021-02-03
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.2 Å)
Cite:Structural basis of mutants of PET-degrading enzyme from Saccharomonospora viridis AHK190 with high activity and thermal stability.
Proteins, 89, 2021
4WFI
DownloadVisualize
BU of 4wfi by Molmil
Crystal structure of PET-degrading cutinase Cut190 S226P mutant in Ca(2+)-free state
Descriptor: Cutinase
Authors:Miyakawa, T, Mizushima, H, Ohtsuka, J, Oda, M, Kawai, F, Tanokura, M.
Deposit date:2014-09-15
Release date:2014-12-24
Last modified:2020-01-29
Method:X-RAY DIFFRACTION (1.446 Å)
Cite:Structural basis for the Ca(2+)-enhanced thermostability and activity of PET-degrading cutinase-like enzyme from Saccharomonospora viridis AHK190.
Appl.Microbiol.Biotechnol., 99, 2015
4YUS
DownloadVisualize
BU of 4yus by Molmil
Crystal structure of photoactivated adenylyl cyclase of a cyanobacteriaOscillatoria acuminata in hexagonal form
Descriptor: FLAVIN MONONUCLEOTIDE, Family 3 adenylate cyclase
Authors:Park, S.-Y, Ohki, M, Sugiyama, K, Kawai, F, Iseki, M.
Deposit date:2015-03-19
Release date:2016-06-01
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural insight into photoactivation of an adenylate cyclase from a photosynthetic cyanobacterium
Proc.Natl.Acad.Sci.USA, 113, 2016
4YUT
DownloadVisualize
BU of 4yut by Molmil
Crystal structure of photoactivated adenylyl cyclase of a cyanobacteriaOscillatoria acuminata in orthorhombic form
Descriptor: FLAVIN MONONUCLEOTIDE, Family 3 adenylate cyclase
Authors:Park, S.-Y, Ohki, M, Sugiyama, K, Kawai, F, Iseki, M.
Deposit date:2015-03-19
Release date:2016-06-01
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Structural insight into photoactivation of an adenylate cyclase from a photosynthetic cyanobacterium
Proc.Natl.Acad.Sci.USA, 113, 2016
5ZNO
DownloadVisualize
BU of 5zno by Molmil
Crystal structure of PET-degrading cutinase Cut190 S176A/S226P/R228S/ mutant in Ca(2+)-bound state
Descriptor: Alpha/beta hydrolase family protein, CALCIUM ION, GLYCEROL
Authors:Numoto, N, Inaba, S, Yamagami, Y, Kamiya, N, Bekker, G.J, Ishii, K, Uchiyama, S, Kawai, F, Ito, N, Oda, M.
Deposit date:2018-04-10
Release date:2018-09-12
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.60264349 Å)
Cite:Structural Dynamics of the PET-Degrading Cutinase-like Enzyme from Saccharomonospora viridis AHK190 in Substrate-Bound States Elucidates the Ca2+-Driven Catalytic Cycle.
Biochemistry, 57, 2018
5ZRS
DownloadVisualize
BU of 5zrs by Molmil
Crystal structure of PET-degrading cutinase Cut190 S176A/S226P/R228S mutant in monoethyl adipate bound state
Descriptor: 6-ethoxy-6-oxohexanoic acid, Alpha/beta hydrolase family protein, CALCIUM ION, ...
Authors:Numoto, N, Kamiya, N, Bekker, G.J, Yamagami, Y, Inaba, S, Ishii, K, Uchiyama, S, Kawai, F, Ito, N, Oda, M.
Deposit date:2018-04-25
Release date:2018-09-12
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Structural Dynamics of the PET-Degrading Cutinase-like Enzyme from Saccharomonospora viridis AHK190 in Substrate-Bound States Elucidates the Ca2+-Driven Catalytic Cycle.
Biochemistry, 57, 2018
5ZRR
DownloadVisualize
BU of 5zrr by Molmil
Crystal structure of PET-degrading cutinase Cut190 S176A/S226P/R228S mutant in monoethyl succinate bound state
Descriptor: 4-ethoxy-4-oxobutanoic acid, Alpha/beta hydrolase family protein, GLYCEROL, ...
Authors:Numoto, N, Kamiya, N, Bekker, G.J, Yamagami, Y, Inaba, S, Ishii, K, Uchiyama, S, Kawai, F, Ito, N, Oda, M.
Deposit date:2018-04-25
Release date:2018-09-12
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.34 Å)
Cite:Structural Dynamics of the PET-Degrading Cutinase-like Enzyme from Saccharomonospora viridis AHK190 in Substrate-Bound States Elucidates the Ca2+-Driven Catalytic Cycle.
Biochemistry, 57, 2018
5ZRQ
DownloadVisualize
BU of 5zrq by Molmil
Crystal structure of PET-degrading cutinase Cut190 S176A/S226P/R228S mutant in Zn(2+)-bound state
Descriptor: Alpha/beta hydrolase family protein, CALCIUM ION, GLYCEROL, ...
Authors:Numoto, N, Kamiya, N, Bekker, G.J, Yamagami, Y, Inaba, S, Ishii, K, Uchiyama, S, Kawai, F, Ito, N, Oda, M.
Deposit date:2018-04-25
Release date:2018-09-12
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.12 Å)
Cite:Structural Dynamics of the PET-Degrading Cutinase-like Enzyme from Saccharomonospora viridis AHK190 in Substrate-Bound States Elucidates the Ca2+-Driven Catalytic Cycle.
Biochemistry, 57, 2018
6AID
DownloadVisualize
BU of 6aid by Molmil
Structural insights into the unique polylactate degrading mechanism of Thermobifida alba cutinase
Descriptor: CALCIUM ION, Esterase, LACTIC ACID, ...
Authors:Kitadokoro, K, Kakara, M, Matsui, S, Osokoshi, R, Thumarat, U, Kawai, F, Kamitani, S.
Deposit date:2018-08-22
Release date:2019-02-27
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Structural insights into the unique polylactate-degrading mechanism of Thermobifida alba cutinase.
Febs J., 286, 2019
7ECD
DownloadVisualize
BU of 7ecd by Molmil
Crystal structure of Tam41 from Firmicutes bacterium, complex with CTP-Mg
Descriptor: BROMIDE ION, CYTIDINE-5'-TRIPHOSPHATE, MAGNESIUM ION, ...
Authors:Kimura, K, Kawai, F, Kubota-Kawai, H, Watanabe, Y, Tamura, Y.
Deposit date:2021-03-12
Release date:2022-01-19
Last modified:2022-04-13
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Crystal structure of Tam41 cytidine diphosphate diacylglycerol synthase from a Firmicutes bacterium.
J.Biochem., 171, 2022
3VIS
DownloadVisualize
BU of 3vis by Molmil
Crystal structure of cutinase Est119 from Thermobifida alba AHK119
Descriptor: 2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHOXY]-ETHOXY}-ETHANOL, Esterase
Authors:Kitadokoro, K, Thumarat, U, Nakamura, R, Nishimura, K, Karatani, H, Suzuki, H, Kawai, F.
Deposit date:2011-10-11
Release date:2012-04-11
Method:X-RAY DIFFRACTION (1.76 Å)
Cite:Crystal structure of cutinase Est119 from Thermobida alba AHK119 that can degrade modpolyethylene terephthalate at 1.76 A resolution.
POLYM.DEGRAD.STAB., 97, 2012

 

123>

217705

PDB entries from 2024-03-27

PDB statisticsPDBj update infoContact PDBjnumon