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1KVE
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BU of 1kve by Molmil
KILLER TOXIN FROM HALOTOLERANT YEAST
Descriptor: SMK TOXIN
Authors:Kashiwagi, T, Kunishima, N, Suzuki, C, Tsuchiya, F, Nikkuni, S, Arata, Y, Morikawa, K.
Deposit date:1996-10-04
Release date:1997-04-01
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:The novel acidophilic structure of the killer toxin from halotolerant yeast demonstrates remarkable folding similarity with a fungal killer toxin.
Structure, 5, 1997
1KVD
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KILLER TOXIN FROM HALOTOLERANT YEAST
Descriptor: SMK TOXIN, SULFATE ION
Authors:Kashiwagi, T, Kunishima, N, Suzuki, C, Tsuchiya, F, Nikkuni, S, Arata, Y, Morikawa, K.
Deposit date:1996-10-04
Release date:1997-04-01
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:The novel acidophilic structure of the killer toxin from halotolerant yeast demonstrates remarkable folding similarity with a fungal killer toxin.
Structure, 5, 1997
1KVB
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E. COLI RIBONUCLEASE HI D134H MUTANT
Descriptor: RIBONUCLEASE H
Authors:Kashiwagi, T, Jeanteur, D, Haruki, M, Katayanagi, K, Kanaya, S, Morikawa, K.
Deposit date:1996-10-04
Release date:1997-03-12
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Proposal for new catalytic roles for two invariant residues in Escherichia coli ribonuclease HI.
Protein Eng., 9, 1996
1KVA
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E. COLI RIBONUCLEASE HI D134A MUTANT
Descriptor: RIBONUCLEASE H
Authors:Kashiwagi, T, Jeanteur, D, Haruki, M, Katayanagi, K, Kanaya, S, Morikawa, K.
Deposit date:1996-10-04
Release date:1997-03-12
Last modified:2021-11-03
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Proposal for new catalytic roles for two invariant residues in Escherichia coli ribonuclease HI.
Protein Eng., 9, 1996
1KVC
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E. COLI RIBONUCLEASE HI D134N MUTANT
Descriptor: RIBONUCLEASE H
Authors:Kashiwagi, T, Jeanteur, D, Haruki, M, Katayanagi, K, Kanaya, S, Morikawa, K.
Deposit date:1996-10-04
Release date:1997-03-12
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Proposal for new catalytic roles for two invariant residues in Escherichia coli ribonuclease HI.
Protein Eng., 9, 1996
1IU4
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BU of 1iu4 by Molmil
Crystal Structure Analysis of the Microbial Transglutaminase
Descriptor: microbial transglutaminase
Authors:Kashiwagi, T, Yokoyama, K, Ishikawa, K, Ono, K, Ejima, D, Matsui, H, Suzuki, E.
Deposit date:2002-02-27
Release date:2002-08-27
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Crystal structure of microbial transglutaminase from Streptoverticillium mobaraense
J.Biol.Chem., 277, 2002
6LXV
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BU of 6lxv by Molmil
Cryo-EM structure of phosphoketolase from Bifidobacterium longum
Descriptor: CALCIUM ION, Phosphoketolase, THIAMINE DIPHOSPHATE
Authors:Nakata, K, Miyazaki, N, Yamaguchi, H, Hirose, M, Miyano, H, Mizukoshi, T, Kashiwagi, T, Iwasaki, K.
Deposit date:2020-02-12
Release date:2021-02-17
Last modified:2022-10-12
Method:ELECTRON MICROSCOPY (2.1 Å)
Cite:High-resolution structure of phosphoketolase from Bifidobacterium longum determined by cryo-EM single-particle analysis.
J.Struct.Biol., 214, 2022
1WP1
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BU of 1wp1 by Molmil
Crystal structure of the drug-discharge outer membrane protein, OprM
Descriptor: Outer membrane protein oprM
Authors:Akama, H, Kanemaki, M, Yoshimura, M, Tsukihara, T, Kashiwagi, T, Narita, S, Nakagawa, A, Nakae, T.
Deposit date:2004-08-28
Release date:2004-11-02
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.56 Å)
Cite:Crystal structure of the drug discharge outer membrane protein, OprM, of Pseudomonas aeruginosa: dual modes of membrane anchoring and occluded cavity end
J.Biol.Chem., 279, 2004
2DPF
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BU of 2dpf by Molmil
Crystal Structure of curculin1 homodimer
Descriptor: Curculin, SULFATE ION
Authors:Kurimoto, E, Suzuki, M, Amemiya, E, Yamaguchi, Y, Nirasawa, S, Shimba, N, Xu, N, Kashiwagi, T, Kawai, M, Suzuki, E, Kato, K.
Deposit date:2006-05-11
Release date:2007-05-15
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Curculin Exhibits Sweet-tasting and Taste-modifying Activities through Its Distinct Molecular Surfaces.
J.Biol.Chem., 282, 2007
1VAS
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BU of 1vas by Molmil
ATOMIC MODEL OF A PYRIMIDINE DIMER SPECIFIC EXCISION REPAIR ENZYME COMPLEXED WITH A DNA SUBSTRATE: STRUCTURAL BASIS FOR DAMAGED DNA RECOGNITION
Descriptor: DNA (5'-D(*AP*TP*CP*GP*CP*GP*TP*TP*GP*CP*GP*CP*T)-3'), DNA (5'-D(*TP*AP*GP*CP*GP*CP*AP*AP*CP*GP*CP*GP*A)-3'), PROTEIN (T4 ENDONUCLEASE V (E.C.3.1.25.1))
Authors:Vassylyev, D.G, Kashiwagi, T, Mikami, Y, Ariyoshi, M, Iwai, S, Ohtsuka, E, Morikawa, K.
Deposit date:1995-09-08
Release date:1996-01-31
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.75 Å)
Cite:Atomic model of a pyrimidine dimer excision repair enzyme complexed with a DNA substrate: structural basis for damaged DNA recognition.
Cell(Cambridge,Mass.), 83, 1995
5D45
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BU of 5d45 by Molmil
Crystal Structure of FABP4 in complex with 3-(5-cyclopropyl-2,3-diphenyl-1H-indol-1-yl)propanoic acid
Descriptor: 3-(5-cyclopropyl-2,3-diphenyl-1H-indol-1-yl)propanoic acid, Fatty acid-binding protein, adipocyte
Authors:Tagami, U, Takahashi, K, Igarashi, S, Ejima, C, Yoshida, T, Takeshita, S, Miyanaga, W, Sugiki, M, Tokumasu, M, Hatanaka, T, Kashiwagi, T, Ishikawa, K, Miyano, H, Mizukoshi, T.
Deposit date:2015-08-07
Release date:2016-06-22
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Interaction Analysis of FABP4 Inhibitors by X-ray Crystallography and Fragment Molecular Orbital Analysis
Acs Med.Chem.Lett., 7, 2016
5D48
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Crystal Structure of FABP4 in complex with 3-{5-cyclopropyl-3-(3,5-dimethyl-1H-pyrazol-4-yl)-2-[3-(propan-2-yloxy) phenyl]-1H-indol-1-yl}propanoic acid
Descriptor: 3-{5-cyclopropyl-3-(3,5-dimethyl-1H-pyrazol-4-yl)-2-[3-(propan-2-yloxy)phenyl]-1H-indol-1-yl}propanoic acid, Fatty acid-binding protein, adipocyte, ...
Authors:Tagami, U, Takahashi, K, Igarashi, S, Ejima, C, Yoshida, T, Takeshita, S, Miyanaga, W, Sugiki, M, Tokumasu, M, Hatanaka, T, Kashiwagi, T, Ishikawa, K, Miyano, H, Mizukoshi, T.
Deposit date:2015-08-07
Release date:2016-06-22
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.81 Å)
Cite:Interaction Analysis of FABP4 Inhibitors by X-ray Crystallography and Fragment Molecular Orbital Analysis
Acs Med.Chem.Lett., 7, 2016
5D4A
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BU of 5d4a by Molmil
Crystal Structure of FABP4 in complex with 3-(2-phenyl-1H-indol-1-yl)propanoic acid
Descriptor: 3-(2-phenyl-1H-indol-1-yl)propanoic acid, Fatty acid-binding protein, adipocyte
Authors:Tagami, U, Takahashi, K, Igarashi, S, Ejima, C, Yoshida, T, Takeshita, S, Miyanaga, W, Sugiki, M, Tokumasu, M, Hatanaka, T, Kashiwagi, T, Ishikawa, K, Miyano, H, Mizukoshi, T.
Deposit date:2015-08-07
Release date:2016-06-22
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Interaction Analysis of FABP4 Inhibitors by X-ray Crystallography and Fragment Molecular Orbital Analysis
Acs Med.Chem.Lett., 7, 2016
5D47
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Crystal Structure of FABP4 in complex with 3-[5-cyclopropyl-3-(3-methoxypyridin-4-yl)-2-phenyl-1H-indol-1-yl] propanoic acid
Descriptor: 3-[5-cyclopropyl-3-(3-methoxypyridin-4-yl)-2-phenyl-1H-indol-1-yl]propanoic acid, Fatty acid-binding protein, adipocyte
Authors:Tagami, U, Takahashi, K, Igarashi, S, Ejima, C, Yoshida, T, Takeshita, S, Miyanaga, W, Sugiki, M, Tokumasu, M, Hatanaka, T, Kashiwagi, T, Ishikawa, K, Miyano, H, Mizukoshi, T.
Deposit date:2015-08-07
Release date:2016-06-22
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Interaction Analysis of FABP4 Inhibitors by X-ray Crystallography and Fragment Molecular Orbital Analysis
Acs Med.Chem.Lett., 7, 2016
5ZBC
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BU of 5zbc by Molmil
Crystal structure of Se-Met tryptophan oxidase (C395A mutant) from Chromobacterium violaceum
Descriptor: FLAVIN-ADENINE DINUCLEOTIDE, Flavin-dependent L-tryptophan oxidase VioA
Authors:Yamaguchi, H, Tatsumi, M, Takahashi, K, Tagami, U, Sugiki, M, Kashiwagi, T, Okazaki, S, Mizukoshi, T, Asano, Y.
Deposit date:2018-02-11
Release date:2018-12-19
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Protein engineering for improving the thermostability of tryptophan oxidase and insights from structural analysis.
J. Biochem., 164, 2018
5ZBD
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BU of 5zbd by Molmil
Crystal structure of tryptophan oxidase (C395A mutant) from Chromobacterium violaceum
Descriptor: FLAVIN-ADENINE DINUCLEOTIDE, Flavin-dependent L-tryptophan oxidase VioA, TRYPTOPHAN
Authors:Yamaguchi, H, Tatsumi, M, Takahashi, K, Tagami, U, Sugiki, M, Kashiwagi, T, Okazaki, S, Mizukoshi, T, Asano, Y.
Deposit date:2018-02-11
Release date:2018-12-19
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Protein engineering for improving the thermostability of tryptophan oxidase and insights from structural analysis.
J. Biochem., 164, 2018
6ACF
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BU of 6acf by Molmil
structure of leucine dehydrogenase from Geobacillus stearothermophilus by cryo-EM
Descriptor: Leucine dehydrogenase
Authors:Yamaguchi, H, Kamegawa, A, Nakata, K, Kashiwagi, T, Mizukoshi, T, Fujiyoshi, Y, Tani, K.
Deposit date:2018-07-26
Release date:2018-12-26
Last modified:2024-03-27
Method:ELECTRON MICROSCOPY (3 Å)
Cite:Structural insights into thermostabilization of leucine dehydrogenase from its atomic structure by cryo-electron microscopy
J. Struct. Biol., 205, 2019
6ACH
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BU of 6ach by Molmil
Structure of NAD+-bound leucine dehydrogenase from Geobacillus stearothermophilus by cryo-EM
Descriptor: Leucine dehydrogenase, NICOTINAMIDE-ADENINE-DINUCLEOTIDE
Authors:Yamaguchi, H, Kamegawa, A, Nakata, K, Kashiwagi, T, Mizukoshi, T, Fujiyoshi, Y, Tani, K.
Deposit date:2018-07-26
Release date:2018-12-26
Last modified:2024-03-27
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Structural insights into thermostabilization of leucine dehydrogenase from its atomic structure by cryo-electron microscopy
J. Struct. Biol., 205, 2019
3AI7
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BU of 3ai7 by Molmil
Crystal Structure of Bifidobacterium Longum Phosphoketolase
Descriptor: CALCIUM ION, THIAMINE DIPHOSPHATE, Xylulose-5-phosphate/fructose-6-phosphate phosphoketolase
Authors:Takahashi, K, Tagami, U, Shimba, N, Kashiwagi, T, Ishikawa, K, Suzuki, E.
Deposit date:2010-05-10
Release date:2010-09-15
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal structure of Bifidobacterium Longum phosphoketolase; key enzyme for glucose metabolism in Bifidobacterium
Febs Lett., 584, 2010
7C8I
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BU of 7c8i by Molmil
Ambient temperature structure of Bifidobacgterium longum phosphoketolase with thiamine diphosphate and phosphoenol pyuruvate
Descriptor: CALCIUM ION, PHOSPHOENOLPYRUVATE, THIAMINE DIPHOSPHATE, ...
Authors:Nakata, K, Kashiwagi, T, Nango, E, Miyano, H, Mizukoshi, T, Iwata, S.
Deposit date:2020-06-01
Release date:2021-06-02
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Ambient temperature structure of phosphoketolase from Bifidobacterium longum determined by serial femtosecond X-ray crystallography.
Acta Crystallogr D Struct Biol, 79, 2023
7C8H
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BU of 7c8h by Molmil
Ambient temperature structure of Bifidobacterium longum phosphoketolase with thiamine diphosphate
Descriptor: (2S)-2-hydroxybutanedioic acid, CALCIUM ION, MALONIC ACID, ...
Authors:Nakata, K, Kashiwagi, T, Nango, E, Miyano, H, Mizukoshi, T, Iwata, S.
Deposit date:2020-06-01
Release date:2021-06-02
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Ambient temperature structure of phosphoketolase from Bifidobacterium longum determined by serial femtosecond X-ray crystallography.
Acta Crystallogr D Struct Biol, 79, 2023
7ERU
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BU of 7eru by Molmil
Crystal structure of L-histidine decarboxylase (C57S mutant) from Photobacterium phosphoreum
Descriptor: Histidine decarboxylase
Authors:Oda, Y, Nakata, K, Yamaguchi, H, Kashiwagi, T, Miyano, H, Mizukoshi, T.
Deposit date:2021-05-07
Release date:2022-02-16
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.85 Å)
Cite:Structural insights into the enhanced thermostability of cysteine substitution mutants of L-histidine decarboxylase from Photobacterium phosphoreum.
J.Biochem., 171, 2022
7ERV
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BU of 7erv by Molmil
Crystal structure of L-histidine decarboxylase (C57S/C101V/C282V mutant) from Photobacterium phosphoreum
Descriptor: Histidine decarboxylase, IMIDAZOLE
Authors:Oda, Y, Nakata, K, Yamaguchi, H, Kashiwagi, T, Miyano, H, Mizukoshi, T.
Deposit date:2021-05-07
Release date:2022-02-16
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structural insights into the enhanced thermostability of cysteine substitution mutants of L-histidine decarboxylase from Photobacterium phosphoreum.
J.Biochem., 171, 2022
1A99
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BU of 1a99 by Molmil
PUTRESCINE RECEPTOR (POTF) FROM E. COLI
Descriptor: 1,4-DIAMINOBUTANE, PUTRESCINE-BINDING PROTEIN
Authors:Vassylyev, D.G, Tomitori, H, Kashiwagi, K, Morikawa, K, Igarashi, K.
Deposit date:1998-04-17
Release date:1998-10-21
Last modified:2020-04-01
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal structure and mutational analysis of the Escherichia coli putrescine receptor. Structural basis for substrate specificity.
J.Biol.Chem., 273, 1998

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