Author results

5AX6
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THE CRYSTAL STRUCTURE OF COFB, THE MINOR PILIN SUBUNIT OF CFA/III FROM HUMAN ENTEROTOXIGENIC ESCHERICHIA COLI.
Descriptor:CofB, ACETATE ION
Authors:Kawahara, K., Oki, K., Fukaksua, F., Maruno, T., Kobayashi, Y., Daisuke, M., Taniguchi, T., Honda, T., Iida, T., Nakamura, S., Ohkubo, T.
Deposit date:2015-07-16
Release date:2016-03-09
Last modified:2016-04-20
Method:X-RAY DIFFRACTION (1.88 Å)
Cite:Homo-trimeric Structure of the Type IVb Minor Pilin CofB Suggests Mechanism of CFA/III Pilus Assembly in Human Enterotoxigenic Escherichia coli
J.Mol.Biol., 428, 2016
1WZB
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CRYSTAL STRUCTURE OF THE COLLAGEN TRIPLE HELIX MODEL [{HYP(R)-HYP(R)-GLY}10]3
Descriptor:Collagen triple helix
Authors:Kawahara, K., Nakamura, S., Nishi, Y., Uchiyama, S., Nishiuchi, Y., Nakazawa, T., Ohkubo, T., Kobayashi, Y.
Deposit date:2005-03-03
Release date:2006-01-31
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Effect of hydration on the stability of the collagen-like triple-helical structure of [4(R)-hydroxyprolyl-4(R)-hydroxyprolylglycine]10
Biochemistry, 44, 2005
5H03
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CRYSTAL STRUCTURE OF AN ADP-RIBOSYLATING TOXIN BECA FROM C. PERFRINGENS
Descriptor:Binary enterotoxin of Clostridium perfringens component a
Authors:Kawahara, K., Yonogi, S., Munetomo, R., Oki, H., Yoshida, T., Ohkubo, T., Kumeda, Y., Matsuda, S., Kodama, T., Iida, T., Nakamura, S.
Deposit date:2016-10-03
Release date:2016-11-02
Last modified:2016-11-09
Method:X-RAY DIFFRACTION (1.89 Å)
Cite:Crystal structure of the ADP-ribosylating component of BEC, the binary enterotoxin of Clostridium perfringens.
Biochem.Biophys.Res.Commun., 480, 2016
5H04
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CRYSTAL STRUCTURE OF AN ADP-RIBOSYLATING TOXIN BECA OF A NOVEL BINARY ENTEROTOXIN OF C. PERFRINGENS WITH NADH
Descriptor:Binary enterotoxin of Clostridium perfringens component a, 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE
Authors:Kawahara, K., Yonogi, S., Munetomo, R., Oki, H., Yoshida, T., Ohkubo, T., Kumeda, Y., Matsuda, S., Kodama, T., Iida, T., Nakamura, S.
Deposit date:2016-10-03
Release date:2016-11-02
Last modified:2016-11-09
Method:X-RAY DIFFRACTION (1.825 Å)
Cite:Crystal structure of the ADP-ribosylating component of BEC, the binary enterotoxin of Clostridium perfringens.
Biochem.Biophys.Res.Commun., 480, 2016
3WJ4
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CRYSTAL STRUCTURE OF PPARGAMMA LIGAND BINDING DOMAIN IN COMPLEX WITH TRIBUTYLTIN
Descriptor:Peroxisome proliferator-activated receptor gamma, tributylstannanyl
Authors:Harada, S., Hiromori, Y., Fukakusa, S., Kawahara, K., Nakamura, S., Noda, M., Uchiyama, S., Fukui, K., Nishikawa, J., Nagase, H., Kobayashi, Y., Ohkubo, T., Yoshida, T., Nakanishi, T.
Deposit date:2013-10-04
Release date:2014-10-15
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Structural basis for PPARgamma transactivation by endocrine disrupting organotin compounds
To be Published
3WJ5
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CRYSTAL STRUCTURE OF PPARGAMMA LIGAND BINDING DOMAIN IN COMPLEX WITH TRIPHENYLTIN
Descriptor:Peroxisome proliferator-activated receptor gamma, triphenylstannanyl
Authors:Harada, S., Hiromori, Y., Fukakusa, S., Kawahara, K., Nakamura, S., Noda, M., Uchiyama, S., Fukui, K., Nishikawa, J., Nagase, H., Kobayashi, Y., Ohkubo, T., Yoshida, T., Nakanishi, T.
Deposit date:2013-10-04
Release date:2014-10-15
Last modified:2019-06-12
Method:X-RAY DIFFRACTION (1.89 Å)
Cite:Structural basis for PPARgamma transactivation by endocrine disrupting organotin compounds
To be Published
4U4P
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CRYSTAL STRUCTURE OF THE HUMAN CONDENSIN SMC HINGE DOMAIN HETERODIMER WITH SHORT COILED COILS
Descriptor:Structural maintenance of chromosomes protein 2, Structural maintenance of chromosomes protein 4
Authors:Uchiyama, S., Kawahara, K., Hosokawa, Y., Fukakusa, S., Oki, H., Nakamura, S., Noda, M., Takino, R., Miyahara, Y., Maruno, T., Kobayashi, Y., Ohkubo, T., Fukui, K.
Deposit date:2014-07-24
Release date:2015-08-26
Method:X-RAY DIFFRACTION (1.89 Å)
Cite:Structural basis for dimer information and DNA recognition of human SMC proteins
to be published
2ZXY
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CRYSTAL STRUCTURE OF CYTOCHROME C555 FROM AQUIFEX AEOLICUS
Descriptor:Cytochrome c552, HEME C
Authors:Obuchi, M., Kawahara, K., Motooka, D., Nakamura, S., Yamanaka, M., Takeda, T., Uchiyama, S., Kobayashi, Y., Ohkubo, T., Sambongi, Y.
Deposit date:2009-01-09
Release date:2009-08-04
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.15 Å)
Cite:Hyperstability and crystal structure of cytochrome c(555) from hyperthermophilic Aquifex aeolicus
Acta Crystallogr.,Sect.D, 65, 2009
3B2C
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CRYSTAL STRUCTURE OF THE COLLAGEN TRIPLE HELIX MODEL [{PRO-HYP(R)-GLY}4-{HYP(S)-PRO-GLY}2-{PRO-HYP(R)-GLY}4]3
Descriptor:Collagen-like peptide
Authors:Motooka, D., Kawahara, K., Nakamura, S., Doi, M., Nishi, Y., Nishiuchi, Y., Nakazawa, T., Yoshida, T., Ohkubo, T., Kobayashi, Y., Kang, Y.K., Uchiyama, S.
Deposit date:2011-07-26
Release date:2012-04-04
Method:X-RAY DIFFRACTION (1.36 Å)
Cite:The triple helical structure and stability of collagen model peptide with 4(S)-hydroxyprolyl-pro-gly units
Biopolymers, 98, 2011
3VOR
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CRYSTAL STRUCTURE ANALYSIS OF THE COFA
Descriptor:CFA/III pilin
Authors:Fukakusa, S., Kawahara, K., Nakamura, S., Iwasita, T., Baba, S., Nishimura, M., Kobayashi, Y., Honda, T., Iida, T., Taniguchi, T., Ohkubo, T.
Deposit date:2012-02-06
Release date:2012-09-26
Last modified:2013-07-31
Method:X-RAY DIFFRACTION (0.9 Å)
Cite:Structure of the CFA/III major pilin subunit CofA from human enterotoxigenic Escherichia coli determined at 0.90 A resolution by sulfur-SAD phasing
Acta Crystallogr.,Sect.D, 68, 2012
5B3I
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HOMO-DIMERIC STRUCTURE OF CYTOCHROME C' FROM THERMOPHILIC HYDROGENOPHILUS THERMOLUTEOLUS
Descriptor:Cytochrome c prime, HEME C
Authors:Fujii, S., Oki, H., Kawahara, K., Yamane, D., Yamanaka, M., Maruno, T., Kobayashi, Y., Masanari, M., Wakai, S., Nishihara, H., Ohkubo, T., Sambongi, Y.
Deposit date:2016-02-29
Release date:2017-03-01
Last modified:2019-10-02
Method:X-RAY DIFFRACTION (1.89 Å)
Cite:Structural and functional insights into thermally stable cytochrome c' from a thermophile
Protein Sci., 26, 2017
5B6Q
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CRYSTAL STRUCTURE OF MONOMERIC CYTOCHROME C5 FROM SHEWANELLA VIOLACEA
Descriptor:Soluble cytochrome cA, HEME C, IMIDAZOLE
Authors:Masanari, M., Fujii, S., Kawahara, K., Oki, H., Tsujino, H., Maruno, T., Kobayashi, Y., Ohkubo, T., Nishiyama, M., Harada, Y., Wakai, S., Sambongi, Y.
Deposit date:2016-06-01
Release date:2016-10-19
Last modified:2019-10-02
Method:X-RAY DIFFRACTION (1.78 Å)
Cite:Comparative study on stabilization mechanism of monomeric cytochrome c5 from deep-sea piezophilic Shewanella violacea
Biosci.Biotechnol.Biochem., 2016
5YPZ
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CRYSTAL STRUCTURE OF MINOR PILIN COFB FROM CFA/III COMPLEXED WITH N-TERMINAL PEPTIDE FRAGMENT OF COFJ
Descriptor:CofB, CofJ
Authors:Oki, H., Kawahara, K., Maruno, T., Imai, T., Muroga, Y., Fukakusa, S., Iwashita, T., Kobayashi, Y., Matsuda, S., Kodama, T., Iida, T., Yoshida, T., Ohkubo, T., Nakamura, S.
Deposit date:2017-11-04
Release date:2018-06-27
Last modified:2018-07-25
Method:X-RAY DIFFRACTION (3.521 Å)
Cite:Interplay of a secreted protein with type IVb pilus for efficient enterotoxigenicEscherichia colicolonization.
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
5YQ0
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CRYSTAL STRUCTURE OF SECRETED PROTEIN COFJ FROM ETEC.
Descriptor:CofJ, CALCIUM ION
Authors:Oki, H., Kawahara, K., Maruno, T., Imai, T., Muroga, Y., Fukakusa, S., Iwashita, T., Kobayashi, Y., Matsuda, S., Kodama, T., Iida, T., Yoshida, T., Ohkubo, T., Nakamura, S.
Deposit date:2017-11-04
Release date:2018-06-27
Last modified:2018-07-25
Method:X-RAY DIFFRACTION (1.76 Å)
Cite:Interplay of a secreted protein with type IVb pilus for efficient enterotoxigenicEscherichia colicolonization
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
6A3K
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CRYSTAL STRUCTURE OF CYTOCHROME C' FROM SHEWANELLA BENTHICA DB6705
Descriptor:Cytochrome c, HEME C, PENTAETHYLENE GLYCOL
Authors:Suka, A., Oki, H., Kato, Y., Kawahara, K., Ohkubo, T., Maruno, T., Kobayashi, Y., Fujii, S., Wakai, S., Sambongi, Y.
Deposit date:2018-06-15
Release date:2019-06-12
Last modified:2019-10-02
Method:X-RAY DIFFRACTION (1.71 Å)
Cite:Stability of cytochromes c' from psychrophilic and piezophilic Shewanella species: implications for complex multiple adaptation to low temperature and high hydrostatic pressure.
Extremophiles, 23, 2019
6A3L
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CRYSTAL STRUCTURE OF CYTOCHROME C' FROM SHEWANELLA VIOLACEA DSS12
Descriptor:Cytochrome c, HEME C
Authors:Suka, A., Oki, H., Kato, Y., Kawahara, K., Ohkubo, T., Maruno, T., Kobayashi, Y., Fujii, S., Wakai, S., Sambongi, Y.
Deposit date:2018-06-15
Release date:2019-06-12
Last modified:2019-10-02
Method:X-RAY DIFFRACTION (2.14 Å)
Cite:Stability of cytochromes c' from psychrophilic and piezophilic Shewanella species: implications for complex multiple adaptation to low temperature and high hydrostatic pressure.
Extremophiles, 23, 2019
3T1F
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CRYSTAL STRUCTURE OF THE MOUSE CD1D-GLC-DAG-S2 COMPLEX
Descriptor:Antigen-presenting glycoprotein CD1d1, Beta-2-microglobulin, N-ACETYL-D-GLUCOSAMINE, ...
Authors:Girardi, E., Zajonc, D.M.
Deposit date:2011-07-21
Release date:2011-09-21
Last modified:2011-10-05
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Invariant natural killer T cells recognize glycolipids from pathogenic Gram-positive bacteria.
Nat.Immunol., 12, 2011