Author results

1KVD
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KILLER TOXIN FROM HALOTOLERANT YEAST
Descriptor:SMK TOXIN, SULFATE ION
Authors:Kashiwagi, T., Kunishima, N., Suzuki, C., Tsuchiya, F., Nikkuni, S., Arata, Y., Morikawa, K.
Deposit date:1996-10-04
Release date:1997-04-01
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:The novel acidophilic structure of the killer toxin from halotolerant yeast demonstrates remarkable folding similarity with a fungal killer toxin.
Structure, 5, 1997
1KVE
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KILLER TOXIN FROM HALOTOLERANT YEAST
Descriptor:SMK TOXIN
Authors:Kashiwagi, T., Kunishima, N., Suzuki, C., Tsuchiya, F., Nikkuni, S., Arata, Y., Morikawa, K.
Deposit date:1996-10-04
Release date:1997-04-01
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:The novel acidophilic structure of the killer toxin from halotolerant yeast demonstrates remarkable folding similarity with a fungal killer toxin.
Structure, 5, 1997
1KVA
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E. COLI RIBONUCLEASE HI D134A MUTANT
Descriptor:RIBONUCLEASE H
Authors:Kashiwagi, T., Jeanteur, D., Haruki, M., Katayanagi, K., Kanaya, S., Morikawa, K.
Deposit date:1996-10-04
Release date:1997-03-12
Last modified:2018-04-18
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Proposal for new catalytic roles for two invariant residues in Escherichia coli ribonuclease HI.
Protein Eng., 9, 1996
1KVB
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E. COLI RIBONUCLEASE HI D134H MUTANT
Descriptor:RIBONUCLEASE H
Authors:Kashiwagi, T., Jeanteur, D., Haruki, M., Katayanagi, K., Kanaya, S., Morikawa, K.
Deposit date:1996-10-04
Release date:1997-03-12
Last modified:2018-04-18
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Proposal for new catalytic roles for two invariant residues in Escherichia coli ribonuclease HI.
Protein Eng., 9, 1996
1KVC
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E. COLI RIBONUCLEASE HI D134N MUTANT
Descriptor:RIBONUCLEASE H
Authors:Kashiwagi, T., Jeanteur, D., Haruki, M., Katayanagi, K., Kanaya, S., Morikawa, K.
Deposit date:1996-10-04
Release date:1997-03-12
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Proposal for new catalytic roles for two invariant residues in Escherichia coli ribonuclease HI.
Protein Eng., 9, 1996
1IU4
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CRYSTAL STRUCTURE ANALYSIS OF THE MICROBIAL TRANSGLUTAMINASE
Descriptor:microbial transglutaminase
Authors:Kashiwagi, T., Yokoyama, K., Ishikawa, K., Ono, K., Ejima, D., Matsui, H., Suzuki, E.
Deposit date:2002-02-27
Release date:2002-08-27
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Crystal structure of microbial transglutaminase from Streptoverticillium mobaraense
J.Biol.Chem., 277, 2002
5D45
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CRYSTAL STRUCTURE OF FABP4 IN COMPLEX WITH 3-(5-CYCLOPROPYL-2,3-DIPHENYL-1H-INDOL-1-YL)PROPANOIC ACID
Descriptor:Fatty acid-binding protein, adipocyte, 3-(5-cyclopropyl-2,3-diphenyl-1H-indol-1-yl)propanoic acid
Authors:Tagami, U., Takahashi, K., Igarashi, S., Ejima, C., Yoshida, T., Takeshita, S., Miyanaga, W., Sugiki, M., Tokumasu, M., Hatanaka, T., Kashiwagi, T., Ishikawa, K., Miyano, H., Mizukoshi, T.
Deposit date:2015-08-07
Release date:2016-06-22
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Interaction Analysis of FABP4 Inhibitors by X-ray Crystallography and Fragment Molecular Orbital Analysis
Acs Med.Chem.Lett., 7, 2016
5D47
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CRYSTAL STRUCTURE OF FABP4 IN COMPLEX WITH 3-[5-CYCLOPROPYL-3-(3-METHOXYPYRIDIN-4-YL)-2-PHENYL-1H-INDOL-1-YL] PROPANOIC ACID
Descriptor:Fatty acid-binding protein, adipocyte, 3-[5-cyclopropyl-3-(3-methoxypyridin-4-yl)-2-phenyl-1H-indol-1-yl]propanoic acid
Authors:Tagami, U., Takahashi, K., Igarashi, S., Ejima, C., Yoshida, T., Takeshita, S., Miyanaga, W., Sugiki, M., Tokumasu, M., Hatanaka, T., Kashiwagi, T., Ishikawa, K., Miyano, H., Mizukoshi, T.
Deposit date:2015-08-07
Release date:2016-06-22
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Interaction Analysis of FABP4 Inhibitors by X-ray Crystallography and Fragment Molecular Orbital Analysis
Acs Med.Chem.Lett., 7, 2016
5D48
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CRYSTAL STRUCTURE OF FABP4 IN COMPLEX WITH 3-{5-CYCLOPROPYL-3-(3,5-DIMETHYL-1H-PYRAZOL-4-YL)-2-[3-(PROPAN-2-YLOXY) PHENYL]-1H-INDOL-1-YL}PROPANOIC ACID
Descriptor:Fatty acid-binding protein, adipocyte, 3-{5-cyclopropyl-3-(3,5-dimethyl-1H-pyrazol-4-yl)-2-[3-(propan-2-yloxy)phenyl]-1H-indol-1-yl}propanoic acid, ...
Authors:Tagami, U., Takahashi, K., Igarashi, S., Ejima, C., Yoshida, T., Takeshita, S., Miyanaga, W., Sugiki, M., Tokumasu, M., Hatanaka, T., Kashiwagi, T., Ishikawa, K., Miyano, H., Mizukoshi, T.
Deposit date:2015-08-07
Release date:2016-06-22
Method:X-RAY DIFFRACTION (1.81 Å)
Cite:Interaction Analysis of FABP4 Inhibitors by X-ray Crystallography and Fragment Molecular Orbital Analysis
Acs Med.Chem.Lett., 7, 2016
5D4A
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CRYSTAL STRUCTURE OF FABP4 IN COMPLEX WITH 3-(2-PHENYL-1H-INDOL-1-YL)PROPANOIC ACID
Descriptor:Fatty acid-binding protein, adipocyte, 3-(2-phenyl-1H-indol-1-yl)propanoic acid
Authors:Tagami, U., Takahashi, K., Igarashi, S., Ejima, C., Yoshida, T., Takeshita, S., Miyanaga, W., Sugiki, M., Tokumasu, M., Hatanaka, T., Kashiwagi, T., Ishikawa, K., Miyano, H., Mizukoshi, T.
Deposit date:2015-08-07
Release date:2016-06-22
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Interaction Analysis of FABP4 Inhibitors by X-ray Crystallography and Fragment Molecular Orbital Analysis
Acs Med.Chem.Lett., 7, 2016
1WP1
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CRYSTAL STRUCTURE OF THE DRUG-DISCHARGE OUTER MEMBRANE PROTEIN, OPRM
Descriptor:Outer membrane protein oprM
Authors:Akama, H., Kanemaki, M., Yoshimura, M., Tsukihara, T., Kashiwagi, T., Narita, S., Nakagawa, A., Nakae, T.
Deposit date:2004-08-28
Release date:2004-11-02
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.56 Å)
Cite:Crystal structure of the drug discharge outer membrane protein, OprM, of Pseudomonas aeruginosa: dual modes of membrane anchoring and occluded cavity end
J.Biol.Chem., 279, 2004
1VAS
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ATOMIC MODEL OF A PYRIMIDINE DIMER SPECIFIC EXCISION REPAIR ENZYME COMPLEXED WITH A DNA SUBSTRATE: STRUCTURAL BASIS FOR DAMAGED DNA RECOGNITION
Descriptor:DNA (5'-D(*AP*TP*CP*GP*CP*GP*TP*TP*GP*CP*GP*CP*T)-3'), DNA (5'-D(*TP*AP*GP*CP*GP*CP*AP*AP*CP*GP*CP*GP*A)-3'), PROTEIN (T4 ENDONUCLEASE V (E.C.3.1.25.1))
Authors:Vassylyev, D.G., Kashiwagi, T., Mikami, Y., Ariyoshi, M., Iwai, S., Ohtsuka, E., Morikawa, K.
Deposit date:1995-09-08
Release date:1996-01-31
Last modified:2013-05-01
Method:X-RAY DIFFRACTION (2.75 Å)
Cite:Atomic model of a pyrimidine dimer excision repair enzyme complexed with a DNA substrate: structural basis for damaged DNA recognition.
Cell(Cambridge,Mass.), 83, 1995
5ZBC
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CRYSTAL STRUCTURE OF SE-MET TRYPTOPHAN OXIDASE (C395A MUTANT) FROM CHROMOBACTERIUM VIOLACEUM
Descriptor:Flavin-dependent L-tryptophan oxidase VioA, FLAVIN-ADENINE DINUCLEOTIDE
Authors:Yamaguchi, H., Tatsumi, M., Takahashi, K., Tagami, U., Sugiki, M., Kashiwagi, T., Okazaki, S., Mizukoshi, T., Asano, Y.
Deposit date:2018-02-11
Release date:2018-12-19
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Protein engineering for improving the thermostability of tryptophan oxidase and insights from structural analysis.
J. Biochem., 164, 2018
5ZBD
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CRYSTAL STRUCTURE OF TRYPTOPHAN OXIDASE (C395A MUTANT) FROM CHROMOBACTERIUM VIOLACEUM
Descriptor:Flavin-dependent L-tryptophan oxidase VioA, TRYPTOPHAN, FLAVIN-ADENINE DINUCLEOTIDE
Authors:Yamaguchi, H., Tatsumi, M., Takahashi, K., Tagami, U., Sugiki, M., Kashiwagi, T., Okazaki, S., Mizukoshi, T., Asano, Y.
Deposit date:2018-02-11
Release date:2018-12-19
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Protein engineering for improving the thermostability of tryptophan oxidase and insights from structural analysis.
J. Biochem., 164, 2018
6ACF
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STRUCTURE OF LEUCINE DEHYDROGENASE FROM GEOBACILLUS STEAROTHERMOPHILUS BY CRYO-EM
Descriptor:Leucine dehydrogenase
Authors:Yamaguchi, H., Kamegawa, A., Nakata, K., Kashiwagi, T., Mizukoshi, T., Fujiyoshi, Y., Tani, K.
Deposit date:2018-07-26
Release date:2018-12-26
Last modified:2019-02-06
Method:ELECTRON MICROSCOPY (3 Å)
Cite:Structural insights into thermostabilization of leucine dehydrogenase from its atomic structure by cryo-electron microscopy
J. Struct. Biol., 205, 2019
6ACH
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STRUCTURE OF NAD+-BOUND LEUCINE DEHYDROGENASE FROM GEOBACILLUS STEAROTHERMOPHILUS BY CRYO-EM
Descriptor:Leucine dehydrogenase, NICOTINAMIDE-ADENINE-DINUCLEOTIDE
Authors:Yamaguchi, H., Kamegawa, A., Nakata, K., Kashiwagi, T., Mizukoshi, T., Fujiyoshi, Y., Tani, K.
Deposit date:2018-07-26
Release date:2018-12-26
Last modified:2019-02-06
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Structural insights into thermostabilization of leucine dehydrogenase from its atomic structure by cryo-electron microscopy
J. Struct. Biol., 205, 2019
2DPF
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CRYSTAL STRUCTURE OF CURCULIN1 HOMODIMER
Descriptor:Curculin, SULFATE ION
Authors:Kurimoto, E., Suzuki, M., Amemiya, E., Yamaguchi, Y., Nirasawa, S., Shimba, N., Xu, N., Kashiwagi, T., Kawai, M., Suzuki, E., Kato, K.
Deposit date:2006-05-11
Release date:2007-05-15
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Curculin Exhibits Sweet-tasting and Taste-modifying Activities through Its Distinct Molecular Surfaces.
J.Biol.Chem., 282, 2007
3AI7
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CRYSTAL STRUCTURE OF BIFIDOBACTERIUM LONGUM PHOSPHOKETOLASE
Descriptor:Xylulose-5-phosphate/fructose-6-phosphate phosphoketolase, THIAMINE DIPHOSPHATE, CALCIUM ION
Authors:Takahashi, K., Tagami, U., Shimba, N., Kashiwagi, T., Ishikawa, K., Suzuki, E.
Deposit date:2010-05-10
Release date:2010-09-15
Last modified:2014-01-29
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal structure of Bifidobacterium Longum phosphoketolase; key enzyme for glucose metabolism in Bifidobacterium
Febs Lett., 584, 2010
1A99
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PUTRESCINE RECEPTOR (POTF) FROM E. COLI
Descriptor:PUTRESCINE-BINDING PROTEIN, 1,4-DIAMINOBUTANE
Authors:Vassylyev, D.G., Tomitori, H., Kashiwagi, K., Morikawa, K., Igarashi, K.
Deposit date:1998-04-17
Release date:1998-10-21
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal structure and mutational analysis of the Escherichia coli putrescine receptor. Structural basis for substrate specificity.
J.Biol.Chem., 273, 1998