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6IU3
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CRYSTAL STRUCTURE OF IRON TRANSPORTER VIT1 WITH ZINC IONS
Descriptor:VIT1, (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, ZINC ION
Authors:Kato, T., Nishizawa, T., Yamashita, K., Taniguchi, R., Kumazaki, K., Ishitani, R., Nureki, O.
Deposit date:2018-11-27
Release date:2019-02-06
Last modified:2019-03-20
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Crystal structure of plant vacuolar iron transporter VIT1.
Nat Plants, 5, 2019
6IU4
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CRYSTAL STRUCTURE OF IRON TRANSPORTER VIT1 WITH COBALT ION
Descriptor:VIT1, ZINC ION, COBALT (II) ION
Authors:Kato, T., Nishizawa, T., Yamashita, K., Taniguchi, R., Kumazaki, K., Ishitani, R., Nureki, O.
Deposit date:2018-11-27
Release date:2019-02-06
Last modified:2019-03-20
Method:X-RAY DIFFRACTION (3.5 Å)
Cite:Crystal structure of plant vacuolar iron transporter VIT1.
Nat Plants, 5, 2019
6IU5
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CRYSTAL STRUCTURE OF CYTOPLASMIC METAL BINDING DOMAIN WITH ZINC IONS
Descriptor:VIT1, ZINC ION, CHLORIDE ION
Authors:Kato, T., Nishizawa, T., Yamashita, K., Kumazaki, K., Ishitani, R., Nureki, O.
Deposit date:2018-11-27
Release date:2019-02-06
Last modified:2019-03-27
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Crystal structure of plant vacuolar iron transporter VIT1.
Nat Plants, 5, 2019
6IU6
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CRYSTAL STRUCTURE OF CYTOPLASMIC METAL BINDING DOMAIN WITH NICKEL IONS
Descriptor:VIT1, ZINC ION, NICKEL (II) ION
Authors:Kato, T., Nishizawa, T., Yamashita, K., Kumazaki, K., Ishitani, R., Nureki, O.
Deposit date:2018-11-27
Release date:2019-02-06
Last modified:2019-03-27
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Crystal structure of plant vacuolar iron transporter VIT1.
Nat Plants, 5, 2019
6IU8
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CRYSTAL STRUCTURE OF CYTOPLASMIC METAL BINDING DOMAIN WITH COBALT IONS
Descriptor:VIT1, ZINC ION, COBALT (II) ION
Authors:Kato, T., Nishizawa, T., Yamashita, K., Kumazaki, K., Ishitani, R., Nureki, O.
Deposit date:2018-11-27
Release date:2019-02-06
Last modified:2019-03-27
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Crystal structure of plant vacuolar iron transporter VIT1.
Nat Plants, 5, 2019
6IU9
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CRYSTAL STRUCTURE OF CYTOPLASMIC METAL BINDING DOMAIN WITH IRON IONS
Descriptor:VIT1, ZINC ION, FE (II) ION
Authors:Kato, T., Nishizawa, T., Yamashita, K., Kumazaki, K., Ishitani, R., Nureki, O.
Deposit date:2018-11-27
Release date:2019-02-06
Last modified:2019-03-27
Method:X-RAY DIFFRACTION (3 Å)
Cite:Crystal structure of plant vacuolar iron transporter VIT1.
Nat Plants, 5, 2019
1V7M
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HUMAN THROMBOPOIETIN FUNCTIONAL DOMAIN COMPLEXED TO NEUTRALIZING ANTIBODY TN1 FAB
Descriptor:Monoclonal TN1 Fab Light Chain, Monoclonal TN1 Fab Heavy Chain, Thrombopoietin
Authors:Feese, M.D., Tamada, T., Kato, Y., Maeda, Y., Hirose, M., Matsukura, Y., Shigematsu, H., Kato, T., Miyazaki, H., Kuroki, R.
Deposit date:2003-12-18
Release date:2004-03-02
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.51 Å)
Cite:Structure of the receptor-binding domain of human thrombopoietin determined by complexation with a neutralizing antibody fragment
Proc.Natl.Acad.Sci.USA, 101, 2004
1V7N
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HUMAN THROMBOPOIETIN FUNCTIONAL DOMAIN COMPLEXED TO NEUTRALIZING ANTIBODY TN1 FAB
Descriptor:Monoclonal TN1 Fab Light Chain, Monoclonal TN1 Fab Heavy Chain, Thrombopoietin
Authors:Feese, M.D., Tamada, T., Kato, Y., Maeda, Y., Hirose, M., Matsukura, Y., Shigematsu, H., Kato, T., Miyazaki, H., Kuroki, R.
Deposit date:2003-12-18
Release date:2004-03-02
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:Structure of the receptor-binding domain of human thrombopoietin determined by complexation with a neutralizing antibody fragment
Proc.Natl.Acad.Sci.USA, 101, 2004
6O97
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CRYSTAL STRUCTURE OF THE THERMUS THERMOPHILUS 70S RIBOSOME IN COMPLEX WITH PROPYLAMYCIN AND BOUND TO MRNA AND A-, P-, AND E-SITE TRNAS AT 2.75A RESOLUTION
Descriptor:23S Ribosomal RNA, 5S Ribosomal RNA, 50S ribosomal protein L2, ...
Authors:Matsushita, T., Sati, G.C., Kondasinghe, N., Pirrone, M.G., Kato, T., Waduge, P., Kumar, H.S., Sanchon, A.C., Dobosz-Bartoszek, M., Shcherbakov, D., Juhas, M., Hobbie, S.N., Schrepfer, T., Chow, C.S., Polikanov, Y.S., Schacht, J., Vasella, A., Bottger, E.C., Crich, D.
Deposit date:2019-03-13
Release date:2019-04-17
Last modified:2019-04-24
Method:X-RAY DIFFRACTION (2.75 Å)
Cite:Design, Multigram Synthesis, and in Vitro and in Vivo Evaluation of Propylamycin: A Semisynthetic 4,5-Deoxystreptamine Class Aminoglycoside for the Treatment of Drug-Resistant Enterobacteriaceae and Other Gram-Negative Pathogens.
J. Am. Chem. Soc., 141, 2019
1RCH
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SOLUTION NMR STRUCTURE OF RIBONUCLEASE HI FROM ESCHERICHIA COLI, 8 STRUCTURES
Descriptor:RIBONUCLEASE HI
Authors:Yamazaki, T., Fujiwara, M., Kato, T., Yamasaki, K., Nagayama, K.
Deposit date:1995-06-23
Release date:1997-02-12
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution Structure of Ribonuclease Hi from Escherichia Coli
Biol.Pharm.Bull., 23, 2000
3A69
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ATOMIC MODEL OF THE BACTERIAL FLAGELLAR HOOK BASED ON DOCKING AN X-RAY DERIVED STRUCTURE AND TERMINAL TWO ALPHA-HELICES INTO AN 7.1 ANGSTROM RESOLUTION CRYOEM MAP
Descriptor:Flagellar hook protein flgE
Authors:Fujii, T., Kato, T., Namba, K.
Deposit date:2009-08-26
Release date:2009-12-15
Last modified:2011-07-13
Method:ELECTRON MICROSCOPY (7.1 Å)
Cite:Specific arrangement of alpha-helical coiled coils in the core domain of the bacterial flagellar hook for the universal joint function
Structure, 17, 2009
3J0R
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MODEL OF A TYPE III SECRETION SYSTEM NEEDLE BASED ON A 7 ANGSTROM RESOLUTION CRYOEM MAP
Descriptor:Protein mxiH
Authors:Fujii, T., Cheung, M., Blanco, A., Kato, T., Blocker, A.J., Namba, K.
Deposit date:2011-11-03
Release date:2012-02-29
Last modified:2012-04-04
Method:ELECTRON MICROSCOPY (7.7 Å)
Cite:Structure of a type III secretion needle at 7-A resolution provides insights into its assembly and signaling mechanisms.
Proc.Natl.Acad.Sci.USA, 109, 2012
4D3E
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TETRAMER OF IPAD, MODIFIED FROM 2J0O, FITTED INTO NEGATIVE STAIN ELECTRON MICROSCOPY RECONSTRUCTION OF THE WILD TYPE TIP COMPLEX FROM THE TYPE III SECRETION SYSTEM OF SHIGELLA FLEXNERI
Descriptor:INVASIN IPAD
Authors:Cheung, M., Shen, D.-K., Makino, F., Kato, T., Roehrich, D., Martinez-Argudo, I., Walker, M.L., Murillo, I., Liu, X., Pain, M., Brown, J., Frazer, G., Mantell, J., Mina, P., Todd, T., Sessions, R.B., Namba, K., Blocker, A.J.
Deposit date:2014-10-21
Release date:2014-12-10
Last modified:2018-01-31
Method:ELECTRON MICROSCOPY (2.12 Å)
Cite:Three-Dimensional Electron Microscopy Reconstruction and Cysteine-Mediated Crosslinking Provide a Model of the T3Ss Needle Tip Complex.
Mol.Microbiol., 95, 2015
1WUH
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THREE-DIMENSIONAL STRUCTURE OF THE NI-A STATE OF [NIFE]HYDROGENASE FROM DESULUFOVIBRIO VULGARIS MIYAZAKI F
Descriptor:Periplasmic [NiFe] hydrogenase small subunit, Periplasmic [NiFe] hydrogenase large subunit, IRON/SULFUR CLUSTER, ...
Authors:Ogata, H., Hirota, S., Nakahara, A., Komori, H., Shibata, N., Kato, T., Kano, K., Higuchi, Y.
Deposit date:2004-12-07
Release date:2005-12-07
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.24 Å)
Cite:Structural basis for the activation process of [NiFe] hydrogenase from D.vulgaris Miyazaki F
To be Published
1WUI
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ULTRA-HIGH RESOLUTION STRUCTURE OF THE NI-A STATE OF [NIFE]HYDROGENASE FROM DESULUFOVIBRIO VULGARIS MIYAZAKI F
Descriptor:Periplasmic [NiFe] hydrogenase small subunit, Periplasmic [NiFe] hydrogenase large subunit, IRON/SULFUR CLUSTER, ...
Authors:Ogata, H., Hirota, S., Nakahara, A., Komori, H., Shibata, N., Kato, T., Kano, K., Higuchi, Y.
Deposit date:2004-12-07
Release date:2005-12-07
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.04 Å)
Cite:Activation process of [NiFe] hydrogenase elucidated by high-resolution X-Ray analyses: conversion of the ready to the unready state
Structure, 13, 2005
1WUJ
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THREE-DIMENSIONAL STRUCTURE OF THE NI-B STATE OF [NIFE]HYDROGENASE FROM DESULUFOVIBRIO VULGARIS MIYAZAKI F
Descriptor:Periplasmic [NiFe] hydrogenase small subunit, Periplasmic [NiFe] hydrogenase large subunit, IRON/SULFUR CLUSTER, ...
Authors:Ogata, H., Hirota, S., Nakahara, A., Komori, H., Shibata, N., Kato, T., Kano, K., Higuchi, Y.
Deposit date:2004-12-07
Release date:2005-12-07
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Activation process of [NiFe] hydrogenase elucidated by high-resolution X-Ray analyses: conversion of the ready to the unready state
Structure, 13, 2005
1WUK
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HIGH RESOLUTION STRUCTURE OF THE OXIDIZED STATE OF [NIFE]HYDROGENASE FROM DESULUFOVIBRIO VULGARIS MIYAZAKI F
Descriptor:Periplasmic [NiFe] hydrogenase small subunit, Periplasmic [NiFe] hydrogenase large subunit, IRON/SULFUR CLUSTER, ...
Authors:Ogata, H., Hirota, S., Nakahara, A., Komori, H., Shibata, N., Kato, T., Kano, K., Higuchi, Y.
Deposit date:2004-12-07
Release date:2005-12-07
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.1 Å)
Cite:Activation process of [NiFe] hydrogenase elucidated by high-resolution X-Ray analyses: conversion of the ready to the unready state
Structure, 13, 2005
1WUL
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HIGH RESOLUTION STRUCTURE OF THE REDUCED STATE OF [NIFE]HYDROGENASE FROM DESULUFOVIBRIO VULGARIS MIYAZAKI F
Descriptor:Periplasmic [NiFe] hydrogenase small subunit, Periplasmic [NiFe] hydrogenase large subunit, IRON/SULFUR CLUSTER, ...
Authors:Ogata, H., Hirota, S., Nakahara, A., Komori, H., Shibata, N., Kato, T., Kano, K., Higuchi, Y.
Deposit date:2004-12-07
Release date:2005-12-07
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Activation process of [NiFe] hydrogenase elucidated by high-resolution X-Ray analyses: conversion of the ready to the unready state
Structure, 13, 2005
3VXV
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CRYSTAL STRUCTURE OF METHYL CPG BINDING DOMAIN OF MBD4 IN COMPLEX WITH THE 5MCG/TG SEQUENCE
Descriptor:Methyl-CpG-binding domain protein 4, DNA (5'-D(*GP*TP*CP*AP*CP*TP*AP*CP*(5CM)P*GP*GP*AP*CP*A)-3'), DNA (5'-D(*GP*TP*CP*TP*GP*GP*TP*AP*GP*TP*GP*AP*CP*T)-3'), ...
Authors:Otani, J., Arita, K., Kato, T., Kinoshita, M., Ariyoshi, M., Shirakawa, M.
Deposit date:2012-09-21
Release date:2013-01-16
Last modified:2013-08-14
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural basis of the versatile DNA recognition ability of the methyl-CpG binding domain of methyl-CpG binding domain protein 4
J.Biol.Chem., 288, 2013
3VXX
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CRYSTAL STRUCTURE OF METHYL CPG BINDING DOMAIN OF MBD4 IN COMPLEX WITH THE 5MCG/5MCG SEQUENCE
Descriptor:Methyl-CpG-binding domain protein 4, DNA (5'-D(*GP*TP*CP*AP*CP*TP*AP*CP*(5CM)P*GP*GP*AP*CP*A)-3'), DNA (5'-D(*GP*TP*CP*(5CM)P*GP*GP*TP*AP*GP*TP*GP*AP*CP*T)-3'), ...
Authors:Otani, J., Arita, K., Kato, T., Kinoshita, M., Ariyoshi, M., Shirakawa, M.
Deposit date:2012-09-21
Release date:2013-01-16
Last modified:2013-08-14
Method:X-RAY DIFFRACTION (2.204 Å)
Cite:Structural basis of the versatile DNA recognition ability of the methyl-CpG binding domain of methyl-CpG binding domain protein 4
J.Biol.Chem., 288, 2013
3VYB
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CRYSTAL STRUCTURE OF METHYL CPG BINDING DOMAIN OF MBD4 IN COMPLEX WITH THE 5MCG/HMCG SEQUENCE
Descriptor:Methyl-CpG-binding domain protein 4, DNA (5'-D(*GP*TP*CP*AP*CP*TP*AP*CP*(5CM)P*GP*GP*AP*CP*A)-3'), DNA (5'-D(*GP*TP*CP*(5HC)P*GP*GP*TP*AP*GP*TP*GP*AP*CP*T)-3'), ...
Authors:Otani, J., Arita, K., Kato, T., Kinoshita, M., Ariyoshi, M., Shirakawa, M.
Deposit date:2012-09-22
Release date:2013-01-16
Last modified:2013-08-14
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structural basis of the versatile DNA recognition ability of the methyl-CpG binding domain of methyl-CpG binding domain protein 4
J.Biol.Chem., 288, 2013
3VYQ
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CRYSTAL STRUCTURE OF THE METHYL CPG BINDING DOMAIN OF MBD4 IN COMPLEX WITH THE 5MCG/TG SEQUENCE IN SPACE GROUP P1
Descriptor:Methyl-CpG-binding domain protein 4, DNA (5'-D(*AP*CP*AP*TP*CP*(5CM)P*GP*GP*TP*GP*A)-3'), DNA (5'-D(*TP*CP*AP*CP*TP*GP*GP*AP*TP*GP*T)-3'), ...
Authors:Otani, J., Arita, K., Kato, T., Kinoshita, M., Ariyoshi, M., Shirakawa, M.
Deposit date:2012-10-02
Release date:2013-01-16
Last modified:2013-08-14
Method:X-RAY DIFFRACTION (2.525 Å)
Cite:Structural basis of the versatile DNA recognition ability of the methyl-CpG binding domain of methyl-CpG binding domain protein 4
J.Biol.Chem., 288, 2013
1IS1
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CRYSTAL STRUCTURE OF RIBOSOME RECYCLING FACTOR FROM VIBRIO PARAHAEMOLYTICUS
Descriptor:RIBOSOME RECYCLING FACTOR
Authors:Nakano, H., Yamaichi, Y., Uchiyama, S., Yoshida, T., Nishina, K., Kato, H., Ohkubo, T., Honda, T., Yamagata, Y., Kobayashi, Y.
Deposit date:2001-11-05
Release date:2003-06-17
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structure and binding mode of a ribosome recycling factor (RRF) from mesophilic bacterium
J.BIOL.CHEM., 278, 2003
1V79
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CRYSTAL STRUCTURES OF ADENOSINE DEAMINASE COMPLEXED WITH POTENT INHIBITORS
Descriptor:Adenosine deaminase, ZINC ION, 1-{(1R,2S)-1-[2-(2,3,-DICHLOROPHENYL)ETHYL]-2-HYDROXYPROPYL}-1H-IMIDAZOLE-4-CARBOXAMIDE
Authors:Kinoshita, T.
Deposit date:2003-12-14
Release date:2004-12-21
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structure-based design and synthesis of non-nucleoside, potent, and orally bioavailable adenosine deaminase inhibitors
J.Med.Chem., 47, 2004
1V7A
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CRYSTAL STRUCTURES OF ADENOSINE DEAMINASE COMPLEXED WITH POTENT INHIBITORS
Descriptor:adenosine deaminase, ZINC ION, 1-{(1R,2S)-2-HYDROXY-1-[2-(2-NAPHTHYLOXY)ETHYL]PROPYL}-1H-IMIDAZONE-4-CARBOXAMIDE
Authors:Kinoshita, T.
Deposit date:2003-12-14
Release date:2004-12-21
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structure-based design and synthesis of non-nucleoside, potent, and orally bioavailable adenosine deaminase inhibitors
J.Med.Chem., 47, 2004
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