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3VSM
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BU of 3vsm by Molmil
The crystal structure of novel chondroition lyase ODV-E66, baculovirus envelope protein
Descriptor: GLYCEROL, Occlusion-derived virus envelope protein E66
Authors:Kawaguchi, Y, Sugiura, N, Kimata, K, Kimura, M, Kakuta, Y.
Deposit date:2012-04-27
Release date:2013-05-22
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2 Å)
Cite:The crystal structure of novel chondroition lyase ODV-E66, baculovirus envelope protein
To be Published
3VSN
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BU of 3vsn by Molmil
The crystal structure of novel chondroition lyase ODV-E66, baculovirus envelope protein
Descriptor: GLYCEROL, IODIDE ION, Occlusion-derived virus envelope protein E66
Authors:Kawaguchi, Y, Sugiura, N, Kimata, K, Kimura, M, Kakuta, Y.
Deposit date:2012-04-27
Release date:2013-05-22
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2 Å)
Cite:The crystal structure of novel chondroition lyase ODV-E66, baculovirus envelope protein
To be Published
3WVX
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BU of 3wvx by Molmil
Structure of D48A hen egg white lysozyme
Descriptor: Lysozyme C
Authors:Kawaguchi, Y, Yoneda, K, Araki, T.
Deposit date:2014-06-10
Release date:2015-06-10
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.58 Å)
Cite:The role of Asp48 in the hydrogen bonding network involving Asp52 of hen egg white lysozyme
TO BE PUBLISHED
3WVY
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BU of 3wvy by Molmil
Structure of D48A hen egg white lysozyme in complex with (GlcNAc)4
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Lysozyme C
Authors:Kawaguchi, Y, Yoneda, K, Araki, T.
Deposit date:2014-06-11
Release date:2015-06-10
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.56 Å)
Cite:The role of Asp48 in the hydrogen bonding network involving Asp52 of hen egg white lysozyme
TO BE PUBLISHED
3WYH
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BU of 3wyh by Molmil
Structure of disulfide bond deletion mutant of ostrich egg white lysozyme
Descriptor: HEXAETHYLENE GLYCOL, Lysozyme g, TRIS(HYDROXYETHYL)AMINOMETHANE
Authors:Kawaguchi, Y, Yoneda, K, Araki, T.
Deposit date:2014-08-28
Release date:2014-10-15
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.77 Å)
Cite:Structure of disulfide bond deletion mutant of ostrich egg white lysozyme
To be Published
6KBR
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BU of 6kbr by Molmil
Crystal structure of Human KLK4 and SPINK2 derived KLK4 inhibitor complex
Descriptor: GLYCEROL, K41043, Kallikrein-4
Authors:Kawaguchi, Y, Nishimiya, D.
Deposit date:2019-06-26
Release date:2019-07-17
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2 Å)
Cite:A protein scaffold, engineered SPINK2, for generation of inhibitors with high affinity and specificity against target proteases.
Sci Rep, 9, 2019
7YRU
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BU of 7yru by Molmil
ALK2 antibody complex
Descriptor: Activin receptor type-1, antibody heavy chain, antibody light chain
Authors:Kawaguchi, Y, Nakamura, K, Suzuki, M, Tsuji, S, Katagiri, T.
Deposit date:2022-08-10
Release date:2023-05-17
Last modified:2023-06-07
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:A blocking monoclonal antibody reveals dimerization of intracellular domains of ALK2 associated with genetic disorders.
Nat Commun, 14, 2023
1J2A
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BU of 1j2a by Molmil
Structure of E. coli cyclophilin B K163T mutant
Descriptor: cyclophilin B
Authors:Konno, M, Sano, Y, Okudaira, K, Kawaguchi, Y, Yamagishi-Ohmori, Y, Fushinobu, S, Matsuzawa, H.
Deposit date:2002-12-26
Release date:2004-02-10
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Escherichia coli cyclophilin B binds a highly distorted form of trans-prolyl peptide isomer
Eur.J.Biochem., 271, 2004
4YTY
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BU of 4yty by Molmil
Structure of rat xanthine oxidoreductase, C535A/C992R/C1324S, NADH bound form
Descriptor: 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE, BICARBONATE ION, CALCIUM ION, ...
Authors:Nishino, T, Okamoto, K, Kawaguchi, Y, Matsumura, T, Eger, B.T, Pai, E.F.
Deposit date:2015-03-18
Release date:2015-04-22
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:The C-terminal peptide plays a role in the formation of an intermediate form during the transition between xanthine dehydrogenase and xanthine oxidase.
Febs J., 282, 2015
4YSW
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BU of 4ysw by Molmil
Structure of rat xanthine oxidoreductase, C-terminal deletion protein variant, NADH bound form
Descriptor: 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE, BICARBONATE ION, CALCIUM ION, ...
Authors:Nishino, T, Okamoto, K, Kawaguchi, Y, Matsumura, T, Eger, B.T, Pai, E.F.
Deposit date:2015-03-17
Release date:2015-04-22
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.99 Å)
Cite:The C-terminal peptide plays a role in the formation of an intermediate form during the transition between xanthine dehydrogenase and xanthine oxidase.
Febs J., 282, 2015
4YTZ
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BU of 4ytz by Molmil
Rat xanthine oxidoreductase, C-terminal deletion protein variant, crystal grown without dithiothreitol
Descriptor: BICARBONATE ION, CALCIUM ION, FE2/S2 (INORGANIC) CLUSTER, ...
Authors:Nishino, T, Okamoto, K, Kawaguchi, Y, Matsumura, T, Eger, B.T, Pai, E.F, Nishino, T.
Deposit date:2015-03-18
Release date:2015-04-22
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:The C-terminal peptide plays a role in the formation of an intermediate form during the transition between xanthine dehydrogenase and xanthine oxidase
Febs J., 282, 2015
1V9T
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BU of 1v9t by Molmil
Structure of E. coli cyclophilin B K163T mutant bound to succinyl-ALA-PRO-ALA-P-nitroanilide
Descriptor: (SIN)APA(NIT), cyclophilin B
Authors:Konno, M, Sano, Y, Okudaira, K, Kawaguchi, Y, Yamagishi-Ohmori, Y, Fushinobu, S, Matsuzawa, H.
Deposit date:2004-02-03
Release date:2004-09-21
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Escherichia coli cyclophilin B binds a highly distorted form of trans-prolyl peptide isomer
Eur.J.Biochem., 271, 2004
1VAI
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BU of 1vai by Molmil
Structure of e. coli cyclophilin B K163T mutant bound to n-acetyl-ala-ala-pro-ala-7-amino-4-methylcoumarin
Descriptor: (ACE)AAPA(MCM), cyclophilin B
Authors:Konno, M, Sano, Y, Okudaira, K, Kawaguchi, Y, Yamagishi-Ohmori, Y, Fushinobu, S, Matsuzawa, H.
Deposit date:2004-02-17
Release date:2004-09-21
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Escherichia coli cyclophilin B binds a highly distorted form of trans-prolyl peptide isomer
Eur.J.Biochem., 271, 2004
6ABU
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BU of 6abu by Molmil
Rat Xanthine oxidoreductase, NAD bound form
Descriptor: BICARBONATE ION, FE2/S2 (INORGANIC) CLUSTER, FLAVIN-ADENINE DINUCLEOTIDE, ...
Authors:Okamoto, K, Kawaguchi, Y.
Deposit date:2018-07-24
Release date:2019-07-31
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.77 Å)
Cite:Rat Xanthine oxidoreductase, NAD bound form
To Be Published
3AP2
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BU of 3ap2 by Molmil
Crystal structure of human tyrosylprotein sulfotransferase-2 complexed with PAP,C4 peptide, and phosphate ion
Descriptor: ADENOSINE-3'-5'-DIPHOSPHATE, C4 peptide, GLYCEROL, ...
Authors:Teramoto, T, Fujikawa, Y, Kawaguchi, Y, Kurogi, K, Soejima, M, Adachi, R, Nakanishi, Y, Mishiro-Sato, E, Liu, M.-C, Sakakibara, Y, Suiko, M, Kimura, M, Kakuta, Y.
Deposit date:2010-10-09
Release date:2011-10-26
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Crystal structure of human tyrosylprotein sulfotransferase-2: Insights into substrate-binding and catalysis of post-translational protein tyrosine sulfation
To be Published
3AP3
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BU of 3ap3 by Molmil
Crystal structure of human tyrosylprotein sulfotransferase-2 complexed with PAP
Descriptor: ADENOSINE-3'-5'-DIPHOSPHATE, Protein-tyrosine sulfotransferase 2
Authors:Teramoto, T, Fujikawa, Y, Kawaguchi, Y, Kurogi, K, Soejima, M, Adachi, R, Nakanishi, Y, Mishiro-Sato, E, Liu, M.-C, Sakakibara, Y, Suiko, M, Kimura, M, Kakuta, Y.
Deposit date:2010-10-09
Release date:2011-10-26
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (3.5 Å)
Cite:Crystal structure of human tyrosylprotein sulfotransferase-2 reveals the mechanism of protein tyrosine sulfation reaction.
Nat Commun, 4, 2013
3AP1
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BU of 3ap1 by Molmil
Crystal structure of human tyrosylprotein sulfotransferase-2 complexed with PAP and C4 peptide
Descriptor: ADENOSINE-3'-5'-DIPHOSPHATE, C4 peptide, GLYCEROL, ...
Authors:Teramoto, T, Fujikawa, Y, Kawaguchi, Y, Kurogi, K, Soejima, M, Adachi, R, Nakanishi, Y, Mishiro-Sato, E, Liu, M.-C, Sakakibara, Y, Suiko, M, Kimura, M, Kakuta, Y.
Deposit date:2010-10-09
Release date:2011-10-26
Last modified:2013-03-27
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal structure of human tyrosylprotein sulfotransferase-2 reveals the mechanism of protein tyrosine sulfation reaction.
Nat Commun, 4, 2013
6A7X
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BU of 6a7x by Molmil
Rat Xanthine oxidoreductase, D428A variant, NAD bound form
Descriptor: BICARBONATE ION, FE2/S2 (INORGANIC) CLUSTER, FLAVIN-ADENINE DINUCLEOTIDE, ...
Authors:Okamoto, K, Kawaguchi, Y.
Deposit date:2018-07-05
Release date:2019-07-24
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Rat Xanthine oxidoreductase, D428A variant, NAD bound form
To Be Published
6ADJ
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BU of 6adj by Molmil
Rat Xanthine oxidoreductase, D428E variant
Descriptor: CALCIUM ION, FE2/S2 (INORGANIC) CLUSTER, FLAVIN-ADENINE DINUCLEOTIDE, ...
Authors:Okamoto, K, Kawaguchi, Y.
Deposit date:2018-08-01
Release date:2019-08-07
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (2.18 Å)
Cite:Rat Xanthine oxidoreductase, D428A variant, NAD bound form
To Be Published
6AC1
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BU of 6ac1 by Molmil
Rat Xanthine oxidoreductase, NADH bound form
Descriptor: 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE, BICARBONATE ION, FE2/S2 (INORGANIC) CLUSTER, ...
Authors:Okamoto, K, Kawaguchi, Y.
Deposit date:2018-07-24
Release date:2019-07-31
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.77 Å)
Cite:Rat Xanthine oxidoreductase, D428A variant, NAD bound form
To Be Published
6AC4
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BU of 6ac4 by Molmil
Rat Xanthine oxidoreductase, D428N variant
Descriptor: FE2/S2 (INORGANIC) CLUSTER, FLAVIN-ADENINE DINUCLEOTIDE, Xanthine dehydrogenase/oxidase
Authors:Okamoto, K, Kawaguchi, Y.
Deposit date:2018-07-25
Release date:2019-08-28
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.19 Å)
Cite:Rat Xanthine oxidoreductase, D428A variant, NAD bound form
To Be Published
6AD4
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BU of 6ad4 by Molmil
Rat Xanthine oxidoreductase, D428A variant, NADH bound form
Descriptor: 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE, BICARBONATE ION, FE2/S2 (INORGANIC) CLUSTER, ...
Authors:Okamoto, K, Kawaguchi, Y.
Deposit date:2018-07-30
Release date:2019-07-31
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Rat Xanthine oxidoreductase, D428A variant, NAD bound form
To Be Published
6AJU
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BU of 6aju by Molmil
Rat Xanthine oxidoreductase
Descriptor: BICARBONATE ION, FE2/S2 (INORGANIC) CLUSTER, FLAVIN-ADENINE DINUCLEOTIDE, ...
Authors:Okamoto, K, Kawaguchi, Y.
Deposit date:2018-08-28
Release date:2019-09-11
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.94 Å)
Cite:Rat Xanthine oxidoreductase, D428A variant, NAD bound form
To Be Published
1WYG
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BU of 1wyg by Molmil
Crystal Structure of a Rat Xanthine Dehydrogenase Triple Mutant (C535A, C992R and C1324S)
Descriptor: 2-HYDROXYBENZOIC ACID, ACETIC ACID, CALCIUM ION, ...
Authors:Nishino, T, Okamoto, K, Kawaguchi, Y, Hori, H, Matsumura, T, Eger, B.T, Pai, E.F, Nishino, T.
Deposit date:2005-02-14
Release date:2005-05-31
Last modified:2021-11-10
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Mechanism of the Conversion of Xanthine Dehydrogenase to Xanthine Oxidase: IDENTIFICATION OF THE TWO CYSTEINE DISULFIDE BONDS AND CRYSTAL STRUCTURE OF A NON-CONVERTIBLE RAT LIVER XANTHINE DEHYDROGENASE MUTANT
J.Biol.Chem., 280, 2005
3AN1
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BU of 3an1 by Molmil
Crystal structure of rat D428A mutant, urate bound form
Descriptor: BICARBONATE ION, CALCIUM ION, FE2/S2 (INORGANIC) CLUSTER, ...
Authors:Okamoto, K, Kawaguchi, Y, Eger, B.T, Pai, E.F, Nishino, T.
Deposit date:2010-08-27
Release date:2010-12-01
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.73 Å)
Cite:Crystal Structures of Urate Bound Form of Xanthine Oxidoreductase: Substrate Orientation and Structure of the Key Reaction Intermediate
J.Am.Chem.Soc., 132, 2010

 

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PDB entries from 2024-03-27

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