Author results

5GQC
  • Download 5gqc
  • View 5gqc
Molmil generated image of 5gqc
CRYSTAL STRUCTURE OF LACTO-N-BIOSIDASE LNBX FROM BIFIDOBACTERIUM LONGUM SUBSP. LONGUM, LIGAND-FREE FORM
Descriptor:Lacto-N-biosidase, SODIUM ION, CALCIUM ION
Authors:Yamada, C., Arakawa, T., Katayama, T., Fushinobu, S.
Deposit date:2016-08-07
Release date:2017-04-19
Last modified:2017-05-03
Method:X-RAY DIFFRACTION (2.36 Å)
Cite:Molecular Insight into Evolution of Symbiosis between Breast-Fed Infants and a Member of the Human Gut Microbiome Bifidobacterium longum
Cell Chem Biol, 24, 2017
5GQF
  • Download 5gqf
  • View 5gqf
Molmil generated image of 5gqf
CRYSTAL STRUCTURE OF LACTO-N-BIOSIDASE LNBX FROM BIFIDOBACTERIUM LONGUM SUBSP. LONGUM, LACTO-N-BIOSE COMPLEX
Descriptor:Lacto-N-biosidase, CALCIUM ION, BETA-D-GALACTOSE, ...
Authors:Yamada, C., Arakawa, T., Katayama, T., Fushinobu, S.
Deposit date:2016-08-07
Release date:2017-04-19
Last modified:2017-10-18
Method:X-RAY DIFFRACTION (1.82 Å)
Cite:Molecular Insight into Evolution of Symbiosis between Breast-Fed Infants and a Member of the Human Gut Microbiome Bifidobacterium longum
Cell Chem Biol, 24, 2017
5GQG
  • Download 5gqg
  • View 5gqg
Molmil generated image of 5gqg
CRYSTAL STRUCTURE OF LACTO-N-BIOSIDASE LNBX FROM BIFIDOBACTERIUM LONGUM SUBSP. LONGUM, GALACTO-N-BIOSE COMPLEX
Descriptor:Lacto-N-biosidase, CALCIUM ION, BETA-D-GALACTOSE, ...
Authors:Yamada, C., Arakawa, T., Katayama, T., Fushinobu, S.
Deposit date:2016-08-07
Release date:2017-04-19
Last modified:2017-10-18
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Molecular Insight into Evolution of Symbiosis between Breast-Fed Infants and a Member of the Human Gut Microbiome Bifidobacterium longum
Cell Chem Biol, 24, 2017
4H04
  • Download 4h04
  • View 4h04
Molmil generated image of 4h04
LACTO-N-BIOSIDASE FROM BIFIDOBACTERIUM BIFIDUM
Descriptor:Lacto-N-biosidase, N-ACETYL-D-GLUCOSAMINE, BETA-D-GALACTOSE, ...
Authors:Ito, T., Katayama, T., Wada, J., Suzuki, R., Ashida, H., Wakagi, T., Yamamoto, K., Fushinobu, S.
Deposit date:2012-09-07
Release date:2013-03-20
Last modified:2013-07-10
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structures of a glycoside hydrolase family 20 lacto-N-biosidase from Bifidobacterium bifidum
J.Biol.Chem., 288, 2013
4JAW
  • Download 4jaw
  • View 4jaw
Molmil generated image of 4jaw
CRYSTAL STRUCTURE OF LACTO-N-BIOSIDASE FROM BIFIDOBACTERIUM BIFIDUM COMPLEXED WITH LNB-THIAZOLINE
Descriptor:Lacto-N-biosidase, BETA-D-GALACTOSE, 3AR,5R,6S,7R,7AR-5-HYDROXYMETHYL-2-METHYL-5,6,7,7A-TETRAHYDRO-3AH-PYRANO[3,2-D]THIAZOLE-6,7-DIOL, ...
Authors:Ito, T., Katayama, T., Stubbs, K.A., Fushinobu, S.
Deposit date:2013-02-19
Release date:2013-03-20
Last modified:2013-07-10
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structures of a glycoside hydrolase family 20 lacto-N-biosidase from Bifidobacterium bifidum
J.Biol.Chem., 288, 2013
2Z8D
  • Download 2z8d
  • View 2z8d
Molmil generated image of 2z8d
THE GALACTO-N-BIOSE-/LACTO-N-BIOSE I-BINDING PROTEIN (GL-BP) OF THE ABC TRANSPORTER FROM BIFIDOBACTERIUM LONGUM IN COMPLEX WITH LACTO-N-BIOSE
Descriptor:Galacto-N-biose/lacto-N-biose I transporter substrate-binding protein, BETA-D-GALACTOSE, N-ACETYL-D-GLUCOSAMINE, ...
Authors:Suzuki, R., Wada, J., Katayama, T., Fushinobu, S.
Deposit date:2007-09-05
Release date:2008-03-18
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Structural and thermodynamic analyses of solute-binding Protein from Bifidobacterium longum specific for core 1 disaccharide and lacto-N-biose I.
J.Biol.Chem., 283, 2008
2Z8E
  • Download 2z8e
  • View 2z8e
Molmil generated image of 2z8e
THE GALACTO-N-BIOSE-/LACTO-N-BIOSE I-BINDING PROTEIN (GL-BP) OF THE ABC TRANSPORTER FROM BIFIDOBACTERIUM LONGUM IN COMPLEX WITH GALACTO-N-BIOSE
Descriptor:Galacto-N-biose/lacto-N-biose I transporter substrate-binding protein, BETA-D-GALACTOSE, N-ACETYL-D-GALACTOSAMINE, ...
Authors:Suzuki, R., Wada, J., Katayama, T., Fushinobu, S.
Deposit date:2007-09-05
Release date:2008-03-18
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.99 Å)
Cite:Structural and thermodynamic analyses of solute-binding Protein from Bifidobacterium longum specific for core 1 disaccharide and lacto-N-biose I.
J.Biol.Chem., 283, 2008
2Z8F
  • Download 2z8f
  • View 2z8f
Molmil generated image of 2z8f
THE GALACTO-N-BIOSE-/LACTO-N-BIOSE I-BINDING PROTEIN (GL-BP) OF THE ABC TRANSPORTER FROM BIFIDOBACTERIUM LONGUM IN COMPLEX WITH LACTO-N-TETRAOSE
Descriptor:Galacto-N-biose/lacto-N-biose I transporter substrate-binding protein, BETA-D-GALACTOSE, N-ACETYL-D-GLUCOSAMINE, ...
Authors:Suzuki, R., Wada, J., Katayama, T., Fushinobu, S.
Deposit date:2007-09-05
Release date:2008-03-18
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Structural and thermodynamic analyses of solute-binding Protein from Bifidobacterium longum specific for core 1 disaccharide and lacto-N-biose I.
J.Biol.Chem., 283, 2008
3ABZ
  • Download 3abz
  • View 3abz
Molmil generated image of 3abz
CRYSTAL STRUCTURE OF SE-MET LABELED BETA-GLUCOSIDASE FROM KLUYVEROMYCES MARXIANUS
Descriptor:Beta-glucosidase I, GLYCEROL
Authors:Yoshida, E., Hidaka, M., Fushinobu, S., Katayama, T., Kumagai, H.
Deposit date:2009-12-25
Release date:2010-08-11
Last modified:2013-10-30
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Role of a PA14 domain in determining substrate specificity of a glycoside hydrolase family 3 beta-glucosidase from Kluyveromyces marxianus.
Biochem.J., 431, 2010
3AC0
  • Download 3ac0
  • View 3ac0
Molmil generated image of 3ac0
CRYSTAL STRUCTURE OF BETA-GLUCOSIDASE FROM KLUYVEROMYCES MARXIANUS IN COMPLEX WITH GLUCOSE
Descriptor:Beta-glucosidase I, BETA-D-GLUCOSE
Authors:Yoshida, E., Hidaka, M., Fushinobu, S., Katayama, T., Kumagai, H.
Deposit date:2009-12-25
Release date:2010-08-11
Last modified:2013-10-30
Method:X-RAY DIFFRACTION (2.54 Å)
Cite:Role of a PA14 domain in determining substrate specificity of a glycoside hydrolase family 3 beta-glucosidase from Kluyveromyces marxianus.
Biochem.J., 431, 2010
3AHC
  • Download 3ahc
  • View 3ahc
Molmil generated image of 3ahc
RESTING FORM OF PHOSPHOKETOLASE FROM BIFIDOBACTERIUM BREVE
Descriptor:Xylulose 5-phosphate/fructose 6-phosphate phosphoketolase, MAGNESIUM ION, THIAMINE DIPHOSPHATE, ...
Authors:Suzuki, R., Katayama, T., Kim, B.-J., Wakagi, T., Shoun, H., Ashida, H., Yamamoto, K., Fushinobu, S.
Deposit date:2010-04-22
Release date:2010-08-25
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystal Structures of phosphoketolase: thiamine diphosphate-dependent dehydration mechanism
J.Biol.Chem., 285, 2010
3AHD
  • Download 3ahd
  • View 3ahd
Molmil generated image of 3ahd
PHOSPHOKETOLASE FROM BIFIDOBACTERIUM BREVE COMPLEXED WITH 2-ACETYL-THIAMINE DIPHOSPHATE
Descriptor:Xylulose 5-phosphate/fructose 6-phosphate phosphoketolase, MAGNESIUM ION, 2-ACETYL-THIAMINE DIPHOSPHATE, ...
Authors:Suzuki, R., Katayama, T., Kim, B.-J., Wakagi, T., Shoun, H., Ashida, H., Yamamoto, K., Fushinobu, S.
Deposit date:2010-04-22
Release date:2010-08-25
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal Structures of phosphoketolase: thiamine diphosphate-dependent dehydration mechanism
J.Biol.Chem., 285, 2010
3AHE
  • Download 3ahe
  • View 3ahe
Molmil generated image of 3ahe
PHOSPHOKETOLASE FROM BIFIDOBACTERIUM BREVE COMPLEXED WITH DIHYDROXYETHYL THIAMINE DIPHOSPHATE
Descriptor:Xylulose 5-phosphate/fructose 6-phosphate phosphoketolase, MAGNESIUM ION, 2-[3-[(4-AMINO-2-METHYL-5-PYRIMIDINYL)METHYL]-2-(1,2-DIHYDROXYETHYL)-4-METHYL-1,3-THIAZOL-3-IUM-5-YL]ETHYL TRIHYDROGEN DIPHOSPHATE, ...
Authors:Suzuki, R., Katayama, T., Kim, B.-J., Wakagi, T., Shoun, H., Ashida, H., Yamamoto, K., Fushinobu, S.
Deposit date:2010-04-22
Release date:2010-08-25
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal Structures of phosphoketolase: thiamine diphosphate-dependent dehydration mechanism
J.Biol.Chem., 285, 2010
3AHF
  • Download 3ahf
  • View 3ahf
Molmil generated image of 3ahf
PHOSPHOKETOLASE FROM BIFIDOBACTERIUM BREVE COMPLEXED WITH INORGANIC PHOSPHATE
Descriptor:Xylulose 5-phosphate/fructose 6-phosphate phosphoketolase, THIAMINE DIPHOSPHATE, MAGNESIUM ION, ...
Authors:Suzuki, R., Katayama, T., Kim, B.-J., Wakagi, T., Shoun, H., Ashida, H., Yamamoto, K., Fushinobu, S.
Deposit date:2010-04-22
Release date:2010-08-25
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal Structures of phosphoketolase: thiamine diphosphate-dependent dehydration mechanism
J.Biol.Chem., 285, 2010
3AHG
  • Download 3ahg
  • View 3ahg
Molmil generated image of 3ahg
H64A MUTANT OF PHOSPHOKETOLASE FROM BIFIDOBACTERIUM BREVE COMPLEXED WITH A TRICYCLIC RING FORM OF THIAMINE DIPHOSPHATE
Descriptor:Xylulose 5-phosphate/fructose 6-phosphate phosphoketolase, MAGNESIUM ION, 2-[(9aR)-2,7-dimethyl-9a,10-dihydro-5H-pyrimido[4,5-d][1,3]thiazolo[3,2-a]pyrimidin-8-yl]ethyl trihydrogen diphosphate, ...
Authors:Suzuki, R., Katayama, T., Kim, B.-J., Wakagi, T., Shoun, H., Ashida, H., Yamamoto, K., Fushinobu, S.
Deposit date:2010-04-22
Release date:2010-08-25
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal Structures of phosphoketolase: thiamine diphosphate-dependent dehydration mechanism
J.Biol.Chem., 285, 2010
3AHH
  • Download 3ahh
  • View 3ahh
Molmil generated image of 3ahh
H142A MUTANT OF PHOSPHOKETOLASE FROM BIFIDOBACTERIUM BREVE COMPLEXED WITH ACETYL THIAMINE DIPHOSPHATE
Descriptor:Xylulose 5-phosphate/fructose 6-phosphate phosphoketolase, MAGNESIUM ION, 2-ACETYL-THIAMINE DIPHOSPHATE, ...
Authors:Suzuki, R., Katayama, T., Kim, B.-J., Wakagi, T., Shoun, H., Ashida, H., Yamamoto, K., Fushinobu, S.
Deposit date:2010-04-22
Release date:2010-08-25
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal Structures of phosphoketolase: thiamine diphosphate-dependent dehydration mechanism
J.Biol.Chem., 285, 2010
3AHI
  • Download 3ahi
  • View 3ahi
Molmil generated image of 3ahi
H320A MUTANT OF PHOSPHOKETOLASE FROM BIFIDOBACTERIUM BREVE COMPLEXED WITH ACETYL THIAMINE DIPHOSPHATE
Descriptor:Xylulose 5-phosphate/fructose 6-phosphate phosphoketolase, MAGNESIUM ION, 2-ACETYL-THIAMINE DIPHOSPHATE, ...
Authors:Suzuki, R., Katayama, T., Kim, B.-J., Wakagi, T., Shoun, H., Ashida, H., Yamamoto, K., Fushinobu, S.
Deposit date:2010-04-22
Release date:2010-08-25
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal Structures of phosphoketolase: thiamine diphosphate-dependent dehydration mechanism
J.Biol.Chem., 285, 2010
3AHJ
  • Download 3ahj
  • View 3ahj
Molmil generated image of 3ahj
H553A MUTANT OF PHOSPHOKETOLASE FROM BIFIDOBACTERIUM BREVE
Descriptor:Xylulose 5-phosphate/fructose 6-phosphate phosphoketolase, MAGNESIUM ION, THIAMINE DIPHOSPHATE, ...
Authors:Suzuki, R., Katayama, T., Kim, B.-J., Wakagi, T., Shoun, H., Ashida, H., Yamamoto, K., Fushinobu, S.
Deposit date:2010-04-22
Release date:2010-08-25
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal Structures of phosphoketolase: thiamine diphosphate-dependent dehydration mechanism
J.Biol.Chem., 285, 2010
2ZXQ
  • Download 2zxq
  • View 2zxq
Molmil generated image of 2zxq
CRYSTAL STRUCTURE OF ENDO-ALPHA-N-ACETYLGALACTOSAMINIDASE FROM BIFIDOBACTERIUM LONGUM (ENGBF)
Descriptor:Endo-alpha-N-acetylgalactosaminidase, MANGANESE (II) ION, (4S)-2-METHYL-2,4-PENTANEDIOL
Authors:Suzuki, R., Katayama, T., Ashida, H., Yamamoto, K., Kitaoka, M., Fushinobu, S.
Deposit date:2009-01-05
Release date:2009-06-16
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystallographic and mutational analyses of substrate recognition of endo-{alpha}-N-acetylgalactosaminidase from Bifidobacterium longum.
J.Biochem., 2009
1WOC
  • Download 1woc
  • View 1woc
Molmil generated image of 1woc
CRYSTAL STRUCTURE OF PRIB
Descriptor:Primosomal replication protein n
Authors:Shioi, S., Ose, T., Maenaka, K., Abe, Y., Kohda, D., Katayama, T., Ueda, T.
Deposit date:2004-08-13
Release date:2005-01-25
Last modified:2012-12-05
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of a biologically functional form of PriB from Escherichia coli reveals a potential single-stranded DNA-binding site
Biochem.Biophys.Res.Commun., 326, 2005
2E0G
  • Download 2e0g
  • View 2e0g
Molmil generated image of 2e0g
DNAA N-TERMINAL DOMAIN
Descriptor:Chromosomal replication initiator protein dnaA
Authors:Abe, Y., Katayama, T., Ueda, T., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2006-10-07
Release date:2007-05-01
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Structure and Function of DnaA N-Terminal Domains: Specific Sites and Mechanisms in Inter-DnaA Interaction and in DnaB Helicase Loading on oriC
To be Published
2RT6
  • Download 2rt6
  • View 2rt6
Molmil generated image of 2rt6
BACKBONE 1H, 13C, AND 15N CHEMICAL SHIFT ASSIGNMENTS FOR PRIC N-TERMINAL DOMAIN
Descriptor:Primosomal replication protein N''
Authors:Aramaki, T., Abe, Y., Katayama, T., Ueda, T.
Deposit date:2013-04-24
Release date:2013-08-07
Method:SOLUTION NMR
Cite:Solution structure of the N-terminal domain of a replication restart primosome factor, PriC, in Escherichia coli.
Protein Sci., 2013
2RU8
  • Download 2ru8
  • View 2ru8
Molmil generated image of 2ru8
DNAT C-TERMINAL DOMAIN
Descriptor:Primosomal protein 1
Authors:Abe, Y., Tani, J., Fujiyama, S., Urabe, M., Sato, K., Aramaki, T., Katayama, T., Ueda, T.
Deposit date:2014-01-29
Release date:2014-10-08
Last modified:2014-10-22
Method:SOLUTION NMR
Cite:Structure and mechanism of the primosome protein DnaT: functional structures for homotrimerization, dissociation of ssDNA from PriB-ssDNA complex and formation of DnaT-ssDNA complex
Febs J., 2014
1J1V
  • Download 1j1v
  • View 1j1v
Molmil generated image of 1j1v
CRYSTAL STRUCTURE OF DNAA DOMAINIV COMPLEXED WITH DNAABOX DNA
Descriptor:5'-D(*TP*GP*TP*TP*AP*TP*CP*CP*AP*CP*AP*GP*G)-3', 5'-D(*CP*CP*TP*GP*TP*GP*GP*AP*TP*AP*AP*CP*A)-3', Chromosomal replication initiator protein dnaA
Authors:Fujikawa, N., Kurumizaka, H., Nureki, O., Terada, T., Shirouzu, M., Katayama, T., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2002-12-18
Release date:2003-04-22
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structural basis of replication origin recognition by the DnaA protein
NUCLEIC ACIDS RES., 31, 2003
2D35
  • Download 2d35
  • View 2d35
Molmil generated image of 2d35
SOLUTION STRUCTURE OF CELL DIVISION REACTIVATION FACTOR, CEDA
Descriptor:Cell division activator cedA
Authors:Abe, Y., Watanabe, N., Matsuda, Y., Yoshida, Y., Katayama, T., Ueda, T.
Deposit date:2005-09-26
Release date:2006-12-12
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Structural Analysis and Molecular Interaction of Cell Division Reactivation Factor, CedA from Escherichia coli
To be Published
<12>