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7FJK
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BU of 7fjk by Molmil
Tyrosine phenol-lyase from pantoea agglomerans
Descriptor: 1,2-ETHANEDIOL, CITRIC ACID, DI(HYDROXYETHYL)ETHER, ...
Authors:Katayama, T, Mikamii, B, Byun, Z.
Deposit date:2021-08-04
Release date:2022-08-10
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Faecal microbiota-dependent phenol production from tyrosine
To Be Published
4H04
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BU of 4h04 by Molmil
Lacto-N-biosidase from Bifidobacterium bifidum
Descriptor: Lacto-N-biosidase, SULFATE ION, beta-D-galactopyranose-(1-3)-2-acetamido-2-deoxy-beta-D-glucopyranose
Authors:Ito, T, Katayama, T, Wada, J, Suzuki, R, Ashida, H, Wakagi, T, Yamamoto, K, Fushinobu, S.
Deposit date:2012-09-07
Release date:2013-03-20
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structures of a glycoside hydrolase family 20 lacto-N-biosidase from Bifidobacterium bifidum
J.Biol.Chem., 288, 2013
4JAW
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BU of 4jaw by Molmil
Crystal Structure of Lacto-N-Biosidase from Bifidobacterium bifidum complexed with LNB-thiazoline
Descriptor: 3AR,5R,6S,7R,7AR-5-HYDROXYMETHYL-2-METHYL-5,6,7,7A-TETRAHYDRO-3AH-PYRANO[3,2-D]THIAZOLE-6,7-DIOL, Lacto-N-biosidase, SULFATE ION, ...
Authors:Ito, T, Katayama, T, Stubbs, K.A, Fushinobu, S.
Deposit date:2013-02-19
Release date:2013-03-20
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structures of a glycoside hydrolase family 20 lacto-N-biosidase from Bifidobacterium bifidum
J.Biol.Chem., 288, 2013
1C7G
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BU of 1c7g by Molmil
TYROSINE PHENOL-LYASE FROM ERWINIA HERBICOLA
Descriptor: PYRIDOXAL-5'-PHOSPHATE, TYROSINE PHENOL-LYASE
Authors:Mikami, B, Yamamoto, Y, Katayama, T, Suzuki, H.
Deposit date:2000-02-18
Release date:2003-12-09
Last modified:2023-08-09
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:The Structure of Tyrosine Phenol-Lyase from Erwinia Herbicola
To be Published
5GQC
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BU of 5gqc by Molmil
Crystal structure of lacto-N-biosidase LnbX from Bifidobacterium longum subsp. longum, ligand-free form
Descriptor: CALCIUM ION, Lacto-N-biosidase, SODIUM ION
Authors:Yamada, C, Arakawa, T, Katayama, T, Fushinobu, S.
Deposit date:2016-08-07
Release date:2017-04-19
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.36 Å)
Cite:Molecular Insight into Evolution of Symbiosis between Breast-Fed Infants and a Member of the Human Gut Microbiome Bifidobacterium longum
Cell Chem Biol, 24, 2017
5GQG
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BU of 5gqg by Molmil
Crystal structure of lacto-N-biosidase LnbX from Bifidobacterium longum subsp. longum, galacto-N-biose complex
Descriptor: CALCIUM ION, Lacto-N-biosidase, beta-D-galactopyranose-(1-3)-2-acetamido-2-deoxy-beta-D-galactopyranose
Authors:Yamada, C, Arakawa, T, Katayama, T, Fushinobu, S.
Deposit date:2016-08-07
Release date:2017-04-19
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Molecular Insight into Evolution of Symbiosis between Breast-Fed Infants and a Member of the Human Gut Microbiome Bifidobacterium longum
Cell Chem Biol, 24, 2017
5GQF
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BU of 5gqf by Molmil
Crystal structure of lacto-N-biosidase LnbX from Bifidobacterium longum subsp. longum, lacto-N-biose complex
Descriptor: CALCIUM ION, Lacto-N-biosidase, beta-D-galactopyranose-(1-3)-2-acetamido-2-deoxy-beta-D-glucopyranose
Authors:Yamada, C, Arakawa, T, Katayama, T, Fushinobu, S.
Deposit date:2016-08-07
Release date:2017-04-19
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.82 Å)
Cite:Molecular Insight into Evolution of Symbiosis between Breast-Fed Infants and a Member of the Human Gut Microbiome Bifidobacterium longum
Cell Chem Biol, 24, 2017
2RU8
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BU of 2ru8 by Molmil
DnaT C-terminal domain
Descriptor: Primosomal protein 1
Authors:Abe, Y, Tani, J, Fujiyama, S, Urabe, M, Sato, K, Aramaki, T, Katayama, T, Ueda, T.
Deposit date:2014-01-29
Release date:2014-10-08
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Structure and mechanism of the primosome protein DnaT-functional structures for homotrimerization, dissociation of ssDNA from the PriB·ssDNA complex, and formation of the DnaT·ssDNA complex.
Febs J., 281, 2014
6KZA
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BU of 6kza by Molmil
Crystal structure of the complex of the interaction domains of E. coli DnaB helicase and DnaC helicase loader
Descriptor: DNA replication protein DnaC, Replicative DNA helicase
Authors:Nagata, K, Okada, A, Ohtsuka, J, Ohkuri, T, Akama, Y, Sakiyama, Y, Miyazaki, E, Horita, S, Katayama, T, Ueda, T, Tanokura, M.
Deposit date:2019-09-23
Release date:2019-11-20
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Crystal structure of the complex of the interaction domains of Escherichia coli DnaB helicase and DnaC helicase loader: structural basis implying a distortion-accumulation mechanism for the DnaB ring opening caused by DnaC binding.
J.Biochem., 167, 2020
2RT6
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BU of 2rt6 by Molmil
Backbone 1H, 13C, and 15N Chemical Shift Assignments for PriC N-terminal domain
Descriptor: Primosomal replication protein N''
Authors:Aramaki, T, Abe, Y, Katayama, T, Ueda, T.
Deposit date:2013-04-24
Release date:2013-08-07
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Solution structure of the N-terminal domain of a replication restart primosome factor, PriC, in Escherichia coli.
Protein Sci., 22, 2013
4UNI
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BU of 4uni by Molmil
beta-(1,6)-galactosidase from Bifidobacterium animalis subsp. lactis Bl-04 in complex with galactose
Descriptor: BETA-GALACTOSIDASE, DI(HYDROXYETHYL)ETHER, GLYCEROL, ...
Authors:Viborg, A.H, Fredslund, F, Katayama, T, Nielsen, S.K, Svensson, B, Kitaoka, M, Lo Leggio, L, Abou Hachem, M.
Deposit date:2014-05-28
Release date:2014-10-15
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:A beta 1-6/ beta 1-3 galactosidase from Bifidobacterium animalis subsp. lactis Bl-04 gives insight into sub-specificities of beta-galactoside catabolism within Bifidobacterium.
Mol. Microbiol., 2014
4UOQ
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BU of 4uoq by Molmil
Nucleophile mutant (E324A) of beta-(1,6)-galactosidase from Bifidobacterium animalis subsp. lactis Bl-04
Descriptor: BETA-GALACTOSIDASE, DI(HYDROXYETHYL)ETHER, TETRAETHYLENE GLYCOL, ...
Authors:Viborg, A.H, Fredslund, F, Katayama, T, Nielsen, S.K, Svensson, B, Kitaoka, M, Lo Leggio, L, Abou Hachem, M.
Deposit date:2014-06-09
Release date:2014-10-22
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:A beta 1-6/ beta 1-3 galactosidase from Bifidobacterium animalis subsp. lactis Bl-04 gives insight into sub-specificities of beta-galactoside catabolism within Bifidobacterium.
Mol. Microbiol., 2014
4UOZ
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BU of 4uoz by Molmil
beta-(1,6)-galactosidase from Bifidobacterium animalis subsp. lactis Bl-04 nucleophile mutant E324A in complex with galactose
Descriptor: BETA-GALACTOSIDASE, TRIETHYLENE GLYCOL, ZINC ION, ...
Authors:Viborg, A.H, Fredslund, F, Katayama, T, Nielsen, S.K, Svensson, B, Kitaoka, M, Lo Leggio, L, Abou Hachem, M.
Deposit date:2014-06-11
Release date:2014-10-15
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:A beta 1-6/ beta 1-3 galactosidase from Bifidobacterium animalis subsp. lactis Bl-04 gives insight into sub-specificities of beta-galactoside catabolism within Bifidobacterium.
Mol. Microbiol., 2014
6HUR
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BU of 6hur by Molmil
2'-fucosyllactose and 3-fucosyllactose binding protein from Bifidobacterium longum infantis, bound with 2'-fucosyllactose
Descriptor: 2-(2-METHOXYETHOXY)ETHANOL, 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, ABC transporter substrate-binding protein, ...
Authors:Ejby, M, Abou Hachem, M, Lo Leggio, L, Katayama, T, Sakanaka, M.
Deposit date:2018-10-09
Release date:2019-09-04
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (1.297 Å)
Cite:Evolutionary adaptation in fucosyllactose uptake systems supports bifidobacteria-infant symbiosis.
Sci Adv, 5, 2019
7WDT
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BU of 7wdt by Molmil
6-sulfo-beta-D-N-acetylglucosaminidase from Bifidobacterium bifidum in complex with GlcNAc-6S
Descriptor: 2-acetamido-2-deoxy-6-O-sulfo-alpha-D-glucopyranose, 2-acetamido-2-deoxy-6-O-sulfo-beta-D-glucopyranose, Beta-N-acetylhexosaminidase, ...
Authors:Yamada, C, Kashima, T, Fushinobu, S, Katoh, T, Katayama, T.
Deposit date:2021-12-22
Release date:2022-12-28
Last modified:2023-06-14
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:A bacterial sulfoglycosidase highlights mucin O-glycan breakdown in the gut ecosystem.
Nat.Chem.Biol., 19, 2023
7WDU
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BU of 7wdu by Molmil
6-sulfo-beta-D-N-acetylglucosaminidase from Bifidobacterium bifidum in complex with PUGNAc-6S
Descriptor: Beta-N-acetylhexosaminidase, CALCIUM ION, [[(3R,4R,5S,6R)-3-acetamido-4,5-bis(oxidanyl)-6-(sulfooxymethyl)oxan-2-ylidene]amino] N-phenylcarbamate
Authors:Kashima, T, Yamada, C, Fushinobu, S, Katoh, T, Katayama, T.
Deposit date:2021-12-22
Release date:2022-12-28
Last modified:2023-06-14
Method:X-RAY DIFFRACTION (2.23 Å)
Cite:A bacterial sulfoglycosidase highlights mucin O-glycan breakdown in the gut ecosystem.
Nat.Chem.Biol., 19, 2023
3AHG
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BU of 3ahg by Molmil
H64A mutant of Phosphoketolase from Bifidobacterium Breve complexed with a tricyclic ring form of thiamine diphosphate
Descriptor: 1,2-ETHANEDIOL, 2-[(9aR)-2,7-dimethyl-9a,10-dihydro-5H-pyrimido[4,5-d][1,3]thiazolo[3,2-a]pyrimidin-8-yl]ethyl trihydrogen diphosphate, MAGNESIUM ION, ...
Authors:Suzuki, R, Katayama, T, Kim, B.-J, Wakagi, T, Shoun, H, Ashida, H, Yamamoto, K, Fushinobu, S.
Deposit date:2010-04-22
Release date:2010-08-25
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal Structures of phosphoketolase: thiamine diphosphate-dependent dehydration mechanism
J.Biol.Chem., 285, 2010
3AHI
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BU of 3ahi by Molmil
H320A mutant of Phosphoketolase from Bifidobacterium Breve complexed with acetyl thiamine diphosphate
Descriptor: 1,2-ETHANEDIOL, 2-ACETYL-THIAMINE DIPHOSPHATE, MAGNESIUM ION, ...
Authors:Suzuki, R, Katayama, T, Kim, B.-J, Wakagi, T, Shoun, H, Ashida, H, Yamamoto, K, Fushinobu, S.
Deposit date:2010-04-22
Release date:2010-08-25
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal Structures of phosphoketolase: thiamine diphosphate-dependent dehydration mechanism
J.Biol.Chem., 285, 2010
3AHD
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BU of 3ahd by Molmil
Phosphoketolase from Bifidobacterium Breve complexed with 2-acetyl-thiamine diphosphate
Descriptor: 1,2-ETHANEDIOL, 2-ACETYL-THIAMINE DIPHOSPHATE, MAGNESIUM ION, ...
Authors:Suzuki, R, Katayama, T, Kim, B.-J, Wakagi, T, Shoun, H, Ashida, H, Yamamoto, K, Fushinobu, S.
Deposit date:2010-04-22
Release date:2010-08-25
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal Structures of phosphoketolase: thiamine diphosphate-dependent dehydration mechanism
J.Biol.Chem., 285, 2010
3AHC
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BU of 3ahc by Molmil
Resting form of Phosphoketolase from Bifidobacterium Breve
Descriptor: 1,2-ETHANEDIOL, MAGNESIUM ION, NONAETHYLENE GLYCOL, ...
Authors:Suzuki, R, Katayama, T, Kim, B.-J, Wakagi, T, Shoun, H, Ashida, H, Yamamoto, K, Fushinobu, S.
Deposit date:2010-04-22
Release date:2010-08-25
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystal Structures of phosphoketolase: thiamine diphosphate-dependent dehydration mechanism
J.Biol.Chem., 285, 2010
3AHE
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BU of 3ahe by Molmil
Phosphoketolase from Bifidobacterium Breve complexed with dihydroxyethyl thiamine diphosphate
Descriptor: 1,2-ETHANEDIOL, 2-[3-[(4-AMINO-2-METHYL-5-PYRIMIDINYL)METHYL]-2-(1,2-DIHYDROXYETHYL)-4-METHYL-1,3-THIAZOL-3-IUM-5-YL]ETHYL TRIHYDROGEN DIPHOSPHATE, MAGNESIUM ION, ...
Authors:Suzuki, R, Katayama, T, Kim, B.-J, Wakagi, T, Shoun, H, Ashida, H, Yamamoto, K, Fushinobu, S.
Deposit date:2010-04-22
Release date:2010-08-25
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal Structures of phosphoketolase: thiamine diphosphate-dependent dehydration mechanism
J.Biol.Chem., 285, 2010
3AHJ
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BU of 3ahj by Molmil
H553A mutant of Phosphoketolase from Bifidobacterium Breve
Descriptor: 1,2-ETHANEDIOL, MAGNESIUM ION, THIAMINE DIPHOSPHATE, ...
Authors:Suzuki, R, Katayama, T, Kim, B.-J, Wakagi, T, Shoun, H, Ashida, H, Yamamoto, K, Fushinobu, S.
Deposit date:2010-04-22
Release date:2010-08-25
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal Structures of phosphoketolase: thiamine diphosphate-dependent dehydration mechanism
J.Biol.Chem., 285, 2010
3AHH
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BU of 3ahh by Molmil
H142A mutant of Phosphoketolase from Bifidobacterium Breve complexed with acetyl thiamine diphosphate
Descriptor: 1,2-ETHANEDIOL, 2-ACETYL-THIAMINE DIPHOSPHATE, MAGNESIUM ION, ...
Authors:Suzuki, R, Katayama, T, Kim, B.-J, Wakagi, T, Shoun, H, Ashida, H, Yamamoto, K, Fushinobu, S.
Deposit date:2010-04-22
Release date:2010-08-25
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal Structures of phosphoketolase: thiamine diphosphate-dependent dehydration mechanism
J.Biol.Chem., 285, 2010
3AHF
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BU of 3ahf by Molmil
Phosphoketolase from Bifidobacterium Breve complexed with inorganic phosphate
Descriptor: GLYCEROL, MAGNESIUM ION, PHOSPHATE ION, ...
Authors:Suzuki, R, Katayama, T, Kim, B.-J, Wakagi, T, Shoun, H, Ashida, H, Yamamoto, K, Fushinobu, S.
Deposit date:2010-04-22
Release date:2010-08-25
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal Structures of phosphoketolase: thiamine diphosphate-dependent dehydration mechanism
J.Biol.Chem., 285, 2010
3ABZ
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BU of 3abz by Molmil
Crystal structure of Se-Met labeled Beta-glucosidase from Kluyveromyces marxianus
Descriptor: Beta-glucosidase I, GLYCEROL
Authors:Yoshida, E, Hidaka, M, Fushinobu, S, Katayama, T, Kumagai, H.
Deposit date:2009-12-25
Release date:2010-08-11
Last modified:2013-10-30
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Role of a PA14 domain in determining substrate specificity of a glycoside hydrolase family 3 beta-glucosidase from Kluyveromyces marxianus.
Biochem.J., 431, 2010

 

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